Recent Releases of SpeedyWeather.jl

SpeedyWeather v0.18.1

Diff since v0.18.0

Merged pull requests:

Fix ozone absorption: deposit energy into stratospheric layers, not TOA (#986) (@nviebig)
SpeedLimitDrag to counteract winds >100m/s (#987) (@hannahw0od)
Progress bar with additional information (#989) (@milankl)
Fix terminology from colatitudes to latitudes (#990) (@aasdelat)
Bump to v0.18.1 (#991) (@milankl)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] 4 months ago

SpeedyWeather v0.18.0

Diff since v0.17.4

Breaking changes

The number of soil layers is now solely defined by the land model and not in the SpectralGrid anymore #898
EarthDryAtmosphere to dispatch like PrimitiveDryModel inside kernels #944 (removed model.clausius_clapeyron)
Parameterizations with KernelAbstractions #873 #878 #924 #931 #933 #942 (several parameterizations had name changes, e.g. SimplifiedBettsMiller -> BettsMillerConvection)
Monorepo structure and separate tests #957

Other changes

Installation main instructions in docs + schedule tests #979
Bug fix: Cloud reflectivity on half level above not below #978
Fix absorptivity_water_vapor and absorptivity_cloud_base default values #974
Particle advection GPU ready #897
Enzyme compat relaxed as Enzyme bug was fixed and uv_from_vordiv! kernel version used on CPU as well #971
GitHub Actions: Cache updated #945
Revised GPU benchmarks to include full GPU models #946 and the dynamical core #967
Label-based modular skip CI mechanism for github and buildkite #957
Changed OneBandShortwave to ij logic #955
Fixes some typos and LaTeX renderings in the docs #953
Fix bug in parameter subsetting #960
Follow-up to #783: finalize @param/@component markers #935
Adjust fill!(::PrognosticVariables, x) to new variable system #949
Code formatting with Runic applied #950 #964
Implicit correction kernelized and GPU-ready #891
The dynamical core of the primitive equations is now GPU-ready with kernelized implementations #934
copyto! for LowerTriangularArray revised #941
Sea ice and snow insulation in surface flux computation #873
Boundary layer drag revisited with ocean/land roughness and new defaults #873
OneBandLongwave radiation implemented and default #873
Initial conditions revised to take in a SpectralGrid to ensure correct number type #927 #928
Diagnostic and prognostic variables partially revised to NamedTuples and variables system introduced to allow to add to them modularly #885
uv_from_vordiv! kernel version used #893
Fixes some typos and formatting/LaTeX rendering in Docs #939
Land snow model #833
Updated extended differentiability tests #929
GitHub Actions Checkout updated to version 6 #926
set!(::Field,::Functions,...) works now on GPU (however by explicitly transferring between GPU and CPU) #925
Fixes round trip transform tests #921
Updated docs CairoMakie compatibility to "0.12, 0.13, 0.14, 0.15"
OneBandShortwave radiation implemented with diagnostic clouds #888
AMDGPU extension #901
Don't adapt rings in RingGrids on GPU #920
README updates #915
Fixes some formatting/LaTeX rendering in Docs #916

Merged pull requests:

Structure for land snow component (#833) (@milankl)
GPU Parameterizations via kernel over ij (#873) (@milankl)
OneBandShortwave radiation scheme with diagnostic cloud reflection (#888) (@nviebig)
Implicit Correction Kernelized (#891) (@maximilian-gelbrecht)
Use uv_from_vordiv kernel version (#893) (@maximilian-gelbrecht)
Soil layers defined in land instead of SpectralGrid (#898) (@maximilian-gelbrecht)
AMDGPU extension (#901) (@gregordecristoforo)
Fix typos and improve wording in README (#915) (@bgroenks96)
Fix formatting in output.md for mathematical equations (#916) (@navidcy)
[RingGrids] Don't adapt rings on GPU (#920) (@maximilian-gelbrecht)
Fix round trip test of transforms (#921) (@maximilian-gelbrecht)
Update docs CairoMakie compatibility to "0.12, 0.13, 0.14, 0.15" (#923) (@nviebig)
Small fixes for new parametrization on GPU (#924) (@maximilian-gelbrecht)
set! Field with functions on GPU (but not really) (#925) (@maximilian-gelbrecht)
Bump actions/checkout from 5 to 6 (#926) (@dependabot[bot])
Initial conditions revised (typed precision and working on GPU? + tests) (#927) (@maximilian-gelbrecht)
More fixes for the initial conditions (#928) (@maximilian-gelbrecht)
Minor Updates Differentiability Tests (#929) (@maximilian-gelbrecht)
GPU parametrization: adapt but tuples (#931) (@maximilian-gelbrecht)
GPU parametrizations with propagate inbounds (#933) (@maximilian-gelbrecht)
Dynamical Core on GPU (#934) (@maximilian-gelbrecht)
Follow-up to #783: finalize @param/@component markers (#935) (@nviebig)
Fix some typos and rendering in the docs (#939) (@navidcy)
[LowerTriangularArrays] new copyto! (#941) (@maximilian-gelbrecht)
GPU Params Geopot CPU for Differentiability (#942) (@maximilian-gelbrecht)
EarthDryAtmosphere implemented (#944) (@milankl)
Bump actions/cache from 4 to 5 (#945) (@dependabot[bot])
Update Benchmarks for full GPU version (#946) (@maximilian-gelbrecht)
Fix fill! for PrognosticVariables (#949) (@maximilian-gelbrecht)
Runic Formatting (#950) (@maximilian-gelbrecht)
LaTeX/Literate rendering fixes (#953) (@navidcy)
Changed OneBandShortwave to ij logic (#955) (@nviebig)
Monorepo structure, separate tests and skip mechanism (#957) (@milankl)
Fix bug in parameter subsetting (#960) (@bgroenks96)
Fix typo in how_to_run_speedy.md (#962) (@jveigel)
Reapply runic formatting (#964) (@maximilian-gelbrecht)
More benchmarks, now for the dynamical core (#967) (@maximilian-gelbrecht)
Relax Enzyme compat again (#971) (@maximilian-gelbrecht)
Fix absorptivity_water_vapor and absorptivity_cloud_base default values (#974) (@nviebig)
Simplify broadcasting of RingGrids and LTA (#977) (@maximilian-gelbrecht)
Shortwave Absorption Bug Fix & Stability Investigation (#978) (@nviebig)
Installation instructions + schedule test (#979) (@milankl)

Closed issues:

Slow Runs for T127 (#819)
SnowLand challenges (#843)
Use Dict or NamedTuple to hold variables (#847)
SpeedyWeather's tropics too cold (#856)
GPU performance of land and sea ice model (#870)
Split tests across sub packages (#900)
Code Formatting (#910)
Example in Docs/Radiation fails (#954)
Using main branch in Julia v1.10 (#966)
NaNs appear after a few timesteps in BarotropicModel (T31, dt=2400s) after setting vorticity field (#972)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] 4 months ago

SpeedyWeather.jl - SpeedyWeather-v0.18.0

SpeedyWeather SpeedyWeather-v0.18.0

Breaking changes

The number of soil layers is now solely defined by the land model and not in the SpectralGrid anymore #898
EarthDryAtmosphere to dispatch like PrimitiveDryModel inside kernels #944 (removed model.clausius_clapeyron)
Parameterizations with KernelAbstractions #873 #878 #924 #931 #933 #942 (several parameterizations had name changes, e.g. SimplifiedBettsMiller -> BettsMillerConvection)
Monorepo structure and separate tests #957

Other changes

Installation main instructions in docs + schedule tests #979
Bug fix: Cloud reflectivity on half level above not below #978
Fix absorptivity_water_vapor and absorptivity_cloud_base default values #974
Particle advection GPU ready #897
Enzyme compat relaxed as Enzyme bug was fixed and uv_from_vordiv! kernel version used on CPU as well #971
GitHub Actions: Cache updated #945
Revised GPU benchmarks to include full GPU models #946 and the dynamical core #967
Label-based modular skip CI mechanism for github and buildkite #957
Changed OneBandShortwave to ij logic #955
Fixes some typos and LaTeX renderings in the docs #953
Fix bug in parameter subsetting #960
Follow-up to #783: finalize @param/@component markers #935
Adjust fill!(::PrognosticVariables, x) to new variable system #949
Code formatting with Runic applied #950 #964
Implicit correction kernelized and GPU-ready #891
The dynamical core of the primitive equations is now GPU-ready with kernelized implementations #934
copyto! for LowerTriangularArray revised #941
Sea ice and snow insulation in surface flux computation #873
Boundary layer drag revisited with ocean/land roughness and new defaults #873
OneBandLongwave radiation implemented and default #873
Initial conditions revised to take in a SpectralGrid to ensure correct number type #927 #928
Diagnostic and prognostic variables partially revised to NamedTuples and variables system introduced to allow to add to them modularly #885
uv_from_vordiv! kernel version used #893
Fixes some typos and formatting/LaTeX rendering in Docs #939
Land snow model #833
Updated extended differentiability tests #929
GitHub Actions Checkout updated to version 6 #926
set!(::Field,::Functions,...) works now on GPU (however by explicitly transferring between GPU and CPU) #925
Fixes round trip transform tests #921
Updated docs CairoMakie compatibility to "0.12, 0.13, 0.14, 0.15"
OneBandShortwave radiation implemented with diagnostic clouds #888
AMDGPU extension #901
Don't adapt rings in RingGrids on GPU #920
README updates #915
Fixes some formatting/LaTeX rendering in Docs #916

Merged pull requests:

data, dependencies, initial structure (#1) (@milankl)
towards spectral transform (#2) (@milankl)
with appveyor and travis ymls (#3) (@milankl)
towards boundaries, geopotential, parameters, prognostics (#4) (@milankl)
Init (#5) (@milankl)
Init (#6) (@milankl)
Init (#7) (@milankl)
Legendre is approx, sin/cos lat now from the north pole (#8) (@milankl)
Docstrings and renaming (#9) (@milankl)
CI, gitignore, compat updated (#12) (@milankl)
make docs (#13) (@milankl)
copy over from sams version (#14) (@milankl)
initial docs structure (#15) (@milankl)
doc cleanup and developers (#16) (@milankl)
timestep! for 2D and 3D (#17) (@milankl)
Tk/tendencies (#18) (@tomkimpson)
mk/timestepping and horizontal diffusion (#19) (@milankl)
Mk/vertical (#23) (@milankl)
nlat=trunc+1 default resolution (#24) (@milankl)
leapfrog! without mem alloc (#25) (@milankl)
mk/timestepping (#26) (@milankl)
Style and convention in docs (#27) (@milankl)
Naming (#28) (@milankl)
Params renamed to Parameters (#29) (@milankl)
σ_levels, geopot renamed, n_stratosphere_levels introduced (#30) (@milankl)
Spectral transform benchamrk, clip negatives (#34) (@milankl)
Spectral transform with variable resolution (#35) (@milankl)
T31 default, mx=nx=T+1 (#36) (@milankl)
CompatHelper: add new compat entry for AssociatedLegendrePolynomials at version 1, (keep existing compat) (#37) (@github-actions[bot])
New spectral transform (#38) (@milankl)
Update tendencies structure (#39) (@tomkimpson)
Orography from high resolution (2048x1024) file (#41) (@milankl)
CompatHelper: bump compat for BitInformation to 0.4, (keep existing compat) (#43) (@github-actions[bot])
Spectral gradients and Laplacians (#44) (@milankl)
CompatHelper: bump compat for BitInformation to 0.5, (keep existing compat) (#46) (@github-actions[bot])
remove addition of Revise.jl to toml (#49) (@tomkimpson)
Updated get_spectral_tendencies() function (#51) (@tomkimpson)
doc latex with ` (#52) (@milankl)
initialisation test in Float32/64 (#54) (@milankl)
Initialize model to time stepping flow (#55) (@milankl)
Feedback pipeline (#56) (@milankl)
show PrognosticVariables with UnicodePlots (#58) (@milankl)
NetCDF output (#59) (@milankl)
Barotropic vorticity time integration (#60) (@milankl)
Mk/cleanup (#65) (@milankl)
performance: avoid mem alloc for legendre (#66) (@milankl)
Build readable_secs on Dates.canonicalize (#67) (@giordano)
progress meter included (#69) (@milankl)
Scale vorticity and gradients with radius (#70) (@milankl)
Pole stability, time step scaling, barotropic testcase (#72) (@milankl)
new teaser pic with T341 (#73) (@milankl)
renaming vorticity advection for consistency (#76) (@milankl)
Various models via dispatch (#78) (@milankl)
bump to v0.1.1 (#79) (@milankl)
vor as unicodeplot, days/day speed shown (#80) (@milankl)
Require Julia v1.7 (#81) (@white-alistair)
Parametrization of Large-Scale Condensation (#82) (@white-alistair)
Introduce ModelSetup distinction (#87) (@milankl)
get u,v from vor and div in ShallowWaterModel (#88) (@milankl)
More documentation (#89) (@milankl)
Define methods for ShallowWaterModel (#92) (@milankl)
CompatHelper: bump compat for UnicodePlots to 3, (keep existing compat) (#93) (@github-actions[bot])
Semi-implicit time stepping (#94) (@milankl)
bump to v0.2 (#95) (@milankl)
run???? folder conflict (#99) (@milankl)
div,curl corrected (#100) (@milankl)
bump to v0.2.1 (#101) (@milankl)
make scale_coslat! on output type flexible (#103) (@milankl)
Orography Legendre precomputation in Float64 (#105) (@milankl)
Take exponential of pres_grid for parametrizations (#107) (@white-alistair)
Renaming for consistency, UV_from_vor! added (#108) (@milankl)
Docs: sph harmonics + derivates updated (#109) (@milankl)
LowerTriangularMatrix implemented (#110) (@milankl)
write restart file, restart from it (#113) (@milankl)
CompatHelper: add new compat entry for JLD2 at version 0.4, (keep existing compat) (#114) (@github-actions[bot])
CompatHelper: add new compat entry for CodecZlib at version 0.7, (keep existing compat) (#115) (@github-actions[bot])
fibonacci -> triangle number (#116) (@milankl)
LowerTriangularMatrix in PrognVars, DiagnVars +restructured (#117) (@milankl)
Basics for KernelAbstractions / GPU (#118) (@maximilian-gelbrecht)
CompatHelper: bump compat for CUDAKernels to 0.4, (keep existing compat) (#119) (@github-actions[bot])
CompatHelper: bump compat for KernelAbstractions to 0.8, (keep existing compat) (#120) (@github-actions[bot])
AbstractGrids towards HEALPix or Octahedral (#122) (@milankl)
Parametrizations with ColumnVariables (#123) (@milankl)
Grid abstractions +indexing, SpecTrans performance (#124) (@milankl)
LowerTriangularMatrix extended (#125) (@milankl)
Grid-flexible spectral transform (#127) (@milankl)
Convection (#128) (@white-alistair)
Adapt functions for diagnostic_variables.jl (#130) (@katharinamaetschke)
Grid indexing (#132) (@milankl)
Update README.md (#133) (@milankl)
Float32 spectral transform (#136) (@milankl)
add OctahedralClenshawGrid + some refactoring of src/grids.jl (#138) (@hottad)
Initialize sigma levels manually (#139) (@maximilian-gelbrecht)
Grid to matrix for output (#140) (@milankl)
Inverse Laplace ∇⁻²! via kernel in ∇²! (#142) (@milankl)
Adapt structures for diagnostic variables and prognostic variables (#143) (@katharinamaetschke)
Interface relaxation with seasonal cycle (#144) (@milankl)
Shallow water model and OctahedralClenshawGrid default (#145) (@milankl)
Add kernelabstractions_adtests CI (#147) (@maximilian-gelbrecht)
Keep GPU branch up to date (#148) (@maximilian-gelbrecht)
FullHEALPixGrid (#150) (@milankl)
Update CI.yml (#152) (@maximilian-gelbrecht)
set_vars! function to easily set variables in PrognosticVariables (#154) (@maximilian-gelbrecht)
fix get_var for pressure (#155) (@maximilian-gelbrecht)
HEALPix4Grid and FullHEALPix4Grid implementation (#156) (@hottad)
Lon offset rotation enabled (#160) (@milankl)
Healpix.jl dep removed (#163) (@milankl)
LowerTriangularMatrix Broadcast fix (#164) (@maximilian-gelbrecht)
Legendre shortcut: truncate loop over m (#166) (@milankl)
No [l,m] access to LTM in gradients (#167) (@milankl)
Add shortwave radiation parametrization (#169) (@dmey)
Adapt functions (#173) (@katharinamaetschke)
CompatHelper: bump compat for FastGaussQuadrature to 0.5, (keep existing compat) (#174) (@github-actions[bot])
run_speedy!(progn,diagn,model) (#175) (@milankl)
Use BarotropicModel instead of :barotropic etc (#176) (@milankl)
Add longwave radiation parametrization (#177) (@dmey)
Update copyright and licensing information (#179) (@dmey)
allocate arrays filled with nans (#181) (@milankl)
Output Time Int64 and Custom Run_Id (#186) (@maximilian-gelbrecht)
Adapt functions DefineDiffusion, DefineImplicit and Geometry (#187) (@katharinamaetschke)
Geopotential calculation (#188) (@milankl)
Surface pressure tendency (#189) (@milankl)
Vertical velocity dsigma/dt (#191) (@milankl)
Keep GPU branch up-to-date with Main (#193) (@maximilian-gelbrecht)
add_tendencies! updated to LowerTriangularMatrix (#195) (@milankl)
Bernoulli potential for PrimitiveEquation (#196) (@milankl)
Virtual temperature calculation (#197) (@milankl)
Vertical advection of u,v + tendencies (vor, pres grads) (#198) (@milankl)
Fix link to doc in README.md (#200) (@dmey)
Fix typo (#202) (@navidcy)
-Dbar in spectral; a,b work arrays; humidity advection; vorticity_flux_divcurl! with flags (#204) (@milankl)
Temperature equation and primitive equation time stepping (#205) (@milankl)
temp, pres initial conditions at rest (#206) (@milankl)
mountain on/off/scale as parameter (#207) (@milankl)
test ∇×∇=0 and ∇⋅∇=∇² (#208) (@milankl)
horizontal_diffusion! generalised to ::ModelSetup (#209) (@milankl)
Reformulated temperature equation (#210) (@milankl)
Overhauled vertical advection (#211) (@milankl)
Interpolation: AbstractGrid -> arbitrary grid (#212) (@milankl)
In-place and more efficient eachring computation (#213) (@milankl)
add colorbar to unicodeplots (#215) (@milankl)
typo in vertical advection (#216) (@milankl)
Parameters{Model<:ModelSetup} and orography abstracted (#217) (@milankl)
Add mini development notes (#221) (@dmey)
ZonalRidge orography added, Geometry with lond,latd (#223) (@milankl)
u,v_grid instead of U,V_grid; /coslat in spectrans (#224) (@milankl)
interpolate, interpolate! between grids (#225) (@milankl)
NetCDF output with interpolator (#226) (@milankl)
Obtain n_stratosphere_levels from default parameter sigma_tropopause (#227) (@milankl)
add convenience interpolate method, show ring info for grids (#229) (@milankl)
InitialConditions abstracted (#230) (@milankl)
Scaling centralised, output on adjustable grid sizes (#233) (@milankl)
Rename to OctaHEALPixGrid (#234) (@milankl)
started grid documentation (#235) (@milankl)
Adapt docs to SpeedyWeather orga (#238) (@milankl)
Galewsky 2004 initial conditions for shallow water (#239) (@milankl)
update @ref in docs (#240) (@milankl)
restructure into folders and submodules (#241) (@milankl)
grids comparison.png link corrected (#243) (@milankl)
Update README.md (#244) (@milankl)
New normalization for automatic sigma levels (#245) (@milankl)
remove callside @inline as this requires 1.8 (#246) (@milankl)
Galewsky init conditions modifiable in default params (#247) (@milankl)
CompatHelper: bump compat for CUDA to 4, (keep existing compat) (#248) (@milankl)
Jablonowski and Williamson initial conditions (#249) (@milankl)
JW06 pressure constant (#250) (@milankl)
Semi-implicit corrections for primitive equations (#251) (@milankl)
Update README.md (#253) (@milankl)
Primitive equation dry core bughunt (#256) (@milankl)
Utility function load_trajectory added (#258) (@maximilian-gelbrecht)
Use Temporary Files for Test Output (#261) (@white-alistair)
copy! for PrognosticVariables (#262) (@maximilian-gelbrecht)
Multi-threading added (#264) (@milankl)
Boundary layer scheme from Held and Suarez (#269) (@milankl)
Held Suarez temperature forcing (#270) (@milankl)
Update README.md (#273) (@milankl)
Make default RNG seed deterministic (#274) (@white-alistair)
Reduce memory: no U,V,bernoulli in DiagnVariables (#275) (@milankl)
Shorten implicit geopotential k:nlev (#276) (@milankl)
Planet abstracted, Earth <: Planet (#277) (@milankl)
Hyper diffusion overhauled (#278) (@milankl)
primitive equation video in readme (#279) (@milankl)
TemperatureRelaxation, BoundaryLayer type stable (#280) (@milankl)
Merge main into mk/parameterizations (#281) (@milankl)
Missing (-1)^{n+1} factor from hyperdiffusion term (#283) (@navidcy)
Add spaces after commas (#284) (@navidcy)
restructure PrognosticVariables (#287) (@milankl)
Docs for Parameters (#288) (@navidcy)
Dealiasing parameter for quad,cub truncation (#290) (@milankl)
Better docs rendering (#291) (@navidcy)
Diffusion tapering for stratosphere (#292) (@milankl)
Fix typo in docs: julia v1.78 -> v1.8 (#293) (@navidcy)
Bump up julia requirement to v1.8 (#295) (@navidcy)
New stratosphere diffusion defaults (#298) (@milankl)
Progress.txt output with speed and ETA (#301) (@milankl)
Temperature relaxation towards Jablonowski's profile (#302) (@milankl)
new time step scaling following Jablonowski (#303) (@milankl)
ETA and speedstring in progress.txt got lost (#305) (@milankl)
Power spectrum analysis (#307) (@milankl)
HyperDiffusion and VerticalDiffusion (#308) (@milankl)
@unpack + import Paramters removed (#312) (@milankl)
Parameterization fluxes and dry static energy diffusion (#313) (@milankl)
docs minor stuff (#314) (@milankl)
Truncate orography always to smooth T85 (#315) (@milankl)
Keepbits per variable (#316) (@milankl)
Float32, PrimitiveDryCore, OctaGauss new defaults (#317) (@milankl)
Avoid type instability in fluxes_to_tendencies! (#318) (@milankl)
Minor things (#319) (@milankl)
Some docs improvements (#321) (@navidcy)
Update CompatHelper.yml (#322) (@navidcy)
Update TagBot.yml (#324) (@navidcy)
Add compat entry for FLoops (#326) (@navidcy)
New SpectralGrid, Model, initialize!, simulation, run! structure (#327) (@milankl)
spectral_truncation/interpolation type stable (#328) (@milankl)
1st order upwind scheme for vertical advection (#330) (@milankl)
bump to v0.5 (#331) (@milankl)
Add clarification for SWE variables (#332) (@navidcy)
Update README.md (#333) (@milankl)
RingGrids and LowerTriangularMatrices docs (#335) (@milankl)
remove Model from SpectralGrid (#336) (@milankl)
Update README.md (#337) (@milankl)
SpeedyCondensation implemented (#338) (@milankl)
Update README.md (#339) (@milankl)
NetCDF output documented (#340) (@milankl)
Barotropic vorticity equation algorithm described (#341) (@milankl)
barotropic, shallowwater test cases (#343) (@milankl)
absolute paths docs img (#344) (@milankl)
Run examples and produce output with every Docs built (#345) (@navidcy)
Plot ::AbstractGrid as Unicode heatmap (#346) (@milankl)
Barotropic, shallow water, and some primitive model documentation (#348) (@milankl)
Update README.md with logo (#349) (@milankl)
Fix typos in docs (#351) (@pitmonticone)
Fix typos in mk/docs (#352) (@pitmonticone)
Move clock to prognostic variables (#353) (@milankl)
plot small grids without spaces (#354) (@milankl)
Non-adaptive implicit: temp_profile in implicit only (#355) (@milankl)
SpectralTransform for square LowerTriMats too (#356) (@milankl)
CompatHelper: bump compat for KernelAbstractions to 0.9, (keep existi… (#357) (@milankl)
Support KernelAbstractions 0.9 (#358) (@vchuravy)
Other video for primitive (#360) (@milankl)
CI tests on Julia 1.8, 1.9 + test on Julia nightly every week (#361) (@milankl)
Different vertical advection schemes (#362) (@simone-silvestri)
SpeedyTransforms documentation (#363) (@milankl)
Increase test tolerance (#364) (@milankl)
Primitive equation documentation (#365) (@milankl)
Bugfix in vertical advection (#368) (@simone-silvestri)
Speedstring precompilation warning (#369) (@milankl)
Full and octahedral Gaussian grid documented (#371) (@milankl)
get_truncation(::AbstractGrid) (#373) (@milankl)
bump to v0.6 (#374) (@milankl)
Forcing and drag for the ShallowWaterModel (#376) (@milankl)
eta/pres was not output (#378) (@milankl)
RandomWaves initial conditions (#379) (@milankl)
scale_coslat funcs without Geometry, moved to RingGrids (#381) (@milankl)
Set lmax+1 row to zero in divergence!, curl! (#383) (@milankl)
Output via NCDatasets.jl, remove NetCDF.jl deps (#384) (@milankl)
Pretty printing for structs (#385) (@milankl)
Model setups documented (#386) (@milankl)
JOSS paper (#387) (@milankl)
Land-sea mask (#389) (@milankl)
Bug: First NetCDF time step is always 2000-01-01 (#390) (@milankl)
Coriolis and div,curl,laplace convience functions (#392) (@milankl)
Accumulate vor/div tendencies (#393) (@milankl)
Ocean/Land for prognostic variables added (#395) (@milankl)
CompatHelper: bump compat for CUDA to 5, (keep existing compat) (#396) (@milankl)
Documentation: Extending SpeedyWeather.jl (#397) (@milankl)
CompatHelper: bump compat for FastGaussQuadrature to 1, (keep existin… (#398) (@milankl)
Surface fluxes of heat, moisture and momentum: Land and ocean seasonal climatology (#399) (@milankl)
CompatHelper: bump compat for NCDatasets to 0.13, (keep existing compat) (#401) (@milankl)
Soil moisture and vegetation (#403) (@milankl)
Overhauled initial conditions for humidity (#404) (@milankl)
Output cloud top [Pa], condensation simplified (#405) (@milankl)
NetCDF output with BFloat16 (#407) (@milankl)
plot(::LowerTriangularMatrix) (#408) (@milankl)
Simplify default vertical coordinate spacing to equi-distant with sigma (#409) (@milankl)
Convection (#414) (@milankl)
Fix load_trajectory (#415) (@maximilian-gelbrecht)
Output_dt in leapfrog time stepping and some adjustments for using Dates (#418) (@maximilian-gelbrecht)
Bump to v0.7 (#419) (@milankl)
Period Keyword Argument instead of n_days (#420) (@maximilian-gelbrecht)
JOSS badge added (#421) (@milankl)
bump to v0.7.1 (#422) (@milankl)
Make prognostics available for forcing, drag in Barotropic/SWM (#423) (@milankl)
Stochastic stirring video (#424) (@milankl)
Add random wave video (#425) (@milankl)
Export forcing!, drag!, etc for extending those with fewer conflicts (#426) (@milankl)
CompatHelper: bump compat for Adapt to 4, (keep existing compat) (#427) (@milankl)
Use Julia v1.10 for CI and building Docs (#428) (@navidcy)
Add compat entry for NCDatasets v0.14 (#429) (@navidcy)
Adjust time step with radius (#430) (@milankl)
Add remark about Julia compat (#431) (@navidcy)
Switch off dynamics (#432) (@milankl)
Vertical diffusion of humidity (#433) (@milankl)
NoBoundaryLayer but TemperatureRelaxation default for dry & wet models (#435) (@milankl)
bump to v0.8 (#437) (@milankl)
Solar zenith angle calculation (#438) (@milankl)
ImmediateCondensation and Clausius-Clapeyron (#439) (@milankl)
Flux limiters for surface drag and heat fluxes (#440) (@milankl)
Bulk Richardson number-based boundary layer drag (#441) (@milankl)
Simplified BettsMiller convection (#442) (@milankl)
Simple radiation schemes: UniformCooling, TransparentShortwave (#444) (@milankl)
ImplicitCondensation not immediate anymore (#447) (@milankl)
AquaPlanetMask (#450) (@milankl)
Use Documenter.@docs functionality to display docstring in Documentation (#451) (@navidcy)
Run LowerTriangularMatrix and output examples while building the docs (#453) (@navidcy)
Some more examples running live in the Docs (#454) (@navidcy)
Callbacks (#455) (@milankl)
Restructuring the docs (#457) (@milankl)
Collapse levels to streamline the documentation navigation (#458) (@natgeo-wong)
Parametric models, non-parametric abstract types, remove DynamicsConstants, Dict of callbacks (#459) (@milankl)
Particle advection in 2D, all models (#465) (@milankl)
Dry Betts-Miller convection (#467) (@milankl)
Add dependabot (#468) (@milankl)
Initial conditions modular for variables (#469) (@milankl)
Remove DEFAULT_NF generators of Earth and EarthAtmosphere (#470) (@milankl)
Bump actions/cache from 3 to 4 (#471) (@dependabot[bot])
Bump actions/checkout from 3 to 4 (#472) (@dependabot[bot])
Add space after comma (#473) (@navidcy)
Change arg name for isincreasing/isdecreasing to agree w docstring (#474) (@navidcy)
Fix the Docs/SpeedyTransforms/Geostrophy example + make it run live by doc built (#475) (@navidcy)
Remove testing for 1.8 and 1.9 temporarily (#476) (@milankl)
Add space after semicolon (#477) (@navidcy)
Delete deprecated doc instructions (#479) (@navidcy)
Add @ids for model pages + add links to models pages in Docs landing page (#481) (@navidcy)
ParticleTracker with netCDF (#484) (@milankl)
rand(Particle) cos-distribution corrected (#485) (@milankl)
Update README.md (#486) (@milankl)
Bump to v0.9 (#487) (@milankl)
Scheduler for callbacks (#488) (@milankl)
Zenodo DOI added (#489) (@milankl)
Schedule bug with millisecond time steps (#490) (@milankl)
Update README.md with particle advection video (#491) (@milankl)
Field trees (#492) (@milankl)
Export coriolis, unscale diagnostics at finish, add! callbacks directly to model too (#494) (@milankl)
Trees with summarysize (#495) (@milankl)
ConstantOceanClimatology, AquaPlanet (#496) (@milankl)
Document typical online analysis steps (#497) (@milankl)
Convection with work arrays for thread safety (#498) (@milankl)
Bulk Richardson-based vertical diffusion (#499) (@milankl)
LowerTriangularMatrix copyto! range bug (#501) (@milankl)
Jeevanjee longwave radiation (#502) (@milankl)
LowerTriangularMatrices: N-dimensional and GPU ready (#503) (@maximilian-gelbrecht)
Add to analysis doc (from new branch) (#505) (@milankl)
Broadcasting for RingGrids (#506) (@milankl)
Benchmark overview (#509) (@milankl)
Large-scale condensation documented (#510) (@milankl)
Add Makie extension (#511) (@milankl)
Convection documentation (#512) (@milankl)
Radiation documentation (#513) (@milankl)
Held-Suarez example, NoTypes for surface fluxes (#514) (@milankl)
Bump julia-actions/setup-julia from 1 to 2 (#516) (@dependabot[bot])
Remove PythonPlot dependency of docs (#517) (@milankl)
Model construction without type constraints (#519) (@milankl)
AbstractGridArray N-dimensional and GPU ready (#520) (@milankl)
Exports more gradient operators from SpeedyTransforms (#523) (@milankl)
Change weight in ZonalJet() (#524) (@miniufo)
Restructured dynamical core, variables array-agnostic and 3-dimensional, modular netCDF output (#525) (@milankl)
Orography documented (#526) (@milankl)
Particle advection time stepping corrected (#528) (@milankl)
Humidity video for readme (#529) (@milankl)
Surface flux documentation (#530) (@milankl)
Add explicit arithmetics again to LowerTriangularArrays (#531) (@maximilian-gelbrecht)
Vertical diffusion documentation (#532) (@milankl)
Ocean model documentation (#533) (@milankl)
Parameterization structure documented (#534) (@milankl)
Bump Makie compat (#535) (@asinghvi17)
Docs clarification: Parameterization for primitive models only (#536) (@milankl)
Restructure docs following #443 (#537) (@milankl)
Scale orography and smooth fraction of resolved wavenumbers (#538) (@milankl)
StochasticStirring example with CairoMakie (#539) (@milankl)
Horizontal diffusion not adaptive (#540) (@milankl)
Large-scale condensation at previous time step (#541) (@milankl)
Surface fluxes calculated from previous time step (#542) (@milankl)
Change LowerTriangularArrays to be subtype of AbstractArray{T,N-1} (#543) (@maximilian-gelbrecht)
bump to v0.10 (#545) (@milankl)
JOSS paper citation (#548) (@navidcy)
Bump actions/upload-artifact from 1 to 4 (#550) (@dependabot[bot])
Bump actions/checkout from 3 to 4 (#551) (@dependabot[bot])
Bump stefanzweifel/git-auto-commit-action from 4 to 5 (#552) (@dependabot[bot])
All parameterizations at prev timestep, flux limiters removed (#555) (@milankl)
Create CHANGELOG.md (#559) (@milankl)
LTA: copyto! for Vectors (#561) (@maximilian-gelbrecht)
LTA: colon indexing for LTM (#562) (@maximilian-gelbrecht)
Set! function for PrognosticVariables and ICs for new structure (#563) (@maximilian-gelbrecht)
New 4D Variable Structure: nlayers instead of nlev; starting to adjust docs (#566) (@maximilian-gelbrecht)
Fix RingGrid broadcast issue with mismatching dimensions (#568) (@maximilian-gelbrecht)
RingGrids: Fix RingGrids Array conversion (#572) (@maximilian-gelbrecht)
NetCDF output modularised (#573) (@milankl)
CompatHelper: bump compat for JLD2 to 0.5, (keep existing compat) (#574) (@github-actions[bot])
Benchmarks for individual dynamics functions (#577) (@maximilian-gelbrecht)
set! for orography (#578) (@milankl)
Add tracer advection (#579) (@milankl)
Set! documentation / keywords (#580) (@maximilian-gelbrecht)
Feedback.verbose coupled to isinteractive() (#582) (@milankl)
Array-agnostic SpectralTransform (#583) (@milankl)
Stop supporting Julia 1.9 (#585) (@milankl)
Move CUDA to extension (#586) (@milankl)
Do not interweave transform (#587) (@milankl)
Add Haversine and general spherical_distance and AbstractSphericalDistance functionality (#588) (@treigerm)
SpeedyTransforms: Differentiable transforms via custom Enzyme rule (#589) (@maximilian-gelbrecht)
CompatHelper: bump compat for GPUArrays to 11 and JLArrays to 0.2, (keep existing compat) (#590) (@github-actions[bot])
Rossby-Haurwitz wave initial conditions +docs (#591) (@milankl)
SpectralAR1Process and AbstractRandomProcess (#592) (@milankl)
Model constructors with positional SpectralGrid argument (#593) (@milankl)
Introduce OctaminimalGaussianArray; smaller, faster but less accurate (#595) (@milankl)
NetCDF output: Precipitation accumulated and rate (#596) (@milankl)
Bump to v0.12 (#597) (@milankl)
GeoMakie extension and interactive 3D grid visualisation on the sphere (#600) (@milankl)
Array-agnostic horizontal diffusion, +modularised (#601) (@milankl)
Implementation of CUDA-ised transform (#602) (@jackleland)
Define zonal_mean for any AbstractGridArray (#603) (@milankl)
Rossby-Haurwitz wave initial conditions for eta (#604) (@rivwgk)
Optical depth parameterization + array-agnostic ColumnVariables (#606) (@milankl)
Update README.md with dataviz (#608) (@milankl)
large-scale condensation at <100% (#609) (@minqi6)
set! for boundary conditions (#611) (@milankl)
ConstantLandTemperature implemented (#612) (@milankl)
Slab ocean and net surface and top-of-atmosphere fluxes (#613) (@milankl)
Include large-scale condensation tests (#615) (@milankl)
Power spectrum for n-dimensional LowerTriangularArray (#618) (@milankl)
CompatHelper: add new compat entry for FiniteDifferences in [weakdeps] at version 0.12, (keep existing compat) (#620) (@github-actions[bot])
CompatHelper: add new compat entry for Enzyme in [weakdeps] at version 0.13, (keep existing compat) (#622) (@github-actions[bot])
Change timestep to 40min at T31 (#623) (@milankl)
One band longwave radiation implemented (#624) (@milankl)
[SpeedyTransforms] Restrict finite difference tests to one grid only (#625) (@maximilian-gelbrecht)
[SpeedyTransforms] Exclude second differentiation identity test for OctahedralGrid (#627) (@maximilian-gelbrecht)
Introduce separate extended tests in CI (#628) (@maximilian-gelbrecht)
AbstractStochasticPhysics and SPPT (#629) (@milankl)
AbstractSurfacePerturbation (#631) (@milankl)
bump to v0.13 (#632) (@milankl)
NBandRadiation scheme for longwave outgoing (#633) (@milankl)
Number format flexibility with set! (#634) (@rocroc2017)
Forcing/drag for primitive models too (#635) (@milankl)
Roll back GPUArrays upgrade (#636) (@maximilian-gelbrecht)
RingGrinds more general indexing with Colon (less escapes) (#637) (@maximilian-gelbrecht)
Spectral Gradients Gradients (#638) (@maximilian-gelbrecht)
ConvectiveHeating implemented (#639) (@milankl)
GPU CI Pipeline (#645) (@maximilian-gelbrecht)
Dummy Buildkite Pipeline (#646) (@maximilian-gelbrecht)
Grid coordinates defined in degrees not colatitudes and radians (#647) (@milankl)
Clamp in ZonalWind to [0, 1] for sqrt (#649) (@milankl)
set! for time step (#650) (@milankl)
CI Extended Tests on 1.10 as well (#651) (@maximilian-gelbrecht)
Group initialize!, timestep!, finalize! of main time loop (#652) (@milankl)
New output variables definition simplified (#653) (@milankl)
bug: south pole at -90 for vertices (#654) (@milankl)
Differentiability tests for time stepping (#656) (@maximilian-gelbrecht)
NetCDF output for tracers, precipitation rates at initialize! again (#657) (@milankl)
bump compat to GPUArrays v11, JLArrays v0.2, KernelAbstractions 0.9 (#658) (@milankl)
First timesteps in main loop (#659) (@milankl)
CompatHelper: bump compat for Makie in [weakdeps] to 0.22, (keep existing compat) (#663) (@github-actions[bot])
Prescribed surface heat and evaporative fluxes (#664) (@milankl)
AbstractVectors in interpolation.jl (#665) (@milankl)
Initialize simulation restructured (#666) (@milankl)
Surface fluxes modular on ocean and land (#667) (@milankl)
[LowerTriangularMatrices] Sum for LTA (#668) (@maximilian-gelbrecht)
Precipitation rate for coupling (#669) (@milankl)
Bump to v0.14 (#670) (@milankl)
Land model modularised (#671) (@milankl)
Grid cell average bug fixes (#673) (@milankl)
Changes for Reactant.jl (#674) (@milankl)
JLD2 Output (#675) (@maximilian-gelbrecht)
Modular land model + diagnostic albedo, independent for ocean/land (#677) (@milankl)
SigmaCoordinates double-defined () constructor (#679) (@milankl)
SpeedyTransforms scratch memory part of DiagnosticVariables (#680) (@maximilian-gelbrecht)
Extended tests only on 1.10 (#681) (@maximilian-gelbrecht)
run! with steps argument (#684) (@milankl)
Increase output precision for accumulated precip (#685) (@milankl)
Make KolmogorovFlow default for BarotropicModel (#687) (@milankl)
Reverse for AbstractGridArray (#691) (@milankl)
Extended tests on comment and (maybe) all passing (#695) (@maximilian-gelbrecht)
Extended tests launched on comment on PR branch (#696) (@maximilian-gelbrecht)
Revising extended tests (#697) (@maximilian-gelbrecht)
Bump xt0rted/pull-request-comment-branch from 1 to 3 (#698) (@dependabot[bot])
Documentation of convection (#702) (@sunmoumou1)
Move get_faces function from extension to RingGrids (#706) (@milankl)
Documentation: surface variable output (#708) (@maximilian-gelbrecht)
RingGrid and LowerTriangularArray (longitude) rotation (#710) (@milankl)
Fix docstring rendering (#712) (@navidcy)
Move docs to SpeedyWeatherDocumentation (#713) (@milankl)
Add mod(lon, 360) for isapprox particles (#714) (@milankl)
Shallow water implicit without precomputed arrays (#717) (@milankl)
bump to v0.15 (#718) (@milankl)
Speed up CI for land (#719) (@milankl)
Reverse for LowerTriangularArray (#720) (@milankl)
Move Documentation to a separate repo, take #2 (#722) (@navidcy)
Update docs/dev link in README (#723) (@navidcy)
Remove jld2 & nc files from docs after make before deploy (#724) (@milankl)
Update docs urls (#725) (@navidcy)
Leapfrog (re)start, Implicit reinitialize option, RestartFile, ProgressTxt, ParametersTxt as callback (#726) (@milankl)
Restructure (GPU) utilities and work towards spectral gradients GPU (#727) (@maximilian-gelbrecht)
Move UnicodePlots to extension (#728) (@milankl)
Baroclinic wave divergence free (#729) (@milankl)
Remove DocPreviewCleanup workflow (#730) (@milankl)
Reduce CI time (#731) (@milankl)
Introduce Field for data on grid (#732) (@milankl)
Minimal barotropic model GPU compat (#733) (@milankl)
Introduce Spectrum for LowerTriangularArrays (#734) (@milankl)
Add KA kernels for spectral transform legendre methods (#736) (@jackleland)
Array-agnostic LowerTriangularMatrix (#738) (@milankl)
Add view that returns a LowerTriangularArray (#739) (@milankl)
CompatHelper: bump compat for Makie in [weakdeps] to 0.23, (keep existing compat) (#743) (@github-actions[bot])
Use view instead of tuple for prognostic variables (#745) (@milankl)
More shameless piracy on the high seas of time (#746) (@bgroenks96)
Bump stefanzweifel/git-auto-commit-action from 5 to 6 (#747) (@dependabot[bot])
Return UnicodePlots after run! when UnicodePlots.jl is loaded (#748) (@milankl)
Fix LTA docs (#749) (@maximilian-gelbrecht)
CompatHelper: bump compat for Makie in [weakdeps] to 0.24, (keep existing compat) (#750) (@github-actions[bot])
Add new parameter handling scheme for Barotropic model (#754) (@bgroenks96)
GeoMakie extension: animate simulation function (#755) (@maximilian-gelbrecht)
Adjust particles for GPU (#757) (@maximilian-gelbrecht)
Release v0.16 (#758) (@milankl)
Move full differentiability tests outside of regular tests (#759) (@maximilian-gelbrecht)
Fix Enzyme CI (#762) (@maximilian-gelbrecht)
Interpolation on GPU (#764) (@maximilian-gelbrecht)
nonparametric_type also for SubArray (#776) (@milankl)
CompatHelper: add new compat entry for ConstructionBase at version 1, (keep existing compat) (#777) (@github-actions[bot])
Overwrite output folder option (#782) (@milankl)
Restart from file for ocean and land (#784) (@milankl)
add a mailmap (#785) (@vchuravy)
Fix Haversine rounding errors with type promotion (#787) (@milankl)
Soil moisture field capacity (#788) (@milankl)
More ScratchMemory handling for SpectralTransforms (#791) (@maximilian-gelbrecht)
Towards PrimitiveDry on GPU (#792) (@maximilian-gelbrecht)
Jeevanjee surface fluxes with Stefan-Boltzmann and soil moisture field capacity (#794) (@pierluigividale)
Hotfix: remove explicit KA import to avoid import warnings (#798) (@maximilian-gelbrecht)
CompatHelper: add new compat entry for Atomix at version 1, (keep existing compat) (#799) (@github-actions[bot])
Fix admonition and typo on GPU-and-Architectures docs (#807) (@marcelovilla)
show architecture as "CPU"/"GPU" (#809) (@milankl)
Make all land model components mutable (#810) (@milankl)
Thermodynamic sea ice model (#811) (@milankl)
Keyword arguments for ImplicitPrimitiveEquation (#812) (@milankl)
ThermodynamicSeaIce testing (#814) (@milankl)
Towards standalone packages + ColumnFields (#815) (@maximilian-gelbrecht)
Make dynamic Land/Ocean/SeaIce models the default (#816) (@pierluigividale)
Snow fall from large-scale condensation (#817) (@pierluigividale)
Rename to surface humidity flux (#818) (@milankl)
Land with KernelAbstractions (#820) (@milankl)
Update CITATION.cff (#821) (@navidcy)
Introduce nothing as valid model component (#822) (@milankl)
ice thermodynamics in Clausius Clapeyron (#823) (@pierluigividale)
Reduce GPU overhead (#824) (@maximilian-gelbrecht)
CompatHelper: bump compat for JLD2 to 0.6, (keep existing compat) (#825) (@github-actions[bot])
Bump actions/checkout from 4 to 5 (#826) (@dependabot[bot])
Fix some missing scratch memory usages (#828) (@maximilian-gelbrecht)
Fix output_dt for JLD2Output (#829) (@maximilian-gelbrecht)
Start with soil moisture, temperature, SST, sea ice from climatology (#830) (@milankl)
Structure for land snow component (#833) (@milankl)
KA kernels for forcing and drag (#834) (@karinakowalczyk)
Compat entries for Subpackages (#835) (@maximilian-gelbrecht)
Rename SpeedyInternals to SpeedyWeatherInternals (#836) (@maximilian-gelbrecht)
Move radius to model.planet (#840) (@milankl)
Add compat entries of submodules to main env (#841) (@maximilian-gelbrecht)
Add logo to docs (#842) (@maximilian-gelbrecht)
More docs on GPU / on_architecture (#845) (@maximilian-gelbrecht)
Split Extensions across Subpackages (#846) (@maximilian-gelbrecht)
Bump version from 0.16.0 to 0.17.0 (#848) (@milankl)
Metal extension (#849) (@milankl)
Fix correct array type for LTA init (#850) (@maximilian-gelbrecht)
Call callbacks before output (#852) (@milankl)
Mean sea-level pressure output (#853) (@milankl)
Add dynamics variables into AllOutputVariables (#854) (@stella-bourdin)
More general forcing of pressure, vorticity and divergence (#855) (@milankl)
Implement surface wind and temperature outputs (#858) (@stella-bourdin)
Bump SpeedyWeatherInternals to v0.1.1 (#860) (@bgroenks96)
Bump SpeedyWeather revision to v0.17.1 (#863) (@bgroenks96)
Move Makie extensions to RingGrids and fix globe bug (#866) (@bgroenks96)
Update CITATION.cff (#869) (@milankl)
Enhance README with interactive usage example (#872) (@milankl)
GPU Parameterizations via kernel over ij (#873) (@milankl)
Remove JOSS paper draft workflow (#874) (@dependabot[bot])
Subpackages version 0.1.1 (#875) (@maximilian-gelbrecht)
Bump version to 0.17.2 (#877) (@maximilian-gelbrecht)
GPU version of parametrizations over ij (#878) (@maximilian-gelbrecht)
Move SpeedyParameters to SpeedyWeatherInternals (#880) (@bgroenks96)
Change particle tracking to every 4 hours (#881) (@milankl)
SpectralGrid constructor revised, e.g. from grid (#882) (@maximilian-gelbrecht)
Add missing compat entries for SpeedyWeatherInternals (#883) (@bgroenks96)
Revise Variables towards using NamedTuples and Modularity (#885) (@maximilian-gelbrecht)
Ring, nested and matrix order for OctaHEALPixGrid (#887) (@milankl)
OneBandShortwave radiation scheme with diagnostic cloud reflection (#888) (@nviebig)
SolarZenith and SolarZenithSeason constructors (#889) (@milankl)
Implicit Correction Kernelized (#891) (@maximilian-gelbrecht)
Seasonal ocean and land models kernelized (#892) (@maximilian-gelbrecht)
Use uv_from_vordiv kernel version (#893) (@maximilian-gelbrecht)
Fix typo in architectures_gpu.md (#894) (@gregordecristoforo)
Vertical advection kernelized (#895) (@maximilian-gelbrecht)
Soil layers defined in land instead of SpectralGrid (#898) (@maximilian-gelbrecht)
Remove unnecessary double imports of architecture (#899) (@gregordecristoforo)
AMDGPU extension (#901) (@gregordecristoforo)
Set particle sigma to layer they are advected on (#902) (@milankl)
Barotropic Model initialization (mostly) on GPU (#903) (@maximilian-gelbrecht)
Coriolis and adiabatic conv adapted to GPU (#904) (@maximilian-gelbrecht)
ScratchMemory allocation bug (#905) (@milankl)
Fix allocating transform on GPU (#906) (@maximilian-gelbrecht)
Show for LowerTriangularArray/Matrix on CPU/GPU (#907) (@milankl)
Bump version from 0.17.3 to 0.17.4 (#908) (@milankl)
Fix typos and improve wording in README (#915) (@bgroenks96)
Fix formatting in output.md for mathematical equations (#916) (@navidcy)
[RingGrids] Don't adapt rings on GPU (#920) (@maximilian-gelbrecht)
Fix round trip test of transforms (#921) (@maximilian-gelbrecht)
Update docs CairoMakie compatibility to "0.12, 0.13, 0.14, 0.15" (#923) (@nviebig)
Small fixes for new parametrization on GPU (#924) (@maximilian-gelbrecht)
set! Field with functions on GPU (but not really) (#925) (@maximilian-gelbrecht)
Bump actions/checkout from 5 to 6 (#926) (@dependabot[bot])
Initial conditions revised (typed precision and working on GPU? + tests) (#927) (@maximilian-gelbrecht)
More fixes for the initial conditions (#928) (@maximilian-gelbrecht)
Minor Updates Differentiability Tests (#929) (@maximilian-gelbrecht)
GPU parametrization: adapt but tuples (#931) (@maximilian-gelbrecht)
GPU parametrizations with propagate inbounds (#933) (@maximilian-gelbrecht)
Dynamical Core on GPU (#934) (@maximilian-gelbrecht)
Follow-up to #783: finalize @param/@component markers (#935) (@nviebig)
Fix some typos and rendering in the docs (#939) (@navidcy)
[LowerTriangularArrays] new copyto! (#941) (@maximilian-gelbrecht)
GPU Params Geopot CPU for Differentiability (#942) (@maximilian-gelbrecht)
EarthDryAtmosphere implemented (#944) (@milankl)
Bump actions/cache from 4 to 5 (#945) (@dependabot[bot])
Update Benchmarks for full GPU version (#946) (@maximilian-gelbrecht)
Fix fill! for PrognosticVariables (#949) (@maximilian-gelbrecht)
Runic Formatting (#950) (@maximilian-gelbrecht)
LaTeX/Literate rendering fixes (#953) (@navidcy)
Changed OneBandShortwave to ij logic (#955) (@nviebig)
Monorepo structure, separate tests and skip mechanism (#957) (@milankl)
Fix bug in parameter subsetting (#960) (@bgroenks96)
Fix typo in how_to_run_speedy.md (#962) (@jveigel)
Reapply runic formatting (#964) (@maximilian-gelbrecht)
More benchmarks, now for the dynamical core (#967) (@maximilian-gelbrecht)
Relax Enzyme compat again (#971) (@maximilian-gelbrecht)
Fix absorptivity_water_vapor and absorptivity_cloud_base default values (#974) (@nviebig)
Simplify broadcasting of RingGrids and LTA (#977) (@maximilian-gelbrecht)
Shortwave Absorption Bug Fix & Stability Investigation (#978) (@nviebig)
Installation instructions + schedule test (#979) (@milankl)

Closed issues:

Parallelism in the vertical (#20)
Available resolutions (#22)
16-bit FFT (#31)
Performance of the spectral transform (#32)
Prepare input data (#40)
Consistent definition of model (#42)
References for the dynamical core (#45)
Pretty printing (#57)
Spectral gradient leakage? (#63)
Naming "spectral" (#64)
Use logging infrastructure for feedback messages (#68)
TagBot trigger issue (#71)
Implementing various models (#74)
Spectral gradient unit test (#75)
test with posits (#77)
Horizontal domain decomposition for parametrizations (#83)
Factory Methods for Testing (#84)
Overhaul approach to physical constants and model parameters (#86)
Pre-allocate grid-point pressure values and use consistent naming (#91)
Rotating spherical harmonics gif not showing up (#96)
Get run id fails if 000?.xyz exists (#97)
Initial conditions for shallow water (#98)
Float64 run_speedy doesn't output correctly (#102)
Float32 high resolution spectral transform (#104)
Float32 vs Float64 performance (#106)
LowerTriangularMatrix for spectral coefficients (#111)
A new grid for SpeedyWeather.jl? (#112)
Example GPU kernels (#121)
Physical parameterizations: inconsistencies between speedy.f90 and the Speedy Documentation (#126)
Shortening the Legendre Transform over m (#131)
Output grids (#134)
Broadcast operations with LowerTriangularMatrix (#135)
Number format-flexibility (#137)
Inverse Laplacian (#141)
Consistency between NetCDF output grid and internal grid? (#146)
Forcing and climatology in the shallow water system (#151)
Longitude offset rotation (#159)
@simd in Legendre Transform? (#162)
copyto! function of LowerTriangularMatrix (#165)
OctahedralGaussianGrid not defined (#168)
Variable initialisation (#170)
Inconsistency of pressure variable in convection parametrizations (#171)
Use PsychroLib for psychrometric calculations (#172)
Precision of Time Output in NetCDF Files (#180)
Move to SpeedyWeather orga (#182)
Move parameterisations into folder (#183)
Discuss general API (#184)
Solution struct / return the Output struct (#185)
Progress towards primitive equations (#192)
Pre-compilation warnings (#194)
Design choices towards stochastic parameterizations (#199)
Gradients in spectral space ref in Docs/Dynamical Core is broken (#203)
Merging strategy (#214)
Liniting (#220)
Abstraction, type-hierarchy and modularity (#222)
Not more than 70 vertical levels (#228)
Outsourcing packages (#231)
Incompatible with Julia 1.7? (#232)
Unable to open output files using NCDatasets.jl (#236)
First output timestep is < 6 hours. (#237)
semi-implicit corrections (#252)
Linearize virtual temperature for geopotential? (dynamics only) (#254)
Renaming in Prognostic/DiagnosticVariables (#255)
Crazy temperatures: Vertical advection bug? (#257)
Expanding the Documentation (#263)
Jablonowski test case (#265)
Output time precision (again) (#266)
Vertical advection instability? (#271)
Not thread-safe / bit reproducible ?! (#272)
Cannot run example on non-GPU system (#282)
Windows permssions problem (#285)
Missing (-1)^{n+1} factor from hyperdiffusion term (#286)
Greenland whole column instability at T255 (#289)
Broken precompilation on Linux? (#294)
Precompilation warnings? (#296)
Literated example with the animation that is currently in README? (#297)
Temperature profiles, forcing vs implicit (#299)
Power spectrum (#304)
Diffusion scaling (#306)
Vertical diffusion (#309)
Topography smoothing (#310)
Static energy diffusion (#311)
Away from monolithic run_speedy()? (#320)
Global shallow-water run (#323)
CI runs on latest Julia release -- should we add more? (#325)
Hybrid vertical coordinates (#329)
Query about computational resources (#342)
What constitutes the 'state' of the model at a particular timestep (#347)
SpeedyWeather's logic and information flow (#350)
CI test on supported Julia versions? (#359)
Precompilation errors of IrrationalConstants dependency (#366)
SpectralGrid not defined in v0.5 (#367)
Precipitation downscaling/bias correction interface (#370)
Divergence of (hu, hv, h) (#372)
16 bit model (#375)
Initial conditions from PDEArena (#377)
divergence! should set last row to zero (#382)
plotting error with Float32sr spectralgrid! (#388)
Shallow water run (#391)
Barotropic vorticity model: Stochastic stirring (#394)
Conserved quantity verifying (#400)
Zanna & Bolton eddy parameterization (#402)
run BarotropicModel T21 with BFloat16 and output (#406)
low precision stochastic rounding (#411)
shallow-water case for a global ocean (#412)
online particle tracking (#413)
Output time axis: option to adhere to output_dt exactly (#416)
Given user-facing parameters that represent a time period actually units (#417)
Convection too weak?! (#436)
[JOSS review] Nat's Review of SpeedyWeather.jl (#443)
Condensation fireworks (#445)
[JOSS Review] questions + suggestions (#446)
[JOSS review] Zenodo archival (#448)
[JOSS Review] firstnames vs. initials in .bib file (#449)
Question about example in Docs/SpeedyTransforms/Geostrophy (#452)
Another simple radiation scheme (#456)
Automatic performance testing (#464)
Precompilation Error (#466)
JOSS review: text comments (#480)
Replace PythonPlot with a Julia-based plotting library in Docs (#482)
Verifying conserved quantities (#500)
Modified dynamics (#507)
PrimitiveDry and WetModel generation on Julia v1.9 hangs (#508)
The PrimitiveWetModel example fails (#515)
unbalanced initial condition for Galewsky Jet (#518)
Modularise netCDF output (#522)
Time stepping of particle tracking (#527)
Spectral filtering instead of hyperdiffusion (#547)
Instability develops over long integrations (#553)
arbitrary tracer support (#564)
RingGrids: Conflicting Broadcast Rules (#565)
Implement Heating as model component (#567)
RingGrids: N-dim Matrix/Array constructors (#570)
Simplified spectral transform towards GPU version (#575)
Driven by reanalysis data (#576)
spectral_grid sample of usage: should it say 'nlev', not 'nlayers'? (#581)
Set! discontinuous across prime meridian (#584)
Profiling of timestep (#594)
Differentiability of Spatial Gradients (#598)
Interactive 3D data visualisation directly on the grid (#599)
Stability Issues with Multiple Weather Trajectories Generation (#607)
How to use SpeedyWeather to diagnose model run instability caused by initial conditions. (#643)
Issue with Model Execution When trunc is Greater Than or Equal to 600 (#644)
Particle modulo bug (#655)
Feature Request: Kolmogorov Flow (#676)
Spatial generalisation (#682)
Grainy convection/precipitation in long simulations (#683)
NoVegetation broken (#688)
SpeedyWeather Colab Demo (#690)
Loading a previously-saved state and continuing a simulation (#703)
PrescribedOceanEvaporation is a misnomer (#705)
Error when adding surface pressure vector as netCDF output variable to model (#707)
Introduce Field to separate data from Grid (#709)
Move Documentation: Repository size (#711)
CI time (#721)
How to use simulation.prognostic_variables.ocean for SST forcing sensitivity tests in SpeedyWeather? (#741)
How to use simulation.prognostic_variables.ocean for SST forcing sensitivity tests in SpeedyWeather? (#742)
Allow Month, Year, Millenium (#744)

How to Output Mean Sea Level Pressure (MSLP) ?
(#752)

Implement parameter handling for Barotropic model (#753)
SpeedyWeather crashes after ~1 year of simulation with default parameters (#756)
Climate runs with SlabOcean are out of balance and crash (#761)
Register RingGrids as standalone package (#766)
Investigate using Enzyme to do a local sensitivity analysis for a single grid point w.r.t the initial state (#769)
CoupledClimate configuration for multi-decadal runs (#770)
Soil Moisture Availability going up to 2 instead of being capped at 1 (#771)
100year run works fine now (#772)
Need to include Land Surface and Ocean states in StartFromFile (re-starts) (#774)
Allow output to overwrite existing runs (#775)
Still to do: not all ICs read correctly from file (#795)
pointing to new input files to conduct land change experiments (#796)
Results after implementation of Stefan-Boltzmann at the surface (#800)
Transposed RingGrids.jl (#802)
Zenodo archive not created since v0.10 (#804)
Slow Runs for T127 (#819)
Output issue when running with timestep! rather than run! (#832)
SnowLand challenges (#843)
Use Dict or NamedTuple to hold variables (#847)
Pres is not in AllOutput variables (#851)
SpeedyWeather's tropics too cold (#856)
Extensions broken in SpeedyWeather v0.17 (#859)
Plotting Fields via globe doesn't work (#864)
OctaHEALPixGrid fails to initialise (#867)
GPU performance of land and sea ice model (#870)
Move SpeedyParameters to SpeedyWeatherInternals (#879)
Split tests across sub packages (#900)
Code Formatting (#910)
Find Enzyme+Speedy issue in uv_from_vordiv! (#938)
Example in Docs/Radiation fails (#954)
Using main branch in Julia v1.10 (#966)
NaNs appear after a few timesteps in BarotropicModel (T31, dt=2400s) after setting vorticity field (#972)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] 4 months ago

SpeedyWeather v0.17.4

Diff since v0.17.3

Merged pull requests:

More general forcing of pressure, vorticity and divergence (#855) (@milankl)
GPU version of parametrizations over ij (#878) (@maximilian-gelbrecht)
Revise Variables towards using NamedTuples and Modularity (#885) (@maximilian-gelbrecht)
Ring, nested and matrix order for OctaHEALPixGrid (#887) (@milankl)
SolarZenith and SolarZenithSeason constructors (#889) (@milankl)
Seasonal ocean and land models kernelized (#892) (@maximilian-gelbrecht)
Fix typo in architectures_gpu.md (#894) (@gregordecristoforo)
Vertical advection kernelized (#895) (@maximilian-gelbrecht)
Remove unnecessary double imports of architecture (#899) (@gregordecristoforo)
Set particle sigma to layer they are advected on (#902) (@milankl)
Barotropic Model initialization (mostly) on GPU (#903) (@maximilian-gelbrecht)
Coriolis and adiabatic conv adapted to GPU (#904) (@maximilian-gelbrecht)
ScratchMemory allocation bug (#905) (@milankl)
Fix allocating transform on GPU (#906) (@maximilian-gelbrecht)
Show for LowerTriangularArray/Matrix on CPU/GPU (#907) (@milankl)
Bump version from 0.17.3 to 0.17.4 (#908) (@milankl)

Closed issues:

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] 7 months ago

SpeedyWeather v0.17.3

Diff since v0.17.2

Merged pull requests:

Remove JOSS paper draft workflow (#874) (@dependabot[bot])
Move SpeedyParameters to SpeedyWeatherInternals (#880) (@bgroenks96)
Change particle tracking to every 4 hours (#881) (@milankl)
SpectralGrid constructor revised, e.g. from grid (#882) (@maximilian-gelbrecht)
Add missing compat entries for SpeedyWeatherInternals (#883) (@bgroenks96)

Closed issues:

Move SpeedyParameters to SpeedyWeatherInternals (#879)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] 8 months ago

SpeedyWeather v0.17.2

Diff since v0.17.1

Merged pull requests:

Leapfrog (re)start, Implicit reinitialize option, RestartFile, ProgressTxt, ParametersTxt as callback (#726) (@milankl)
More ScratchMemory handling for SpectralTransforms (#791) (@maximilian-gelbrecht)
Reduce GPU overhead (#824) (@maximilian-gelbrecht)
KA kernels for forcing and drag (#834) (@karinakowalczyk)
Mean sea-level pressure output (#853) (@milankl)
Implement surface wind and temperature outputs (#858) (@stella-bourdin)
Move Makie extensions to RingGrids and fix globe bug (#866) (@bgroenks96)
Update CITATION.cff (#869) (@milankl)
Enhance README with interactive usage example (#872) (@milankl)
Subpackages version 0.1.1 (#875) (@maximilian-gelbrecht)
Bump version to 0.17.2 (#877) (@maximilian-gelbrecht)

Closed issues:

Loading a previously-saved state and continuing a simulation (#703)

How to Output Mean Sea Level Pressure (MSLP) ?
(#752)

Zenodo archive not created since v0.10 (#804)
Pres is not in AllOutput variables (#851)
Plotting Fields via globe doesn't work (#864)
OctaHEALPixGrid fails to initialise (#867)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] 8 months ago

SpeedyWeather v0.17.1

Diff since v0.17.0

Merged pull requests:

Split Extensions across Subpackages (#846) (@maximilian-gelbrecht)
Metal extension (#849) (@milankl)
Fix correct array type for LTA init (#850) (@maximilian-gelbrecht)
Call callbacks before output (#852) (@milankl)
Add dynamics variables into AllOutputVariables (#854) (@stella-bourdin)
Bump SpeedyWeatherInternals to v0.1.1 (#860) (@bgroenks96)
Bump SpeedyWeather revision to v0.17.1 (#863) (@bgroenks96)

Closed issues:

Extensions broken in SpeedyWeather v0.17 (#859)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] 9 months ago

SpeedyWeather v0.17.0

Diff since v0.16.0

New features

A Thermodynamic sea ice model #814 and #811
Snow and reevaporation in large-scale condensation #817
A minimal barotropic model now runs on GPU #733
Add parameter handling system and implement for Barotropic model #754

Breaking changes

Move radius to model.planet #838
Introduce nothing as valid model component #822
Rename evaporation to surface humidity fluxes #818
Show architecture as "CPU"/"GPU" #809
Make dynamic Land/Ocean/SeaIce models the default #816

Merged pull requests:

Minimal barotropic model GPU compat (#733) (@milankl)
Add KA kernels for spectral transform legendre methods (#736) (@jackleland)
Add new parameter handling scheme for Barotropic model (#754) (@bgroenks96)
Fix Enzyme CI (#762) (@maximilian-gelbrecht)
Interpolation on GPU (#764) (@maximilian-gelbrecht)
nonparametric_type also for SubArray (#776) (@milankl)
CompatHelper: add new compat entry for ConstructionBase at version 1, (keep existing compat) (#777) (@github-actions[bot])
Overwrite output folder option (#782) (@milankl)
Restart from file for ocean and land (#784) (@milankl)
add a mailmap (#785) (@vchuravy)
Fix Haversine rounding errors with type promotion (#787) (@milankl)
Soil moisture field capacity (#788) (@milankl)
Towards PrimitiveDry on GPU (#792) (@maximilian-gelbrecht)
Jeevanjee surface fluxes with Stefan-Boltzmann and soil moisture field capacity (#794) (@pierluigividale)
Hotfix: remove explicit KA import to avoid import warnings (#798) (@maximilian-gelbrecht)
CompatHelper: add new compat entry for Atomix at version 1, (keep existing compat) (#799) (@github-actions[bot])
Fix admonition and typo on GPU-and-Architectures docs (#807) (@marcelovilla)
show architecture as "CPU"/"GPU" (#809) (@milankl)
Make all land model components mutable (#810) (@milankl)
Thermodynamic sea ice model (#811) (@milankl)
Keyword arguments for ImplicitPrimitiveEquation (#812) (@milankl)
ThermodynamicSeaIce testing (#814) (@milankl)
Towards standalone packages + ColumnFields (#815) (@maximilian-gelbrecht)
Make dynamic Land/Ocean/SeaIce models the default (#816) (@pierluigividale)
Snow fall from large-scale condensation (#817) (@pierluigividale)
Rename to surface humidity flux (#818) (@milankl)
Land with KernelAbstractions (#820) (@milankl)
Update CITATION.cff (#821) (@navidcy)
Introduce nothing as valid model component (#822) (@milankl)
ice thermodynamics in Clausius Clapeyron (#823) (@pierluigividale)
CompatHelper: bump compat for JLD2 to 0.6, (keep existing compat) (#825) (@github-actions[bot])
Bump actions/checkout from 4 to 5 (#826) (@dependabot[bot])
Fix some missing scratch memory usages (#828) (@maximilian-gelbrecht)
Fix output_dt for JLD2Output (#829) (@maximilian-gelbrecht)
Start with soil moisture, temperature, SST, sea ice from climatology (#830) (@milankl)
Compat entries for Subpackages (#835) (@maximilian-gelbrecht)
Rename SpeedyInternals to SpeedyWeatherInternals (#836) (@maximilian-gelbrecht)
Move radius to model.planet (#840) (@milankl)
Add compat entries of submodules to main env (#841) (@maximilian-gelbrecht)
Add logo to docs (#842) (@maximilian-gelbrecht)
More docs on GPU / on_architecture (#845) (@maximilian-gelbrecht)
Bump version from 0.16.0 to 0.17.0 (#848) (@milankl)

Closed issues:

Precipitation downscaling/bias correction interface (#370)
PrescribedOceanEvaporation is a misnomer (#705)
Implement parameter handling for Barotropic model (#753)
SpeedyWeather crashes after ~1 year of simulation with default parameters (#756)
Climate runs with SlabOcean are out of balance and crash (#761)
Investigate using Enzyme to do a local sensitivity analysis for a single grid point w.r.t the initial state (#769)
CoupledClimate configuration for multi-decadal runs (#770)
Soil Moisture Availability going up to 2 instead of being capped at 1 (#771)
100year run works fine now (#772)
Need to include Land Surface and Ocean states in StartFromFile (re-starts) (#774)
Allow output to overwrite existing runs (#775)
Still to do: not all ICs read correctly from file (#795)
pointing to new input files to conduct land change experiments (#796)
Results after implementation of Stefan-Boltzmann at the surface (#800)
Transposed RingGrids.jl (#802)
Output issue when running with timestep! rather than run! (#832)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] 9 months ago

SpeedyWeather v0.16.0

Diff since v0.15.0

Non-breaking changes

Move full differentiability tests to separate CI workflow #759
Type stability for particle advection #757
Scratch memory for SpeedyTransforms now part of DiagnosticVariables #680
Reworked GPU and utility code structure and added GPU versions of spectral gradients#727
Added animate to animate a NetCDF output file with GeoMakie #755
Makie v0.24 compatibility #750
Fixed an error in the LowerTriangularArrays documentation #749
Add Millenium and Century periods and allow conversion of Month and Year to seconds #746
Return UnicodePlot after run! if UnicodePlots.jl is loaded #748
git-auto-commit-action v6 #747
Makie v0.23 compatibility #743
LowerTriangularArray-preserving view #739
Array-agnostic LowerTriangularMatrix #738
Major rework of LowerTriangularArrays: Introduce Spectrum type, changes in indexing and constructors #734
Reduce CI time #731
Remove DocsPreviewCleanup workflow #730
Move UnicodePlots to extension #728
Baroclinic wave initial conditions ZonalWind divergence free #729
reverse and reverse! for LowerTriangularArray, in longitude or latitude #720
Speed up CI for land models #719
Move documentation to SpeedyWeatherDocumentation repository #713, #722, #723, and #725
Ensure docs don't deploy with .jld2 or .nc files #724

Breaking changes

Use views instead of unpacking a tuple for 2-step prognostic variables #745

This means prognostic variables are now indexed with [ij, k, lf] (horizontal grid point ij, vertical layer k, leapfrog time step lf) instead of [lf][ij, k]

Introduce Field for data on grid #732

The meaning of grid/Grid changed, it is considered to not contany any data but only holds resolution, architecture (CPU/GPU) and indices. A Field is data on a grid. Many fields can share the same grid. Some changes arose for the construction of grids/fields.

Merged pull requests:

SpeedyTransforms scratch memory part of DiagnosticVariables (#680) (@maximilian-gelbrecht)
Move docs to SpeedyWeatherDocumentation (#713) (@milankl)
Speed up CI for land (#719) (@milankl)
Reverse for LowerTriangularArray (#720) (@milankl)
Move Documentation to a separate repo, take #2 (#722) (@navidcy)
Update docs/dev link in README (#723) (@navidcy)
Remove jld2 & nc files from docs after make before deploy (#724) (@milankl)
Update docs urls (#725) (@navidcy)
Restructure (GPU) utilities and work towards spectral gradients GPU (#727) (@maximilian-gelbrecht)
Move UnicodePlots to extension (#728) (@milankl)
Baroclinic wave divergence free (#729) (@milankl)
Remove DocPreviewCleanup workflow (#730) (@milankl)
Reduce CI time (#731) (@milankl)
Introduce Field for data on grid (#732) (@milankl)
Introduce Spectrum for LowerTriangularArrays (#734) (@milankl)
Array-agnostic LowerTriangularMatrix (#738) (@milankl)
Add view that returns a LowerTriangularArray (#739) (@milankl)
CompatHelper: bump compat for Makie in [weakdeps] to 0.23, (keep existing compat) (#743) (@github-actions[bot])
Use view instead of tuple for prognostic variables (#745) (@milankl)
More shameless piracy on the high seas of time (#746) (@bgroenks96)
Bump stefanzweifel/git-auto-commit-action from 5 to 6 (#747) (@dependabot[bot])
Return UnicodePlots after run! when UnicodePlots.jl is loaded (#748) (@milankl)
Fix LTA docs (#749) (@maximilian-gelbrecht)
CompatHelper: bump compat for Makie in [weakdeps] to 0.24, (keep existing compat) (#750) (@github-actions[bot])
GeoMakie extension: animate simulation function (#755) (@maximilian-gelbrecht)
Adjust particles for GPU (#757) (@maximilian-gelbrecht)
Release v0.16 (#758) (@milankl)
Move full differentiability tests outside of regular tests (#759) (@maximilian-gelbrecht)

Closed issues:

Jablonowski test case (#265)
Feature Request: Kolmogorov Flow (#676)
Spatial generalisation (#682)
SpeedyWeather Colab Demo (#690)
Introduce Field to separate data from Grid (#709)
Move Documentation: Repository size (#711)
CI time (#721)
How to use simulation.prognostic_variables.ocean for SST forcing sensitivity tests in SpeedyWeather? (#741)
How to use simulation.prognostic_variables.ocean for SST forcing sensitivity tests in SpeedyWeather? (#742)
Allow Month, Year, Millenium (#744)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] 11 months ago

SpeedyWeather.jl - v0.15.0

SpeedyWeather v0.15.0

Diff since v0.14.0

Breaking changes

Make KolmogorovFlow forcing default for BarotropicModel #687

Non-breaking changes

RingGrid and LowerTriangularArray longitude rotation #710
ImplicitShallowWater without precomputed arrays #717
CUDA-ised spectral transform #602
Fix isapprox for particles with longitude modulo #714
Fix docustring rendering #712
Updated documentation to include four illustrative figures in the large-scale precipitation and convection sections #702
Added documentation to output surface variables #708
get_gridcell_polygons in RingGrids #706
Revised extended CI tests for differentiability can be launched on comment in PRs #695, #696, #697, #698
Reverse for AbstractGridArrays #691
LandGeometry, LandThermodynamics as component of LandModel, DryLandModel #677
Diagnostic albedo separate for ocean/land #677
Increasing precision for accumulated precipitation output #685
Allow steps to be specified for for run!(simulation, steps=n) #684
Restrict extended CI tests to Julia v1.10 (due to Enzyme) #681
SigmaCoordinates constructors #679
Full timestepping differentiable by Enzyme with Julia 1.10 #656
Type instabilities etc flagged by Reactant #674
Added JLD2 Output to directly output PrognosticVariables and DiagnosticVariables #675
Compat for GPUArrays v11, JLArrays 0.2, KernelAbstractions 0.9 #658
MITgcm's 2-layer land bucket model #672
Fix grid_cell_average! bugs for some grids and resolutions #673
Interfaces for interpolation of AbstractGridArray #671
Test folder sorted into subfolders #671
Land model modularised + land netCDF output #671

Merged pull requests:

Implementation of CUDA-ised transform (#602) (@jackleland)
Differentiability tests for time stepping (#656) (@maximilian-gelbrecht)
bump compat to GPUArrays v11, JLArrays v0.2, KernelAbstractions 0.9 (#658) (@milankl)
Land model modularised (#671) (@milankl)
Grid cell average bug fixes (#673) (@milankl)
Changes for Reactant.jl (#674) (@milankl)
JLD2 Output (#675) (@maximilian-gelbrecht)
Modular land model + diagnostic albedo, independent for ocean/land (#677) (@milankl)
SigmaCoordinates double-defined () constructor (#679) (@milankl)
Extended tests only on 1.10 (#681) (@maximilian-gelbrecht)
run! with steps argument (#684) (@milankl)
Increase output precision for accumulated precip (#685) (@milankl)
Make KolmogorovFlow default for BarotropicModel (#687) (@milankl)
Reverse for AbstractGridArray (#691) (@milankl)
Extended tests on comment and (maybe) all passing (#695) (@maximilian-gelbrecht)
Extended tests launched on comment on PR branch (#696) (@maximilian-gelbrecht)
Revising extended tests (#697) (@maximilian-gelbrecht)
Bump xt0rted/pull-request-comment-branch from 1 to 3 (#698) (@dependabot[bot])
Documentation of convection (#702) (@sunmoumou1)
Move get_faces function from extension to RingGrids (#706) (@milankl)
Documentation: surface variable output (#708) (@maximilian-gelbrecht)
RingGrid and LowerTriangularArray (longitude) rotation (#710) (@milankl)
Fix docstring rendering (#712) (@navidcy)
Add mod(lon, 360) for isapprox particles (#714) (@milankl)
Shallow water implicit without precomputed arrays (#717) (@milankl)
bump to v0.15 (#718) (@milankl)

Closed issues:

Simplified spectral transform towards GPU version (#575)
Particle modulo bug (#655)
Grainy convection/precipitation in long simulations (#683)
NoVegetation broken (#688)
Error when adding surface pressure vector as netCDF output variable to model (#707)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] about 1 year ago

SpeedyWeather.jl - v0.14.0

SpeedyWeather v0.14.0

Diff since v0.13.0

Breaking changes

Precipitation is not outputted anymore by default, use add!(model, SpeedyWeather.PrecipitationOutput()...) now
Coordinates defined in degrees lond, latd, not colat, lon https://github.com/SpeedyWeather/SpeedyWeather.jl/pull/647

Merged pull requests:

Add tracer advection (#579) (@milankl)
Change timestep to 40min at T31 (#623) (@milankl)
NBandRadiation scheme for longwave outgoing (#633) (@milankl)
Number format flexibility with set! (#634) (@rocroc2017)
Forcing/drag for primitive models too (#635) (@milankl)
Roll back GPUArrays upgrade (#636) (@maximilian-gelbrecht)
RingGrinds more general indexing with Colon (less escapes) (#637) (@maximilian-gelbrecht)
Spectral Gradients Gradients (#638) (@maximilian-gelbrecht)
ConvectiveHeating implemented (#639) (@milankl)
GPU CI Pipeline (#645) (@maximilian-gelbrecht)
Dummy Buildkite Pipeline (#646) (@maximilian-gelbrecht)
Grid coordinates defined in degrees not colatitudes and radians (#647) (@milankl)
Clamp in ZonalWind to [0, 1] for sqrt (#649) (@milankl)
set! for time step (#650) (@milankl)
CI Extended Tests on 1.10 as well (#651) (@maximilian-gelbrecht)
Group initialize!, timestep!, finalize! of main time loop (#652) (@milankl)
New output variables definition simplified (#653) (@milankl)
bug: south pole at -90 for vertices (#654) (@milankl)
NetCDF output for tracers, precipitation rates at initialize! again (#657) (@milankl)
First timesteps in main loop (#659) (@milankl)
CompatHelper: bump compat for Makie in [weakdeps] to 0.22, (keep existing compat) (#663) (@github-actions[bot])
Prescribed surface heat and evaporative fluxes (#664) (@milankl)
AbstractVectors in interpolation.jl (#665) (@milankl)
Initialize simulation restructured (#666) (@milankl)
Surface fluxes modular on ocean and land (#667) (@milankl)
[LowerTriangularMatrices] Sum for LTA (#668) (@maximilian-gelbrecht)
Precipitation rate for coupling (#669) (@milankl)
Bump to v0.14 (#670) (@milankl)

Closed issues:

Design choices towards stochastic parameterizations (#199)
Modified dynamics (#507)
arbitrary tracer support (#564)
Implement Heating as model component (#567)
Profiling of timestep (#594)
Differentiability of Spatial Gradients (#598)
How to use SpeedyWeather to diagnose model run instability caused by initial conditions. (#643)
Issue with Model Execution When trunc is Greater Than or Equal to 600 (#644)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] over 1 year ago

SpeedyWeather.jl - v0.13.0

SpeedyWeather v0.13.0

Diff since v0.12.1

Merged pull requests:

SpeedyTransforms: Differentiable transforms via custom Enzyme rule (#589) (@maximilian-gelbrecht)
CompatHelper: bump compat for GPUArrays to 11 and JLArrays to 0.2, (keep existing compat) (#590) (@github-actions[bot])
Rossby-Haurwitz wave initial conditions for eta (#604) (@rivwgk)
Optical depth parameterization + array-agnostic ColumnVariables (#606) (@milankl)
large-scale condensation at <100% (#609) (@minqi6)
Slab ocean and net surface and top-of-atmosphere fluxes (#613) (@milankl)
Include large-scale condensation tests (#615) (@milankl)
Power spectrum for n-dimensional LowerTriangularArray (#618) (@milankl)
CompatHelper: add new compat entry for FiniteDifferences in [weakdeps] at version 0.12, (keep existing compat) (#620) (@github-actions[bot])
CompatHelper: add new compat entry for Enzyme in [weakdeps] at version 0.13, (keep existing compat) (#622) (@github-actions[bot])
One band longwave radiation implemented (#624) (@milankl)
[SpeedyTransforms] Restrict finite difference tests to one grid only (#625) (@maximilian-gelbrecht)
[SpeedyTransforms] Exclude second differentiation identity test for OctahedralGrid (#627) (@maximilian-gelbrecht)
Introduce separate extended tests in CI (#628) (@maximilian-gelbrecht)
AbstractStochasticPhysics and SPPT (#629) (@milankl)
AbstractSurfacePerturbation (#631) (@milankl)
bump to v0.13 (#632) (@milankl)

Closed issues:

Driven by reanalysis data (#576)
Stability Issues with Multiple Weather Trajectories Generation (#607)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] over 1 year ago

SpeedyWeather.jl - v0.12.1

SpeedyWeather v0.12.1

Diff since v0.12.0

Merged pull requests:

GeoMakie extension and interactive 3D grid visualisation on the sphere (#600) (@milankl)
Array-agnostic horizontal diffusion, +modularised (#601) (@milankl)
Define zonal_mean for any AbstractGridArray (#603) (@milankl)
Update README.md with dataviz (#608) (@milankl)
set! for boundary conditions (#611) (@milankl)
ConstantLandTemperature implemented (#612) (@milankl)

Closed issues:

Spectral filtering instead of hyperdiffusion (#547)
Interactive 3D data visualisation directly on the grid (#599)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] over 1 year ago

SpeedyWeather.jl - v0.12.0

SpeedyWeather v0.12.0

Diff since v0.11.0

Merged pull requests:

Feedback.verbose coupled to isinteractive() (#582) (@milankl)
Array-agnostic SpectralTransform (#583) (@milankl)
Stop supporting Julia 1.9 (#585) (@milankl)
Move CUDA to extension (#586) (@milankl)
Do not interweave transform (#587) (@milankl)
Add Haversine and general spherical_distance and AbstractSphericalDistance functionality (#588) (@treigerm)
Rossby-Haurwitz wave initial conditions +docs (#591) (@milankl)
SpectralAR1Process and AbstractRandomProcess (#592) (@milankl)
Model constructors with positional SpectralGrid argument (#593) (@milankl)
Introduce OctaminimalGaussianArray; smaller, faster but less accurate (#595) (@milankl)
NetCDF output: Precipitation accumulated and rate (#596) (@milankl)
Bump to v0.12 (#597) (@milankl)

Closed issues:

Performance of the spectral transform (#32)
Set! discontinuous across prime meridian (#584)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] over 1 year ago

SpeedyWeather.jl - v0.11.0

SpeedyWeather v0.11.0

Diff since v0.10.0

Merged pull requests:

Restructured dynamical core, variables array-agnostic and 3-dimensional, modular netCDF output (#525) (@milankl)
Change LowerTriangularArrays to be subtype of AbstractArray{T,N-1} (#543) (@maximilian-gelbrecht)
JOSS paper citation (#548) (@navidcy)
Bump actions/upload-artifact from 1 to 4 (#550) (@dependabot[bot])
Bump actions/checkout from 3 to 4 (#551) (@dependabot[bot])
Bump stefanzweifel/git-auto-commit-action from 4 to 5 (#552) (@dependabot[bot])
All parameterizations at prev timestep, flux limiters removed (#555) (@milankl)
Create CHANGELOG.md (#559) (@milankl)
LTA: copyto! for Vectors (#561) (@maximilian-gelbrecht)
LTA: colon indexing for LTM (#562) (@maximilian-gelbrecht)
Set! function for PrognosticVariables and ICs for new structure (#563) (@maximilian-gelbrecht)
New 4D Variable Structure: nlayers instead of nlev; starting to adjust docs (#566) (@maximilian-gelbrecht)
Fix RingGrid broadcast issue with mismatching dimensions (#568) (@maximilian-gelbrecht)
RingGrids: Fix RingGrids Array conversion (#572) (@maximilian-gelbrecht)
NetCDF output modularised (#573) (@milankl)
CompatHelper: bump compat for JLD2 to 0.5, (keep existing compat) (#574) (@github-actions[bot])
Benchmarks for individual dynamics functions (#577) (@maximilian-gelbrecht)
set! for orography (#578) (@milankl)
Set! documentation / keywords (#580) (@maximilian-gelbrecht)

Closed issues:

Example GPU kernels (#121)
Modularise netCDF output (#522)
Instability develops over long integrations (#553)
RingGrids: Conflicting Broadcast Rules (#565)
RingGrids: N-dim Matrix/Array constructors (#570)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] over 1 year ago

SpeedyWeather.jl - v0.10.0

SpeedyWeather v0.10.0

Diff since v0.9.0

Merged pull requests:

JOSS paper (#387) (@milankl)
Scheduler for callbacks (#488) (@milankl)
Zenodo DOI added (#489) (@milankl)
Schedule bug with millisecond time steps (#490) (@milankl)
Update README.md with particle advection video (#491) (@milankl)
Field trees (#492) (@milankl)
Export coriolis, unscale diagnostics at finish, add! callbacks directly to model too (#494) (@milankl)
Trees with summarysize (#495) (@milankl)
ConstantOceanClimatology, AquaPlanet (#496) (@milankl)
Document typical online analysis steps (#497) (@milankl)
Convection with work arrays for thread safety (#498) (@milankl)
Bulk Richardson-based vertical diffusion (#499) (@milankl)
LowerTriangularMatrix copyto! range bug (#501) (@milankl)
Jeevanjee longwave radiation (#502) (@milankl)
LowerTriangularMatrices: N-dimensional and GPU ready (#503) (@maximilian-gelbrecht)
Add to analysis doc (from new branch) (#505) (@milankl)
Broadcasting for RingGrids (#506) (@milankl)
Benchmark overview (#509) (@milankl)
Large-scale condensation documented (#510) (@milankl)
Add Makie extension (#511) (@milankl)
Convection documentation (#512) (@milankl)
Radiation documentation (#513) (@milankl)
Held-Suarez example, NoTypes for surface fluxes (#514) (@milankl)
Bump julia-actions/setup-julia from 1 to 2 (#516) (@dependabot[bot])
Remove PythonPlot dependency of docs (#517) (@milankl)
Model construction without type constraints (#519) (@milankl)
AbstractGridArray N-dimensional and GPU ready (#520) (@milankl)
Exports more gradient operators from SpeedyTransforms (#523) (@milankl)
Change weight in ZonalJet() (#524) (@miniufo)
Orography documented (#526) (@milankl)
Particle advection time stepping corrected (#528) (@milankl)
Humidity video for readme (#529) (@milankl)
Surface flux documentation (#530) (@milankl)
Add explicit arithmetics again to LowerTriangularArrays (#531) (@maximilian-gelbrecht)
Vertical diffusion documentation (#532) (@milankl)
Ocean model documentation (#533) (@milankl)
Parameterization structure documented (#534) (@milankl)
Bump Makie compat (#535) (@asinghvi17)
Docs clarification: Parameterization for primitive models only (#536) (@milankl)
Restructure docs following #443 (#537) (@milankl)
Scale orography and smooth fraction of resolved wavenumbers (#538) (@milankl)
StochasticStirring example with CairoMakie (#539) (@milankl)
Horizontal diffusion not adaptive (#540) (@milankl)
Large-scale condensation at previous time step (#541) (@milankl)
Surface fluxes calculated from previous time step (#542) (@milankl)
bump to v0.10 (#545) (@milankl)

Closed issues:

Physical parameterizations: inconsistencies between speedy.f90 and the Speedy Documentation (#126)
Progress towards primitive equations (#192)
Divergence of (hu, hv, h) (#372)
Initial conditions from PDEArena (#377)
Conserved quantity verifying (#400)
shallow-water case for a global ocean (#412)
[JOSS review] Nat's Review of SpeedyWeather.jl (#443)
[JOSS Review] questions + suggestions (#446)
[JOSS review] Zenodo archival (#448)
Another simple radiation scheme (#456)
Automatic performance testing (#464)
JOSS review: text comments (#480)
Replace PythonPlot with a Julia-based plotting library in Docs (#482)
Verifying conserved quantities (#500)
PrimitiveDry and WetModel generation on Julia v1.9 hangs (#508)
The PrimitiveWetModel example fails (#515)
unbalanced initial condition for Galewsky Jet (#518)
Time stepping of particle tracking (#527)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] about 2 years ago

SpeedyWeather.jl - v0.9.0

SpeedyWeather v0.9.0

Diff since v0.8.0

Merged pull requests:

Solar zenith angle calculation (#438) (@milankl)
ImmediateCondensation and Clausius-Clapeyron (#439) (@milankl)
Flux limiters for surface drag and heat fluxes (#440) (@milankl)
Bulk Richardson number-based boundary layer drag (#441) (@milankl)
Simplified BettsMiller convection (#442) (@milankl)
Simple radiation schemes: UniformCooling, TransparentShortwave (#444) (@milankl)
ImplicitCondensation not immediate anymore (#447) (@milankl)
AquaPlanetMask (#450) (@milankl)
Use Documenter.@docs functionality to display docstring in Documentation (#451) (@navidcy)
Run LowerTriangularMatrix and output examples while building the docs (#453) (@navidcy)
Some more examples running live in the Docs (#454) (@navidcy)
Callbacks (#455) (@milankl)
Restructuring the docs (#457) (@milankl)
Collapse levels to streamline the documentation navigation (#458) (@natgeo-wong)
Parametric models, non-parametric abstract types, remove DynamicsConstants, Dict of callbacks (#459) (@milankl)
Particle advection in 2D, all models (#465) (@milankl)
Dry Betts-Miller convection (#467) (@milankl)
Add dependabot (#468) (@milankl)
Initial conditions modular for variables (#469) (@milankl)
Remove DEFAULT_NF generators of Earth and EarthAtmosphere (#470) (@milankl)
Bump actions/cache from 3 to 4 (#471) (@dependabot[bot])
Bump actions/checkout from 3 to 4 (#472) (@dependabot[bot])
Add space after comma (#473) (@navidcy)
Change arg name for isincreasing/isdecreasing to agree w docstring (#474) (@navidcy)
Fix the Docs/SpeedyTransforms/Geostrophy example + make it run live by doc built (#475) (@navidcy)
Remove testing for 1.8 and 1.9 temporarily (#476) (@milankl)
Add space after semicolon (#477) (@navidcy)
Delete deprecated doc instructions (#479) (@navidcy)
Add @ids for model pages + add links to models pages in Docs landing page (#481) (@navidcy)
ParticleTracker with netCDF (#484) (@milankl)
rand(Particle) cos-distribution corrected (#485) (@milankl)
Update README.md (#486) (@milankl)
Bump to v0.9 (#487) (@milankl)

Closed issues:

online particle tracking (#413)
Convection too weak?! (#436)
Condensation fireworks (#445)
[JOSS Review] firstnames vs. initials in .bib file (#449)
Question about example in Docs/SpeedyTransforms/Geostrophy (#452)
Precompilation Error (#466)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] about 2 years ago

SpeedyWeather.jl - v0.8.0

SpeedyWeather v0.8.0

Diff since v0.7.1

Merged pull requests:

Make prognostics available for forcing, drag in Barotropic/SWM (#423) (@milankl)
Stochastic stirring video (#424) (@milankl)
Add random wave video (#425) (@milankl)
Export forcing!, drag!, etc for extending those with fewer conflicts (#426) (@milankl)
CompatHelper: bump compat for Adapt to 4, (keep existing compat) (#427) (@milankl)
Use Julia v1.10 for CI and building Docs (#428) (@navidcy)
Add compat entry for NCDatasets v0.14 (#429) (@navidcy)
Adjust time step with radius (#430) (@milankl)
Add remark about Julia compat (#431) (@navidcy)
Switch off dynamics (#432) (@milankl)
Vertical diffusion of humidity (#433) (@milankl)
NoBoundaryLayer but TemperatureRelaxation default for dry & wet models (#435) (@milankl)
bump to v0.8 (#437) (@milankl)

Closed issues:

Literated example with the animation that is currently in README? (#297)
Global shallow-water run (#323)
Hybrid vertical coordinates (#329)
What constitutes the 'state' of the model at a particular timestep (#347)
SpeedyWeather's logic and information flow (#350)
Zanna & Bolton eddy parameterization (#402)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] over 2 years ago

SpeedyWeather.jl - v0.7.1

SpeedyWeather v0.7.1

Diff since v0.7.0

Merged pull requests:

Period Keyword Argument instead of n_days (#420) (@maximilian-gelbrecht)
JOSS badge added (#421) (@milankl)
bump to v0.7.1 (#422) (@milankl)

Closed issues:

Given user-facing parameters that represent a time period actually units (#417)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] over 2 years ago

SpeedyWeather.jl - v0.7.0

SpeedyWeather v0.7.0

Diff since v0.6.0

Merged pull requests:

Forcing and drag for the ShallowWaterModel (#376) (@milankl)
eta/pres was not output (#378) (@milankl)
RandomWaves initial conditions (#379) (@milankl)
scale_coslat funcs without Geometry, moved to RingGrids (#381) (@milankl)
Set lmax+1 row to zero in divergence!, curl! (#383) (@milankl)
Output via NCDatasets.jl, remove NetCDF.jl deps (#384) (@milankl)
Pretty printing for structs (#385) (@milankl)
Model setups documented (#386) (@milankl)
Land-sea mask (#389) (@milankl)
Bug: First NetCDF time step is always 2000-01-01 (#390) (@milankl)
Coriolis and div,curl,laplace convience functions (#392) (@milankl)
Accumulate vor/div tendencies (#393) (@milankl)
Ocean/Land for prognostic variables added (#395) (@milankl)
CompatHelper: bump compat for CUDA to 5, (keep existing compat) (#396) (@milankl)
Documentation: Extending SpeedyWeather.jl (#397) (@milankl)
CompatHelper: bump compat for FastGaussQuadrature to 1, (keep existin… (#398) (@milankl)
Surface fluxes of heat, moisture and momentum: Land and ocean seasonal climatology (#399) (@milankl)
CompatHelper: bump compat for NCDatasets to 0.13, (keep existing compat) (#401) (@milankl)
Soil moisture and vegetation (#403) (@milankl)
Overhauled initial conditions for humidity (#404) (@milankl)
Output cloud top [Pa], condensation simplified (#405) (@milankl)
NetCDF output with BFloat16 (#407) (@milankl)
plot(::LowerTriangularMatrix) (#408) (@milankl)
Simplify default vertical coordinate spacing to equi-distant with sigma (#409) (@milankl)
Convection (#414) (@milankl)
Fix load_trajectory (#415) (@maximilian-gelbrecht)
Output_dt in leapfrog time stepping and some adjustments for using Dates (#418) (@maximilian-gelbrecht)
Bump to v0.7 (#419) (@milankl)

Closed issues:

References for the dynamical core (#45)
Use logging infrastructure for feedback messages (#68)
Number format-flexibility (#137)
Forcing and climatology in the shallow water system (#151)
Liniting (#220)
16 bit model (#375)
divergence! should set last row to zero (#382)
plotting error with Float32sr spectralgrid! (#388)
Shallow water run (#391)
Barotropic vorticity model: Stochastic stirring (#394)
run BarotropicModel T21 with BFloat16 and output (#406)
low precision stochastic rounding (#411)
Output time axis: option to adhere to output_dt exactly (#416)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] over 2 years ago

SpeedyWeather.jl - v0.6.0

SpeedyWeather v0.6.0

Diff since v0.5.0

Closed issues:

16-bit FFT (#31)
Expanding the Documentation (#263)
Cannot run example on non-GPU system (#282)
Windows permssions problem (#285)
Precompilation warnings? (#296)
Away from monolithic run_speedy()? (#320)
CI runs on latest Julia release -- should we add more? (#325)
Query about computational resources (#342)
CI test on supported Julia versions? (#359)
Precompilation errors of IrrationalConstants dependency (#366)
SpectralGrid not defined in v0.5 (#367)

Merged pull requests:

New SpectralGrid, Model, initialize!, simulation, run! structure (#327) (@milankl)
Add clarification for SWE variables (#332) (@navidcy)
Update README.md (#333) (@milankl)
RingGrids and LowerTriangularMatrices docs (#335) (@milankl)
remove Model from SpectralGrid (#336) (@milankl)
Update README.md (#337) (@milankl)
SpeedyCondensation implemented (#338) (@milankl)
Update README.md (#339) (@milankl)
NetCDF output documented (#340) (@milankl)
Barotropic vorticity equation algorithm described (#341) (@milankl)
barotropic, shallowwater test cases (#343) (@milankl)
absolute paths docs img (#344) (@milankl)
Run examples and produce output with every Docs built (#345) (@navidcy)
Plot ::AbstractGrid as Unicode heatmap (#346) (@milankl)
Barotropic, shallow water, and some primitive model documentation (#348) (@milankl)
Update README.md with logo (#349) (@milankl)
Fix typos in docs (#351) (@pitmonticone)
Fix typos in mk/docs (#352) (@pitmonticone)
Move clock to prognostic variables (#353) (@milankl)
plot small grids without spaces (#354) (@milankl)
Non-adaptive implicit: temp_profile in implicit only (#355) (@milankl)
SpectralTransform for square LowerTriMats too (#356) (@milankl)
CompatHelper: bump compat for KernelAbstractions to 0.9, (keep existi… (#357) (@milankl)
Support KernelAbstractions 0.9 (#358) (@vchuravy)
Other video for primitive (#360) (@milankl)
CI tests on Julia 1.8, 1.9 + test on Julia nightly every week (#361) (@milankl)
Different vertical advection schemes (#362) (@simone-silvestri)
SpeedyTransforms documentation (#363) (@milankl)
Increase test tolerance (#364) (@milankl)
Primitive equation documentation (#365) (@milankl)
Bugfix in vertical advection (#368) (@simone-silvestri)
Speedstring precompilation warning (#369) (@milankl)
Full and octahedral Gaussian grid documented (#371) (@milankl)
get_truncation(::AbstractGrid) (#373) (@milankl)
bump to v0.6 (#374) (@milankl)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] almost 3 years ago

SpeedyWeather.jl - v0.5.0

SpeedyWeather v0.5.0

Diff since v0.4.0

Closed issues:

Parallelism in the vertical (#20)
Pretty printing (#57)
Horizontal domain decomposition for parametrizations (#83)
Overhaul approach to physical constants and model parameters (#86)
Consistency between NetCDF output grid and internal grid? (#146)
OctahedralGaussianGrid not defined (#168)
Variable initialisation (#170)
Inconsistency of pressure variable in convection parametrizations (#171)
Use PsychroLib for psychrometric calculations (#172)
Precision of Time Output in NetCDF Files (#180)
Move to SpeedyWeather orga (#182)
Move parameterisations into folder (#183)
Discuss general API (#184)
Solution struct / return the Output struct (#185)
Pre-compilation warnings (#194)
Gradients in spectral space ref in Docs/Dynamical Core is broken (#203)
Merging strategy (#214)
Abstraction, type-hierarchy and modularity (#222)
Not more than 70 vertical levels (#228)
Outsourcing packages (#231)
Incompatible with Julia 1.7? (#232)
Unable to open output files using NCDatasets.jl (#236)
First output timestep is < 6 hours. (#237)
semi-implicit corrections (#252)
Linearize virtual temperature for geopotential? (dynamics only) (#254)
Renaming in Prognostic/DiagnosticVariables (#255)
Crazy temperatures: Vertical advection bug? (#257)
Output time precision (again) (#266)
Vertical advection instability? (#271)
Not thread-safe / bit reproducible ?! (#272)
Missing (-1)^{n+1} factor from hyperdiffusion term (#286)
Greenland whole column instability at T255 (#289)
Broken precompilation on Linux? (#294)
Temperature profiles, forcing vs implicit (#299)
Power spectrum (#304)
Diffusion scaling (#306)
Vertical diffusion (#309)
Topography smoothing (#310)
Static energy diffusion (#311)

Merged pull requests:

Add shortwave radiation parametrization (#169) (@dmey)
Adapt functions (#173) (@katharinamaetschke)
CompatHelper: bump compat for FastGaussQuadrature to 0.5, (keep existing compat) (#174) (@github-actions[bot])
run_speedy!(progn,diagn,model) (#175) (@milankl)
Use BarotropicModel instead of :barotropic etc (#176) (@milankl)
Add longwave radiation parametrization (#177) (@dmey)
Update copyright and licensing information (#179) (@dmey)
allocate arrays filled with nans (#181) (@milankl)
Output Time Int64 and Custom Run_Id (#186) (@maximilian-gelbrecht)
Adapt functions DefineDiffusion, DefineImplicit and Geometry (#187) (@katharinamaetschke)
Geopotential calculation (#188) (@milankl)
Surface pressure tendency (#189) (@milankl)
Vertical velocity dsigma/dt (#191) (@milankl)
Keep GPU branch up-to-date with Main (#193) (@maximilian-gelbrecht)
add_tendencies! updated to LowerTriangularMatrix (#195) (@milankl)
Bernoulli potential for PrimitiveEquation (#196) (@milankl)
Virtual temperature calculation (#197) (@milankl)
Vertical advection of u,v + tendencies (vor, pres grads) (#198) (@milankl)
Fix link to doc in README.md (#200) (@dmey)
Fix typo (#202) (@navidcy)
-Dbar in spectral; a,b work arrays; humidity advection; vorticity_flux_divcurl! with flags (#204) (@milankl)
Temperature equation and primitive equation time stepping (#205) (@milankl)
temp, pres initial conditions at rest (#206) (@milankl)
mountain on/off/scale as parameter (#207) (@milankl)
test ∇×∇=0 and ∇⋅∇=∇² (#208) (@milankl)
horizontal_diffusion! generalised to ::ModelSetup (#209) (@milankl)
Reformulated temperature equation (#210) (@milankl)
Overhauled vertical advection (#211) (@milankl)
Interpolation: AbstractGrid -> arbitrary grid (#212) (@milankl)
In-place and more efficient eachring computation (#213) (@milankl)
add colorbar to unicodeplots (#215) (@milankl)
typo in vertical advection (#216) (@milankl)
Parameters{Model<:ModelSetup} and orography abstracted (#217) (@milankl)
Add mini development notes (#221) (@dmey)
ZonalRidge orography added, Geometry with lond,latd (#223) (@milankl)
u,v_grid instead of U,V_grid; /coslat in spectrans (#224) (@milankl)
interpolate, interpolate! between grids (#225) (@milankl)
NetCDF output with interpolator (#226) (@milankl)
Obtain n_stratosphere_levels from default parameter sigma_tropopause (#227) (@milankl)
add convenience interpolate method, show ring info for grids (#229) (@milankl)
InitialConditions abstracted (#230) (@milankl)
Scaling centralised, output on adjustable grid sizes (#233) (@milankl)
Rename to OctaHEALPixGrid (#234) (@milankl)
started grid documentation (#235) (@milankl)
Adapt docs to SpeedyWeather orga (#238) (@milankl)
Galewsky 2004 initial conditions for shallow water (#239) (@milankl)
update @ref in docs (#240) (@milankl)
restructure into folders and submodules (#241) (@milankl)
grids comparison.png link corrected (#243) (@milankl)
Update README.md (#244) (@milankl)
New normalization for automatic sigma levels (#245) (@milankl)
remove callside @inline as this requires 1.8 (#246) (@milankl)
Galewsky init conditions modifiable in default params (#247) (@milankl)
CompatHelper: bump compat for CUDA to 4, (keep existing compat) (#248) (@milankl)
Jablonowski and Williamson initial conditions (#249) (@milankl)
JW06 pressure constant (#250) (@milankl)
Semi-implicit corrections for primitive equations (#251) (@milankl)
Update README.md (#253) (@milankl)
Primitive equation dry core bughunt (#256) (@milankl)
Utility function load_trajectory added (#258) (@maximilian-gelbrecht)
Use Temporary Files for Test Output (#261) (@white-alistair)
copy! for PrognosticVariables (#262) (@maximilian-gelbrecht)
Multi-threading added (#264) (@milankl)
Boundary layer scheme from Held and Suarez (#269) (@milankl)
Held Suarez temperature forcing (#270) (@milankl)
Update README.md (#273) (@milankl)
Make default RNG seed deterministic (#274) (@white-alistair)
Reduce memory: no U,V,bernoulli in DiagnVariables (#275) (@milankl)
Shorten implicit geopotential k:nlev (#276) (@milankl)
Planet abstracted, Earth <: Planet (#277) (@milankl)
Hyper diffusion overhauled (#278) (@milankl)
primitive equation video in readme (#279) (@milankl)
TemperatureRelaxation, BoundaryLayer type stable (#280) (@milankl)
Merge main into mk/parameterizations (#281) (@milankl)
Missing (-1)^{n+1} factor from hyperdiffusion term (#283) (@navidcy)
Add spaces after commas (#284) (@navidcy)
restructure PrognosticVariables (#287) (@milankl)
Docs for Parameters (#288) (@navidcy)
Dealiasing parameter for quad,cub truncation (#290) (@milankl)
Better docs rendering (#291) (@navidcy)
Diffusion tapering for stratosphere (#292) (@milankl)
Fix typo in docs: julia v1.78 -> v1.8 (#293) (@navidcy)
Bump up julia requirement to v1.8 (#295) (@navidcy)
New stratosphere diffusion defaults (#298) (@milankl)
Progress.txt output with speed and ETA (#301) (@milankl)
Temperature relaxation towards Jablonowski's profile (#302) (@milankl)
new time step scaling following Jablonowski (#303) (@milankl)
ETA and speedstring in progress.txt got lost (#305) (@milankl)
Power spectrum analysis (#307) (@milankl)
HyperDiffusion and VerticalDiffusion (#308) (@milankl)
@unpack + import Paramters removed (#312) (@milankl)
Parameterization fluxes and dry static energy diffusion (#313) (@milankl)
docs minor stuff (#314) (@milankl)
Truncate orography always to smooth T85 (#315) (@milankl)
Keepbits per variable (#316) (@milankl)
Float32, PrimitiveDryCore, OctaGauss new defaults (#317) (@milankl)
Avoid type instability in fluxes_to_tendencies! (#318) (@milankl)
Minor things (#319) (@milankl)
Some docs improvements (#321) (@navidcy)
Update CompatHelper.yml (#322) (@navidcy)
Update TagBot.yml (#324) (@navidcy)
Add compat entry for FLoops (#326) (@navidcy)
spectral_truncation/interpolation type stable (#328) (@milankl)
1st order upwind scheme for vertical advection (#330) (@milankl)
bump to v0.5 (#331) (@milankl)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] about 3 years ago

SpeedyWeather.jl - v0.4.0

SpeedyWeather v0.4.0

Diff since v0.3.0

Closed issues:

Prepare input data (#40)
Float32 vs Float64 performance (#106)
A new grid for SpeedyWeather.jl? (#112)
Shortening the Legendre Transform over m (#131)
Output grids (#134)
Broadcast operations with LowerTriangularMatrix (#135)
Inverse Laplacian (#141)
Longitude offset rotation (#159)
@simd in Legendre Transform? (#162)
copyto! function of LowerTriangularMatrix (#165)

Merged pull requests:

CompatHelper: bump compat for CUDAKernels to 0.4, (keep existing compat) (#119) (@github-actions[bot])
CompatHelper: bump compat for KernelAbstractions to 0.8, (keep existing compat) (#120) (@github-actions[bot])
AbstractGrids towards HEALPix or Octahedral (#122) (@milankl)
Parametrizations with ColumnVariables (#123) (@milankl)
Grid abstractions +indexing, SpecTrans performance (#124) (@milankl)
LowerTriangularMatrix extended (#125) (@milankl)
Grid-flexible spectral transform (#127) (@milankl)
Convection (#128) (@white-alistair)
Adapt functions for diagnostic_variables.jl (#130) (@katharinamaetschke)
Grid indexing (#132) (@milankl)
Update README.md (#133) (@milankl)
Float32 spectral transform (#136) (@milankl)
add OctahedralClenshawGrid + some refactoring of src/grids.jl (#138) (@hottad)
Initialize sigma levels manually (#139) (@maximilian-gelbrecht)
Grid to matrix for output (#140) (@milankl)
Inverse Laplace ∇⁻²! via kernel in ∇²! (#142) (@milankl)
Adapt structures for diagnostic variables and prognostic variables (#143) (@katharinamaetschke)
Interface relaxation with seasonal cycle (#144) (@milankl)
Shallow water model and OctahedralClenshawGrid default (#145) (@milankl)
Add kernelabstractions_adtests CI (#147) (@maximilian-gelbrecht)
Keep GPU branch up to date (#148) (@maximilian-gelbrecht)
FullHEALPixGrid (#150) (@milankl)
Update CI.yml (#152) (@maximilian-gelbrecht)
set_vars! function to easily set variables in PrognosticVariables (#154) (@maximilian-gelbrecht)
fix get_var for pressure (#155) (@maximilian-gelbrecht)
HEALPix4Grid and FullHEALPix4Grid implementation (#156) (@hottad)
Lon offset rotation enabled (#160) (@milankl)
Healpix.jl dep removed (#163) (@milankl)
LowerTriangularMatrix Broadcast fix (#164) (@maximilian-gelbrecht)
Legendre shortcut: truncate loop over m (#166) (@milankl)
No [l,m] access to LTM in gradients (#167) (@milankl)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] over 3 years ago

SpeedyWeather.jl - v0.3.0

SpeedyWeather v0.3.0

Diff since v0.2.1

Closed issues:

Pre-allocate grid-point pressure values and use consistent naming (#91)
Rotating spherical harmonics gif not showing up (#96)
Initial conditions for shallow water (#98)
Float64 run_speedy doesn't output correctly (#102)
Float32 high resolution spectral transform (#104)
LowerTriangularMatrix for spectral coefficients (#111)

Merged pull requests:

make scale_coslat! on output type flexible (#103) (@milankl)
Orography Legendre precomputation in Float64 (#105) (@milankl)
Take exponential of pres_grid for parametrizations (#107) (@white-alistair)
Renaming for consistency, UV_from_vor! added (#108) (@milankl)
Docs: sph harmonics + derivates updated (#109) (@milankl)
LowerTriangularMatrix implemented (#110) (@milankl)
write restart file, restart from it (#113) (@milankl)
CompatHelper: add new compat entry for JLD2 at version 0.4, (keep existing compat) (#114) (@github-actions[bot])
CompatHelper: add new compat entry for CodecZlib at version 0.7, (keep existing compat) (#115) (@github-actions[bot])
fibonacci -> triangle number (#116) (@milankl)
LowerTriangularMatrix in PrognVars, DiagnVars +restructured (#117) (@milankl)
Basics for KernelAbstractions / GPU (#118) (@maximilian-gelbrecht)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] almost 4 years ago

SpeedyWeather.jl - v0.2.1

SpeedyWeather v0.2.1

Diff since v0.2.0

Closed issues:

Get run id fails if 000?.xyz exists (#97)

Merged pull requests:

run???? folder conflict (#99) (@milankl)
div,curl corrected (#100) (@milankl)
bump to v0.2.1 (#101) (@milankl)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] almost 4 years ago

SpeedyWeather.jl - v0.2.0

SpeedyWeather v0.2.0

Diff since v0.1.1

Closed issues:

Spectral gradient leakage? (#63)
Spectral gradient unit test (#75)
Factory Methods for Testing (#84)

Merged pull requests:

vor as unicodeplot, days/day speed shown (#80) (@milankl)
Require Julia v1.7 (#81) (@white-alistair)
Parametrization of Large-Scale Condensation (#82) (@white-alistair)
Introduce ModelSetup distinction (#87) (@milankl)
get u,v from vor and div in ShallowWaterModel (#88) (@milankl)
More documentation (#89) (@milankl)
Define methods for ShallowWaterModel (#92) (@milankl)
CompatHelper: bump compat for UnicodePlots to 3, (keep existing compat) (#93) (@github-actions[bot])
Semi-implicit time stepping (#94) (@milankl)
bump to v0.2 (#95) (@milankl)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] almost 4 years ago

SpeedyWeather.jl - v0.1.1

SpeedyWeather v0.1.1

Diff since v0.1.0

Closed issues:

Available resolutions (#22)

Merged pull requests:

Scale vorticity and gradients with radius (#70) (@milankl)
Pole stability, time step scaling, barotropic testcase (#72) (@milankl)
new teaser pic with T341 (#73) (@milankl)
renaming vorticity advection for consistency (#76) (@milankl)
Various models via dispatch (#78) (@milankl)
bump to v0.1.1 (#79) (@milankl)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] about 4 years ago

SpeedyWeather.jl - v0.1.0

SpeedyWeather v0.1.0

Closed issues:

Consistent definition of model (#42)
Naming "spectral" (#64)

Merged pull requests:

data, dependencies, initial structure (#1) (@milankl)
towards spectral transform (#2) (@milankl)
with appveyor and travis ymls (#3) (@milankl)
towards boundaries, geopotential, parameters, prognostics (#4) (@milankl)
Init (#5) (@milankl)
Init (#6) (@milankl)
Init (#7) (@milankl)
Legendre is approx, sin/cos lat now from the north pole (#8) (@milankl)
Docstrings and renaming (#9) (@milankl)
CI, gitignore, compat updated (#12) (@milankl)
make docs (#13) (@milankl)
copy over from sams version (#14) (@milankl)
initial docs structure (#15) (@milankl)
doc cleanup and developers (#16) (@milankl)
timestep! for 2D and 3D (#17) (@milankl)
Tk/tendencies (#18) (@tomkimpson)
mk/timestepping and horizontal diffusion (#19) (@milankl)
Mk/vertical (#23) (@milankl)
nlat=trunc+1 default resolution (#24) (@milankl)
leapfrog! without mem alloc (#25) (@milankl)
mk/timestepping (#26) (@milankl)
Style and convention in docs (#27) (@milankl)
Naming (#28) (@milankl)
Params renamed to Parameters (#29) (@milankl)
σ_levels, geopot renamed, n_stratosphere_levels introduced (#30) (@milankl)
Spectral transform benchamrk, clip negatives (#34) (@milankl)
Spectral transform with variable resolution (#35) (@milankl)
T31 default, mx=nx=T+1 (#36) (@milankl)
CompatHelper: add new compat entry for AssociatedLegendrePolynomials at version 1, (keep existing compat) (#37) (@github-actions[bot])
New spectral transform (#38) (@milankl)
Update tendencies structure (#39) (@tomkimpson)
Orography from high resolution (2048x1024) file (#41) (@milankl)
CompatHelper: bump compat for BitInformation to 0.4, (keep existing compat) (#43) (@github-actions[bot])
Spectral gradients and Laplacians (#44) (@milankl)
CompatHelper: bump compat for BitInformation to 0.5, (keep existing compat) (#46) (@github-actions[bot])
remove addition of Revise.jl to toml (#49) (@tomkimpson)
Updated get_spectral_tendencies() function (#51) (@tomkimpson)
doc latex with ` (#52) (@milankl)
initialisation test in Float32/64 (#54) (@milankl)
Initialize model to time stepping flow (#55) (@milankl)
Feedback pipeline (#56) (@milankl)
show PrognosticVariables with UnicodePlots (#58) (@milankl)
NetCDF output (#59) (@milankl)
Barotropic vorticity time integration (#60) (@milankl)
Mk/cleanup (#65) (@milankl)
performance: avoid mem alloc for legendre (#66) (@milankl)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] about 4 years ago

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SpeedyWeather.jl - v0.16.0

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SpeedyWeather.jl - v0.7.0

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