Releases | Open Sustainable Technology

SpeedyWeather.jl - v0.15.0

SpeedyWeather v0.15.0

Diff since v0.14.0

Breaking changes

Make KolmogorovFlow forcing default for BarotropicModel #687

Non-breaking changes

RingGrid and LowerTriangularArray longitude rotation #710
ImplicitShallowWater without precomputed arrays #717
CUDA-ised spectral transform #602
Fix isapprox for particles with longitude modulo #714
Fix docustring rendering #712
Updated documentation to include four illustrative figures in the large-scale precipitation and convection sections #702
Added documentation to output surface variables #708
get_gridcell_polygons in RingGrids #706
Revised extended CI tests for differentiability can be launched on comment in PRs #695, #696, #697, #698
Reverse for AbstractGridArrays #691
LandGeometry, LandThermodynamics as component of LandModel, DryLandModel #677
Diagnostic albedo separate for ocean/land #677
Increasing precision for accumulated precipitation output #685
Allow steps to be specified for for run!(simulation, steps=n) #684
Restrict extended CI tests to Julia v1.10 (due to Enzyme) #681
SigmaCoordinates constructors #679
Full timestepping differentiable by Enzyme with Julia 1.10 #656
Type instabilities etc flagged by Reactant #674
Added JLD2 Output to directly output PrognosticVariables and DiagnosticVariables #675
Compat for GPUArrays v11, JLArrays 0.2, KernelAbstractions 0.9 #658
MITgcm's 2-layer land bucket model #672
Fix grid_cell_average! bugs for some grids and resolutions #673
Interfaces for interpolation of AbstractGridArray #671
Test folder sorted into subfolders #671
Land model modularised + land netCDF output #671

Merged pull requests:

Implementation of CUDA-ised transform (#602) (@jackleland)
Differentiability tests for time stepping (#656) (@maximilian-gelbrecht)
bump compat to GPUArrays v11, JLArrays v0.2, KernelAbstractions 0.9 (#658) (@milankl)
Land model modularised (#671) (@milankl)
Grid cell average bug fixes (#673) (@milankl)
Changes for Reactant.jl (#674) (@milankl)
JLD2 Output (#675) (@maximilian-gelbrecht)
Modular land model + diagnostic albedo, independent for ocean/land (#677) (@milankl)
SigmaCoordinates double-defined () constructor (#679) (@milankl)
Extended tests only on 1.10 (#681) (@maximilian-gelbrecht)
run! with steps argument (#684) (@milankl)
Increase output precision for accumulated precip (#685) (@milankl)
Make KolmogorovFlow default for BarotropicModel (#687) (@milankl)
Reverse for AbstractGridArray (#691) (@milankl)
Extended tests on comment and (maybe) all passing (#695) (@maximilian-gelbrecht)
Extended tests launched on comment on PR branch (#696) (@maximilian-gelbrecht)
Revising extended tests (#697) (@maximilian-gelbrecht)
Bump xt0rted/pull-request-comment-branch from 1 to 3 (#698) (@dependabot[bot])
Documentation of convection (#702) (@sunmoumou1)
Move get_faces function from extension to RingGrids (#706) (@milankl)
Documentation: surface variable output (#708) (@maximilian-gelbrecht)
RingGrid and LowerTriangularArray (longitude) rotation (#710) (@milankl)
Fix docstring rendering (#712) (@navidcy)
Add mod(lon, 360) for isapprox particles (#714) (@milankl)
Shallow water implicit without precomputed arrays (#717) (@milankl)
bump to v0.15 (#718) (@milankl)

Closed issues:

Simplified spectral transform towards GPU version (#575)
Particle modulo bug (#655)
Grainy convection/precipitation in long simulations (#683)
NoVegetation broken (#688)
Error when adding surface pressure vector as netCDF output variable to model (#707)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] 5 days ago

SpeedyWeather.jl - v0.14.0

SpeedyWeather v0.14.0

Diff since v0.13.0

Breaking changes

Precipitation is not outputted anymore by default, use add!(model, SpeedyWeather.PrecipitationOutput()...) now
Coordinates defined in degrees lond, latd, not colat, lon https://github.com/SpeedyWeather/SpeedyWeather.jl/pull/647

Merged pull requests:

Add tracer advection (#579) (@milankl)
Change timestep to 40min at T31 (#623) (@milankl)
NBandRadiation scheme for longwave outgoing (#633) (@milankl)
Number format flexibility with set! (#634) (@rocroc2017)
Forcing/drag for primitive models too (#635) (@milankl)
Roll back GPUArrays upgrade (#636) (@maximilian-gelbrecht)
RingGrinds more general indexing with Colon (less escapes) (#637) (@maximilian-gelbrecht)
Spectral Gradients Gradients (#638) (@maximilian-gelbrecht)
ConvectiveHeating implemented (#639) (@milankl)
GPU CI Pipeline (#645) (@maximilian-gelbrecht)
Dummy Buildkite Pipeline (#646) (@maximilian-gelbrecht)
Grid coordinates defined in degrees not colatitudes and radians (#647) (@milankl)
Clamp in ZonalWind to [0, 1] for sqrt (#649) (@milankl)
set! for time step (#650) (@milankl)
CI Extended Tests on 1.10 as well (#651) (@maximilian-gelbrecht)
Group initialize!, timestep!, finalize! of main time loop (#652) (@milankl)
New output variables definition simplified (#653) (@milankl)
bug: south pole at -90 for vertices (#654) (@milankl)
NetCDF output for tracers, precipitation rates at initialize! again (#657) (@milankl)
First timesteps in main loop (#659) (@milankl)
CompatHelper: bump compat for Makie in [weakdeps] to 0.22, (keep existing compat) (#663) (@github-actions[bot])
Prescribed surface heat and evaporative fluxes (#664) (@milankl)
AbstractVectors in interpolation.jl (#665) (@milankl)
Initialize simulation restructured (#666) (@milankl)
Surface fluxes modular on ocean and land (#667) (@milankl)
[LowerTriangularMatrices] Sum for LTA (#668) (@maximilian-gelbrecht)
Precipitation rate for coupling (#669) (@milankl)
Bump to v0.14 (#670) (@milankl)

Closed issues:

Design choices towards stochastic parameterizations (#199)
Modified dynamics (#507)
arbitrary tracer support (#564)
Implement Heating as model component (#567)
Profiling of timestep (#594)
Differentiability of Spatial Gradients (#598)
How to use SpeedyWeather to diagnose model run instability caused by initial conditions. (#643)
Issue with Model Execution When trunc is Greater Than or Equal to 600 (#644)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] 3 months ago

SpeedyWeather.jl - v0.13.0

SpeedyWeather v0.13.0

Diff since v0.12.1

Merged pull requests:

SpeedyTransforms: Differentiable transforms via custom Enzyme rule (#589) (@maximilian-gelbrecht)
CompatHelper: bump compat for GPUArrays to 11 and JLArrays to 0.2, (keep existing compat) (#590) (@github-actions[bot])
Rossby-Haurwitz wave initial conditions for eta (#604) (@rivwgk)
Optical depth parameterization + array-agnostic ColumnVariables (#606) (@milankl)
large-scale condensation at <100% (#609) (@minqi6)
Slab ocean and net surface and top-of-atmosphere fluxes (#613) (@milankl)
Include large-scale condensation tests (#615) (@milankl)
Power spectrum for n-dimensional LowerTriangularArray (#618) (@milankl)
CompatHelper: add new compat entry for FiniteDifferences in [weakdeps] at version 0.12, (keep existing compat) (#620) (@github-actions[bot])
CompatHelper: add new compat entry for Enzyme in [weakdeps] at version 0.13, (keep existing compat) (#622) (@github-actions[bot])
One band longwave radiation implemented (#624) (@milankl)
[SpeedyTransforms] Restrict finite difference tests to one grid only (#625) (@maximilian-gelbrecht)
[SpeedyTransforms] Exclude second differentiation identity test for OctahedralGrid (#627) (@maximilian-gelbrecht)
Introduce separate extended tests in CI (#628) (@maximilian-gelbrecht)
AbstractStochasticPhysics and SPPT (#629) (@milankl)
AbstractSurfacePerturbation (#631) (@milankl)
bump to v0.13 (#632) (@milankl)

Closed issues:

Driven by reanalysis data (#576)
Stability Issues with Multiple Weather Trajectories Generation (#607)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] 5 months ago

SpeedyWeather.jl - v0.12.1

SpeedyWeather v0.12.1

Diff since v0.12.0

Merged pull requests:

GeoMakie extension and interactive 3D grid visualisation on the sphere (#600) (@milankl)
Array-agnostic horizontal diffusion, +modularised (#601) (@milankl)
Define zonal_mean for any AbstractGridArray (#603) (@milankl)
Update README.md with dataviz (#608) (@milankl)
set! for boundary conditions (#611) (@milankl)
ConstantLandTemperature implemented (#612) (@milankl)

Closed issues:

Spectral filtering instead of hyperdiffusion (#547)
Interactive 3D data visualisation directly on the grid (#599)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] 5 months ago

SpeedyWeather.jl - v0.12.0

SpeedyWeather v0.12.0

Diff since v0.11.0

Merged pull requests:

Feedback.verbose coupled to isinteractive() (#582) (@milankl)
Array-agnostic SpectralTransform (#583) (@milankl)
Stop supporting Julia 1.9 (#585) (@milankl)
Move CUDA to extension (#586) (@milankl)
Do not interweave transform (#587) (@milankl)
Add Haversine and general spherical_distance and AbstractSphericalDistance functionality (#588) (@treigerm)
Rossby-Haurwitz wave initial conditions +docs (#591) (@milankl)
SpectralAR1Process and AbstractRandomProcess (#592) (@milankl)
Model constructors with positional SpectralGrid argument (#593) (@milankl)
Introduce OctaminimalGaussianArray; smaller, faster but less accurate (#595) (@milankl)
NetCDF output: Precipitation accumulated and rate (#596) (@milankl)
Bump to v0.12 (#597) (@milankl)

Closed issues:

Performance of the spectral transform (#32)
Set! discontinuous across prime meridian (#584)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] 6 months ago

SpeedyWeather.jl - v0.11.0

SpeedyWeather v0.11.0

Diff since v0.10.0

Merged pull requests:

Restructured dynamical core, variables array-agnostic and 3-dimensional, modular netCDF output (#525) (@milankl)
Change LowerTriangularArrays to be subtype of AbstractArray{T,N-1} (#543) (@maximilian-gelbrecht)
JOSS paper citation (#548) (@navidcy)
Bump actions/upload-artifact from 1 to 4 (#550) (@dependabot[bot])
Bump actions/checkout from 3 to 4 (#551) (@dependabot[bot])
Bump stefanzweifel/git-auto-commit-action from 4 to 5 (#552) (@dependabot[bot])
All parameterizations at prev timestep, flux limiters removed (#555) (@milankl)
Create CHANGELOG.md (#559) (@milankl)
LTA: copyto! for Vectors (#561) (@maximilian-gelbrecht)
LTA: colon indexing for LTM (#562) (@maximilian-gelbrecht)
Set! function for PrognosticVariables and ICs for new structure (#563) (@maximilian-gelbrecht)
New 4D Variable Structure: nlayers instead of nlev; starting to adjust docs (#566) (@maximilian-gelbrecht)
Fix RingGrid broadcast issue with mismatching dimensions (#568) (@maximilian-gelbrecht)
RingGrids: Fix RingGrids Array conversion (#572) (@maximilian-gelbrecht)
NetCDF output modularised (#573) (@milankl)
CompatHelper: bump compat for JLD2 to 0.5, (keep existing compat) (#574) (@github-actions[bot])
Benchmarks for individual dynamics functions (#577) (@maximilian-gelbrecht)
set! for orography (#578) (@milankl)
Set! documentation / keywords (#580) (@maximilian-gelbrecht)

Closed issues:

Example GPU kernels (#121)
Modularise netCDF output (#522)
Instability develops over long integrations (#553)
RingGrids: Conflicting Broadcast Rules (#565)
RingGrids: N-dim Matrix/Array constructors (#570)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] 7 months ago

SpeedyWeather.jl - v0.10.0

SpeedyWeather v0.10.0

Diff since v0.9.0

Merged pull requests:

JOSS paper (#387) (@milankl)
Scheduler for callbacks (#488) (@milankl)
Zenodo DOI added (#489) (@milankl)
Schedule bug with millisecond time steps (#490) (@milankl)
Update README.md with particle advection video (#491) (@milankl)
Field trees (#492) (@milankl)
Export coriolis, unscale diagnostics at finish, add! callbacks directly to model too (#494) (@milankl)
Trees with summarysize (#495) (@milankl)
ConstantOceanClimatology, AquaPlanet (#496) (@milankl)
Document typical online analysis steps (#497) (@milankl)
Convection with work arrays for thread safety (#498) (@milankl)
Bulk Richardson-based vertical diffusion (#499) (@milankl)
LowerTriangularMatrix copyto! range bug (#501) (@milankl)
Jeevanjee longwave radiation (#502) (@milankl)
LowerTriangularMatrices: N-dimensional and GPU ready (#503) (@maximilian-gelbrecht)
Add to analysis doc (from new branch) (#505) (@milankl)
Broadcasting for RingGrids (#506) (@milankl)
Benchmark overview (#509) (@milankl)
Large-scale condensation documented (#510) (@milankl)
Add Makie extension (#511) (@milankl)
Convection documentation (#512) (@milankl)
Radiation documentation (#513) (@milankl)
Held-Suarez example, NoTypes for surface fluxes (#514) (@milankl)
Bump julia-actions/setup-julia from 1 to 2 (#516) (@dependabot[bot])
Remove PythonPlot dependency of docs (#517) (@milankl)
Model construction without type constraints (#519) (@milankl)
AbstractGridArray N-dimensional and GPU ready (#520) (@milankl)
Exports more gradient operators from SpeedyTransforms (#523) (@milankl)
Change weight in ZonalJet() (#524) (@miniufo)
Orography documented (#526) (@milankl)
Particle advection time stepping corrected (#528) (@milankl)
Humidity video for readme (#529) (@milankl)
Surface flux documentation (#530) (@milankl)
Add explicit arithmetics again to LowerTriangularArrays (#531) (@maximilian-gelbrecht)
Vertical diffusion documentation (#532) (@milankl)
Ocean model documentation (#533) (@milankl)
Parameterization structure documented (#534) (@milankl)
Bump Makie compat (#535) (@asinghvi17)
Docs clarification: Parameterization for primitive models only (#536) (@milankl)
Restructure docs following #443 (#537) (@milankl)
Scale orography and smooth fraction of resolved wavenumbers (#538) (@milankl)
StochasticStirring example with CairoMakie (#539) (@milankl)
Horizontal diffusion not adaptive (#540) (@milankl)
Large-scale condensation at previous time step (#541) (@milankl)
Surface fluxes calculated from previous time step (#542) (@milankl)
bump to v0.10 (#545) (@milankl)

Closed issues:

Physical parameterizations: inconsistencies between speedy.f90 and the Speedy Documentation (#126)
Progress towards primitive equations (#192)
Divergence of (hu, hv, h) (#372)
Initial conditions from PDEArena (#377)
Conserved quantity verifying (#400)
shallow-water case for a global ocean (#412)
[JOSS review] Nat's Review of SpeedyWeather.jl (#443)
[JOSS Review] questions + suggestions (#446)
[JOSS review] Zenodo archival (#448)
Another simple radiation scheme (#456)
Automatic performance testing (#464)
JOSS review: text comments (#480)
Replace PythonPlot with a Julia-based plotting library in Docs (#482)
Verifying conserved quantities (#500)
PrimitiveDry and WetModel generation on Julia v1.9 hangs (#508)
The PrimitiveWetModel example fails (#515)
unbalanced initial condition for Galewsky Jet (#518)
Time stepping of particle tracking (#527)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] 11 months ago

SpeedyWeather.jl - v0.9.0

SpeedyWeather v0.9.0

Diff since v0.8.0

Merged pull requests:

Solar zenith angle calculation (#438) (@milankl)
ImmediateCondensation and Clausius-Clapeyron (#439) (@milankl)
Flux limiters for surface drag and heat fluxes (#440) (@milankl)
Bulk Richardson number-based boundary layer drag (#441) (@milankl)
Simplified BettsMiller convection (#442) (@milankl)
Simple radiation schemes: UniformCooling, TransparentShortwave (#444) (@milankl)
ImplicitCondensation not immediate anymore (#447) (@milankl)
AquaPlanetMask (#450) (@milankl)
Use Documenter.@docs functionality to display docstring in Documentation (#451) (@navidcy)
Run LowerTriangularMatrix and output examples while building the docs (#453) (@navidcy)
Some more examples running live in the Docs (#454) (@navidcy)
Callbacks (#455) (@milankl)
Restructuring the docs (#457) (@milankl)
Collapse levels to streamline the documentation navigation (#458) (@natgeo-wong)
Parametric models, non-parametric abstract types, remove DynamicsConstants, Dict of callbacks (#459) (@milankl)
Particle advection in 2D, all models (#465) (@milankl)
Dry Betts-Miller convection (#467) (@milankl)
Add dependabot (#468) (@milankl)
Initial conditions modular for variables (#469) (@milankl)
Remove DEFAULT_NF generators of Earth and EarthAtmosphere (#470) (@milankl)
Bump actions/cache from 3 to 4 (#471) (@dependabot[bot])
Bump actions/checkout from 3 to 4 (#472) (@dependabot[bot])
Add space after comma (#473) (@navidcy)
Change arg name for isincreasing/isdecreasing to agree w docstring (#474) (@navidcy)
Fix the Docs/SpeedyTransforms/Geostrophy example + make it run live by doc built (#475) (@navidcy)
Remove testing for 1.8 and 1.9 temporarily (#476) (@milankl)
Add space after semicolon (#477) (@navidcy)
Delete deprecated doc instructions (#479) (@navidcy)
Add @ids for model pages + add links to models pages in Docs landing page (#481) (@navidcy)
ParticleTracker with netCDF (#484) (@milankl)
rand(Particle) cos-distribution corrected (#485) (@milankl)
Update README.md (#486) (@milankl)
Bump to v0.9 (#487) (@milankl)

Closed issues:

online particle tracking (#413)
Convection too weak?! (#436)
Condensation fireworks (#445)
[JOSS Review] firstnames vs. initials in .bib file (#449)
Question about example in Docs/SpeedyTransforms/Geostrophy (#452)
Precompilation Error (#466)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] about 1 year ago

SpeedyWeather.jl - v0.8.0

SpeedyWeather v0.8.0

Diff since v0.7.1

Merged pull requests:

Make prognostics available for forcing, drag in Barotropic/SWM (#423) (@milankl)
Stochastic stirring video (#424) (@milankl)
Add random wave video (#425) (@milankl)
Export forcing!, drag!, etc for extending those with fewer conflicts (#426) (@milankl)
CompatHelper: bump compat for Adapt to 4, (keep existing compat) (#427) (@milankl)
Use Julia v1.10 for CI and building Docs (#428) (@navidcy)
Add compat entry for NCDatasets v0.14 (#429) (@navidcy)
Adjust time step with radius (#430) (@milankl)
Add remark about Julia compat (#431) (@navidcy)
Switch off dynamics (#432) (@milankl)
Vertical diffusion of humidity (#433) (@milankl)
NoBoundaryLayer but TemperatureRelaxation default for dry & wet models (#435) (@milankl)
bump to v0.8 (#437) (@milankl)

Closed issues:

Literated example with the animation that is currently in README? (#297)
Global shallow-water run (#323)
Hybrid vertical coordinates (#329)
What constitutes the 'state' of the model at a particular timestep (#347)
SpeedyWeather's logic and information flow (#350)
Zanna & Bolton eddy parameterization (#402)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] over 1 year ago

SpeedyWeather.jl - v0.7.1

SpeedyWeather v0.7.1

Diff since v0.7.0

Merged pull requests:

Period Keyword Argument instead of n_days (#420) (@maximilian-gelbrecht)
JOSS badge added (#421) (@milankl)
bump to v0.7.1 (#422) (@milankl)

Closed issues:

Given user-facing parameters that represent a time period actually units (#417)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] over 1 year ago

SpeedyWeather.jl - v0.7.0

SpeedyWeather v0.7.0

Diff since v0.6.0

Merged pull requests:

Forcing and drag for the ShallowWaterModel (#376) (@milankl)
eta/pres was not output (#378) (@milankl)
RandomWaves initial conditions (#379) (@milankl)
scale_coslat funcs without Geometry, moved to RingGrids (#381) (@milankl)
Set lmax+1 row to zero in divergence!, curl! (#383) (@milankl)
Output via NCDatasets.jl, remove NetCDF.jl deps (#384) (@milankl)
Pretty printing for structs (#385) (@milankl)
Model setups documented (#386) (@milankl)
Land-sea mask (#389) (@milankl)
Bug: First NetCDF time step is always 2000-01-01 (#390) (@milankl)
Coriolis and div,curl,laplace convience functions (#392) (@milankl)
Accumulate vor/div tendencies (#393) (@milankl)
Ocean/Land for prognostic variables added (#395) (@milankl)
CompatHelper: bump compat for CUDA to 5, (keep existing compat) (#396) (@milankl)
Documentation: Extending SpeedyWeather.jl (#397) (@milankl)
CompatHelper: bump compat for FastGaussQuadrature to 1, (keep existin… (#398) (@milankl)
Surface fluxes of heat, moisture and momentum: Land and ocean seasonal climatology (#399) (@milankl)
CompatHelper: bump compat for NCDatasets to 0.13, (keep existing compat) (#401) (@milankl)
Soil moisture and vegetation (#403) (@milankl)
Overhauled initial conditions for humidity (#404) (@milankl)
Output cloud top [Pa], condensation simplified (#405) (@milankl)
NetCDF output with BFloat16 (#407) (@milankl)
plot(::LowerTriangularMatrix) (#408) (@milankl)
Simplify default vertical coordinate spacing to equi-distant with sigma (#409) (@milankl)
Convection (#414) (@milankl)
Fix load_trajectory (#415) (@maximilian-gelbrecht)
Output_dt in leapfrog time stepping and some adjustments for using Dates (#418) (@maximilian-gelbrecht)
Bump to v0.7 (#419) (@milankl)

Closed issues:

References for the dynamical core (#45)
Use logging infrastructure for feedback messages (#68)
Number format-flexibility (#137)
Forcing and climatology in the shallow water system (#151)
Liniting (#220)
16 bit model (#375)
divergence! should set last row to zero (#382)
plotting error with Float32sr spectralgrid! (#388)
Shallow water run (#391)
Barotropic vorticity model: Stochastic stirring (#394)
run BarotropicModel T21 with BFloat16 and output (#406)
low precision stochastic rounding (#411)
Output time axis: option to adhere to output_dt exactly (#416)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] over 1 year ago

SpeedyWeather.jl - v0.6.0

SpeedyWeather v0.6.0

Diff since v0.5.0

Closed issues:

16-bit FFT (#31)
Expanding the Documentation (#263)
Cannot run example on non-GPU system (#282)
Windows permssions problem (#285)
Precompilation warnings? (#296)
Away from monolithic run_speedy()? (#320)
CI runs on latest Julia release -- should we add more? (#325)
Query about computational resources (#342)
CI test on supported Julia versions? (#359)
Precompilation errors of IrrationalConstants dependency (#366)
SpectralGrid not defined in v0.5 (#367)

Merged pull requests:

New SpectralGrid, Model, initialize!, simulation, run! structure (#327) (@milankl)
Add clarification for SWE variables (#332) (@navidcy)
Update README.md (#333) (@milankl)
RingGrids and LowerTriangularMatrices docs (#335) (@milankl)
remove Model from SpectralGrid (#336) (@milankl)
Update README.md (#337) (@milankl)
SpeedyCondensation implemented (#338) (@milankl)
Update README.md (#339) (@milankl)
NetCDF output documented (#340) (@milankl)
Barotropic vorticity equation algorithm described (#341) (@milankl)
barotropic, shallowwater test cases (#343) (@milankl)
absolute paths docs img (#344) (@milankl)
Run examples and produce output with every Docs built (#345) (@navidcy)
Plot ::AbstractGrid as Unicode heatmap (#346) (@milankl)
Barotropic, shallow water, and some primitive model documentation (#348) (@milankl)
Update README.md with logo (#349) (@milankl)
Fix typos in docs (#351) (@pitmonticone)
Fix typos in mk/docs (#352) (@pitmonticone)
Move clock to prognostic variables (#353) (@milankl)
plot small grids without spaces (#354) (@milankl)
Non-adaptive implicit: temp_profile in implicit only (#355) (@milankl)
SpectralTransform for square LowerTriMats too (#356) (@milankl)
CompatHelper: bump compat for KernelAbstractions to 0.9, (keep existi… (#357) (@milankl)
Support KernelAbstractions 0.9 (#358) (@vchuravy)
Other video for primitive (#360) (@milankl)
CI tests on Julia 1.8, 1.9 + test on Julia nightly every week (#361) (@milankl)
Different vertical advection schemes (#362) (@simone-silvestri)
SpeedyTransforms documentation (#363) (@milankl)
Increase test tolerance (#364) (@milankl)
Primitive equation documentation (#365) (@milankl)
Bugfix in vertical advection (#368) (@simone-silvestri)
Speedstring precompilation warning (#369) (@milankl)
Full and octahedral Gaussian grid documented (#371) (@milankl)
get_truncation(::AbstractGrid) (#373) (@milankl)
bump to v0.6 (#374) (@milankl)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] over 1 year ago

SpeedyWeather.jl - v0.5.0

SpeedyWeather v0.5.0

Diff since v0.4.0

Closed issues:

Parallelism in the vertical (#20)
Pretty printing (#57)
Horizontal domain decomposition for parametrizations (#83)
Overhaul approach to physical constants and model parameters (#86)
Consistency between NetCDF output grid and internal grid? (#146)
OctahedralGaussianGrid not defined (#168)
Variable initialisation (#170)
Inconsistency of pressure variable in convection parametrizations (#171)
Use PsychroLib for psychrometric calculations (#172)
Precision of Time Output in NetCDF Files (#180)
Move to SpeedyWeather orga (#182)
Move parameterisations into folder (#183)
Discuss general API (#184)
Solution struct / return the Output struct (#185)
Pre-compilation warnings (#194)
Gradients in spectral space ref in Docs/Dynamical Core is broken (#203)
Merging strategy (#214)
Abstraction, type-hierarchy and modularity (#222)
Not more than 70 vertical levels (#228)
Outsourcing packages (#231)
Incompatible with Julia 1.7? (#232)
Unable to open output files using NCDatasets.jl (#236)
First output timestep is < 6 hours. (#237)
semi-implicit corrections (#252)
Linearize virtual temperature for geopotential? (dynamics only) (#254)
Renaming in Prognostic/DiagnosticVariables (#255)
Crazy temperatures: Vertical advection bug? (#257)
Output time precision (again) (#266)
Vertical advection instability? (#271)
Not thread-safe / bit reproducible ?! (#272)
Missing (-1)^{n+1} factor from hyperdiffusion term (#286)
Greenland whole column instability at T255 (#289)
Broken precompilation on Linux? (#294)
Temperature profiles, forcing vs implicit (#299)
Power spectrum (#304)
Diffusion scaling (#306)
Vertical diffusion (#309)
Topography smoothing (#310)
Static energy diffusion (#311)

Merged pull requests:

Add shortwave radiation parametrization (#169) (@dmey)
Adapt functions (#173) (@katharinamaetschke)
CompatHelper: bump compat for FastGaussQuadrature to 0.5, (keep existing compat) (#174) (@github-actions[bot])
run_speedy!(progn,diagn,model) (#175) (@milankl)
Use BarotropicModel instead of :barotropic etc (#176) (@milankl)
Add longwave radiation parametrization (#177) (@dmey)
Update copyright and licensing information (#179) (@dmey)
allocate arrays filled with nans (#181) (@milankl)
Output Time Int64 and Custom Run_Id (#186) (@maximilian-gelbrecht)
Adapt functions DefineDiffusion, DefineImplicit and Geometry (#187) (@katharinamaetschke)
Geopotential calculation (#188) (@milankl)
Surface pressure tendency (#189) (@milankl)
Vertical velocity dsigma/dt (#191) (@milankl)
Keep GPU branch up-to-date with Main (#193) (@maximilian-gelbrecht)
add_tendencies! updated to LowerTriangularMatrix (#195) (@milankl)
Bernoulli potential for PrimitiveEquation (#196) (@milankl)
Virtual temperature calculation (#197) (@milankl)
Vertical advection of u,v + tendencies (vor, pres grads) (#198) (@milankl)
Fix link to doc in README.md (#200) (@dmey)
Fix typo (#202) (@navidcy)
-Dbar in spectral; a,b work arrays; humidity advection; vorticity_flux_divcurl! with flags (#204) (@milankl)
Temperature equation and primitive equation time stepping (#205) (@milankl)
temp, pres initial conditions at rest (#206) (@milankl)
mountain on/off/scale as parameter (#207) (@milankl)
test ∇×∇=0 and ∇⋅∇=∇² (#208) (@milankl)
horizontal_diffusion! generalised to ::ModelSetup (#209) (@milankl)
Reformulated temperature equation (#210) (@milankl)
Overhauled vertical advection (#211) (@milankl)
Interpolation: AbstractGrid -> arbitrary grid (#212) (@milankl)
In-place and more efficient eachring computation (#213) (@milankl)
add colorbar to unicodeplots (#215) (@milankl)
typo in vertical advection (#216) (@milankl)
Parameters{Model<:ModelSetup} and orography abstracted (#217) (@milankl)
Add mini development notes (#221) (@dmey)
ZonalRidge orography added, Geometry with lond,latd (#223) (@milankl)
u,v_grid instead of U,V_grid; /coslat in spectrans (#224) (@milankl)
interpolate, interpolate! between grids (#225) (@milankl)
NetCDF output with interpolator (#226) (@milankl)
Obtain n_stratosphere_levels from default parameter sigma_tropopause (#227) (@milankl)
add convenience interpolate method, show ring info for grids (#229) (@milankl)
InitialConditions abstracted (#230) (@milankl)
Scaling centralised, output on adjustable grid sizes (#233) (@milankl)
Rename to OctaHEALPixGrid (#234) (@milankl)
started grid documentation (#235) (@milankl)
Adapt docs to SpeedyWeather orga (#238) (@milankl)
Galewsky 2004 initial conditions for shallow water (#239) (@milankl)
update @ref in docs (#240) (@milankl)
restructure into folders and submodules (#241) (@milankl)
grids comparison.png link corrected (#243) (@milankl)
Update README.md (#244) (@milankl)
New normalization for automatic sigma levels (#245) (@milankl)
remove callside @inline as this requires 1.8 (#246) (@milankl)
Galewsky init conditions modifiable in default params (#247) (@milankl)
CompatHelper: bump compat for CUDA to 4, (keep existing compat) (#248) (@milankl)
Jablonowski and Williamson initial conditions (#249) (@milankl)
JW06 pressure constant (#250) (@milankl)
Semi-implicit corrections for primitive equations (#251) (@milankl)
Update README.md (#253) (@milankl)
Primitive equation dry core bughunt (#256) (@milankl)
Utility function load_trajectory added (#258) (@maximilian-gelbrecht)
Use Temporary Files for Test Output (#261) (@white-alistair)
copy! for PrognosticVariables (#262) (@maximilian-gelbrecht)
Multi-threading added (#264) (@milankl)
Boundary layer scheme from Held and Suarez (#269) (@milankl)
Held Suarez temperature forcing (#270) (@milankl)
Update README.md (#273) (@milankl)
Make default RNG seed deterministic (#274) (@white-alistair)
Reduce memory: no U,V,bernoulli in DiagnVariables (#275) (@milankl)
Shorten implicit geopotential k:nlev (#276) (@milankl)
Planet abstracted, Earth <: Planet (#277) (@milankl)
Hyper diffusion overhauled (#278) (@milankl)
primitive equation video in readme (#279) (@milankl)
TemperatureRelaxation, BoundaryLayer type stable (#280) (@milankl)
Merge main into mk/parameterizations (#281) (@milankl)
Missing (-1)^{n+1} factor from hyperdiffusion term (#283) (@navidcy)
Add spaces after commas (#284) (@navidcy)
restructure PrognosticVariables (#287) (@milankl)
Docs for Parameters (#288) (@navidcy)
Dealiasing parameter for quad,cub truncation (#290) (@milankl)
Better docs rendering (#291) (@navidcy)
Diffusion tapering for stratosphere (#292) (@milankl)
Fix typo in docs: julia v1.78 -> v1.8 (#293) (@navidcy)
Bump up julia requirement to v1.8 (#295) (@navidcy)
New stratosphere diffusion defaults (#298) (@milankl)
Progress.txt output with speed and ETA (#301) (@milankl)
Temperature relaxation towards Jablonowski's profile (#302) (@milankl)
new time step scaling following Jablonowski (#303) (@milankl)
ETA and speedstring in progress.txt got lost (#305) (@milankl)
Power spectrum analysis (#307) (@milankl)
HyperDiffusion and VerticalDiffusion (#308) (@milankl)
@unpack + import Paramters removed (#312) (@milankl)
Parameterization fluxes and dry static energy diffusion (#313) (@milankl)
docs minor stuff (#314) (@milankl)
Truncate orography always to smooth T85 (#315) (@milankl)
Keepbits per variable (#316) (@milankl)
Float32, PrimitiveDryCore, OctaGauss new defaults (#317) (@milankl)
Avoid type instability in fluxes_to_tendencies! (#318) (@milankl)
Minor things (#319) (@milankl)
Some docs improvements (#321) (@navidcy)
Update CompatHelper.yml (#322) (@navidcy)
Update TagBot.yml (#324) (@navidcy)
Add compat entry for FLoops (#326) (@navidcy)
spectral_truncation/interpolation type stable (#328) (@milankl)
1st order upwind scheme for vertical advection (#330) (@milankl)
bump to v0.5 (#331) (@milankl)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] almost 2 years ago

SpeedyWeather.jl - v0.4.0

SpeedyWeather v0.4.0

Diff since v0.3.0

Closed issues:

Prepare input data (#40)
Float32 vs Float64 performance (#106)
A new grid for SpeedyWeather.jl? (#112)
Shortening the Legendre Transform over m (#131)
Output grids (#134)
Broadcast operations with LowerTriangularMatrix (#135)
Inverse Laplacian (#141)
Longitude offset rotation (#159)
@simd in Legendre Transform? (#162)
copyto! function of LowerTriangularMatrix (#165)

Merged pull requests:

CompatHelper: bump compat for CUDAKernels to 0.4, (keep existing compat) (#119) (@github-actions[bot])
CompatHelper: bump compat for KernelAbstractions to 0.8, (keep existing compat) (#120) (@github-actions[bot])
AbstractGrids towards HEALPix or Octahedral (#122) (@milankl)
Parametrizations with ColumnVariables (#123) (@milankl)
Grid abstractions +indexing, SpecTrans performance (#124) (@milankl)
LowerTriangularMatrix extended (#125) (@milankl)
Grid-flexible spectral transform (#127) (@milankl)
Convection (#128) (@white-alistair)
Adapt functions for diagnostic_variables.jl (#130) (@katharinamaetschke)
Grid indexing (#132) (@milankl)
Update README.md (#133) (@milankl)
Float32 spectral transform (#136) (@milankl)
add OctahedralClenshawGrid + some refactoring of src/grids.jl (#138) (@hottad)
Initialize sigma levels manually (#139) (@maximilian-gelbrecht)
Grid to matrix for output (#140) (@milankl)
Inverse Laplace ∇⁻²! via kernel in ∇²! (#142) (@milankl)
Adapt structures for diagnostic variables and prognostic variables (#143) (@katharinamaetschke)
Interface relaxation with seasonal cycle (#144) (@milankl)
Shallow water model and OctahedralClenshawGrid default (#145) (@milankl)
Add kernelabstractions_adtests CI (#147) (@maximilian-gelbrecht)
Keep GPU branch up to date (#148) (@maximilian-gelbrecht)
FullHEALPixGrid (#150) (@milankl)
Update CI.yml (#152) (@maximilian-gelbrecht)
set_vars! function to easily set variables in PrognosticVariables (#154) (@maximilian-gelbrecht)
fix get_var for pressure (#155) (@maximilian-gelbrecht)
HEALPix4Grid and FullHEALPix4Grid implementation (#156) (@hottad)
Lon offset rotation enabled (#160) (@milankl)
Healpix.jl dep removed (#163) (@milankl)
LowerTriangularMatrix Broadcast fix (#164) (@maximilian-gelbrecht)
Legendre shortcut: truncate loop over m (#166) (@milankl)
No [l,m] access to LTM in gradients (#167) (@milankl)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] over 2 years ago

SpeedyWeather.jl - v0.3.0

SpeedyWeather v0.3.0

Diff since v0.2.1

Closed issues:

Pre-allocate grid-point pressure values and use consistent naming (#91)
Rotating spherical harmonics gif not showing up (#96)
Initial conditions for shallow water (#98)
Float64 run_speedy doesn't output correctly (#102)
Float32 high resolution spectral transform (#104)
LowerTriangularMatrix for spectral coefficients (#111)

Merged pull requests:

make scale_coslat! on output type flexible (#103) (@milankl)
Orography Legendre precomputation in Float64 (#105) (@milankl)
Take exponential of pres_grid for parametrizations (#107) (@white-alistair)
Renaming for consistency, UV_from_vor! added (#108) (@milankl)
Docs: sph harmonics + derivates updated (#109) (@milankl)
LowerTriangularMatrix implemented (#110) (@milankl)
write restart file, restart from it (#113) (@milankl)
CompatHelper: add new compat entry for JLD2 at version 0.4, (keep existing compat) (#114) (@github-actions[bot])
CompatHelper: add new compat entry for CodecZlib at version 0.7, (keep existing compat) (#115) (@github-actions[bot])
fibonacci -> triangle number (#116) (@milankl)
LowerTriangularMatrix in PrognVars, DiagnVars +restructured (#117) (@milankl)
Basics for KernelAbstractions / GPU (#118) (@maximilian-gelbrecht)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] over 2 years ago

SpeedyWeather.jl - v0.2.1

SpeedyWeather v0.2.1

Diff since v0.2.0

Closed issues:

Get run id fails if 000?.xyz exists (#97)

Merged pull requests:

run???? folder conflict (#99) (@milankl)
div,curl corrected (#100) (@milankl)
bump to v0.2.1 (#101) (@milankl)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] almost 3 years ago

SpeedyWeather.jl - v0.2.0

SpeedyWeather v0.2.0

Diff since v0.1.1

Closed issues:

Spectral gradient leakage? (#63)
Spectral gradient unit test (#75)
Factory Methods for Testing (#84)

Merged pull requests:

vor as unicodeplot, days/day speed shown (#80) (@milankl)
Require Julia v1.7 (#81) (@white-alistair)
Parametrization of Large-Scale Condensation (#82) (@white-alistair)
Introduce ModelSetup distinction (#87) (@milankl)
get u,v from vor and div in ShallowWaterModel (#88) (@milankl)
More documentation (#89) (@milankl)
Define methods for ShallowWaterModel (#92) (@milankl)
CompatHelper: bump compat for UnicodePlots to 3, (keep existing compat) (#93) (@github-actions[bot])
Semi-implicit time stepping (#94) (@milankl)
bump to v0.2 (#95) (@milankl)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] almost 3 years ago

SpeedyWeather.jl - v0.1.1

SpeedyWeather v0.1.1

Diff since v0.1.0

Closed issues:

Available resolutions (#22)

Merged pull requests:

Scale vorticity and gradients with radius (#70) (@milankl)
Pole stability, time step scaling, barotropic testcase (#72) (@milankl)
new teaser pic with T341 (#73) (@milankl)
renaming vorticity advection for consistency (#76) (@milankl)
Various models via dispatch (#78) (@milankl)
bump to v0.1.1 (#79) (@milankl)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] almost 3 years ago

SpeedyWeather.jl - v0.1.0

SpeedyWeather v0.1.0

Closed issues:

Consistent definition of model (#42)
Naming "spectral" (#64)

Merged pull requests:

data, dependencies, initial structure (#1) (@milankl)
towards spectral transform (#2) (@milankl)
with appveyor and travis ymls (#3) (@milankl)
towards boundaries, geopotential, parameters, prognostics (#4) (@milankl)
Init (#5) (@milankl)
Init (#6) (@milankl)
Init (#7) (@milankl)
Legendre is approx, sin/cos lat now from the north pole (#8) (@milankl)
Docstrings and renaming (#9) (@milankl)
CI, gitignore, compat updated (#12) (@milankl)
make docs (#13) (@milankl)
copy over from sams version (#14) (@milankl)
initial docs structure (#15) (@milankl)
doc cleanup and developers (#16) (@milankl)
timestep! for 2D and 3D (#17) (@milankl)
Tk/tendencies (#18) (@tomkimpson)
mk/timestepping and horizontal diffusion (#19) (@milankl)
Mk/vertical (#23) (@milankl)
nlat=trunc+1 default resolution (#24) (@milankl)
leapfrog! without mem alloc (#25) (@milankl)
mk/timestepping (#26) (@milankl)
Style and convention in docs (#27) (@milankl)
Naming (#28) (@milankl)
Params renamed to Parameters (#29) (@milankl)
σ_levels, geopot renamed, n_stratosphere_levels introduced (#30) (@milankl)
Spectral transform benchamrk, clip negatives (#34) (@milankl)
Spectral transform with variable resolution (#35) (@milankl)
T31 default, mx=nx=T+1 (#36) (@milankl)
CompatHelper: add new compat entry for AssociatedLegendrePolynomials at version 1, (keep existing compat) (#37) (@github-actions[bot])
New spectral transform (#38) (@milankl)
Update tendencies structure (#39) (@tomkimpson)
Orography from high resolution (2048x1024) file (#41) (@milankl)
CompatHelper: bump compat for BitInformation to 0.4, (keep existing compat) (#43) (@github-actions[bot])
Spectral gradients and Laplacians (#44) (@milankl)
CompatHelper: bump compat for BitInformation to 0.5, (keep existing compat) (#46) (@github-actions[bot])
remove addition of Revise.jl to toml (#49) (@tomkimpson)
Updated get_spectral_tendencies() function (#51) (@tomkimpson)
doc latex with ` (#52) (@milankl)
initialisation test in Float32/64 (#54) (@milankl)
Initialize model to time stepping flow (#55) (@milankl)
Feedback pipeline (#56) (@milankl)
show PrognosticVariables with UnicodePlots (#58) (@milankl)
NetCDF output (#59) (@milankl)
Barotropic vorticity time integration (#60) (@milankl)
Mk/cleanup (#65) (@milankl)
performance: avoid mem alloc for legendre (#66) (@milankl)

Atmosphere - Atmospheric Composition and Dynamics - Julia
Published by github-actions[bot] about 3 years ago

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