nwfscSurvey

Tool to pull and process NWFSC West Coast groundfish survey data for use in PFMC groundfish stock assessments.
https://github.com/pfmc-assessments/nwfscsurvey

Category: Biosphere
Sub Category: Marine Life and Fishery

Keywords

r-package

Keywords from Contributors

stock-synthesis fisheries fisheries-stock-assessment bookdown rmarkdown latex ecology glmm spatial-analysis species-distribution-modelling

Last synced: 39 minutes ago
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Repository metadata

Tool to pull and process NWFSC West Coast groundfish survey data for use in PFMC groundfish stock assessments

• Host: GitHub
• URL: https://github.com/pfmc-assessments/nwfscsurvey
• Owner: pfmc-assessments
• Created: 2014-11-08T00:38:17.000Z (almost 12 years ago)
• Default Branch: main
• Last Pushed: 2026-07-21T18:25:17.000Z (20 days ago)
• Last Synced: 2026-07-21T20:23:01.688Z (20 days ago)
• Topics: r-package
• Language: R
• Homepage: http://pfmc-assessments.github.io/nwfscSurvey/
• Size: 13.2 MB
• Stars: 12
• Watchers: 7
• Forks: 8
• Open Issues: 18
• Releases: 11
• Metadata Files:
  • Readme: README.Rmd
  • Changelog: NEWS.md

README.Rmd

          


[![release date](https://img.shields.io/github/last-commit/pfmc-assessments/nwfscSurvey)](https://github.com/pfmc-assessments/nwfscSurvey/commits/main)
[![R-CMD-check](https://github.com/pfmc-assessments/nwfscSurvey/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/pfmc-assessments/nwfscSurvey/actions/workflows/R-CMD-check.yaml)
[![DOI](https://zenodo.org/badge/26344817.svg)](https://doi.org/10.5281/zenodo.15235956)


## Installation

`nwfscSurvey` provides code for analysis of the Northwest Fisheries Science Center (NWFSC) West Coast Groundfish Bottom Trawl, NWFSC
slope, Alaska Fisheries Science Center (AFSC) slope, and AFSC Triennial surveys. Code within this package allows
for pulling of data from the NWFSC data warehouse, calculating the design-based
indices of abundance, visualization of data, and processing length- and age-composition data for use in West Coast groundfish stock assessment.

This code was developed for use by scientists at the NWFSC and is intended to work on the specific data products that we have access to using methods specific to the needs of this group.

``` r
install.packages("remotes")
remotes::install_github("pfmc-assessments/nwfscSurvey")
```

## Package information

A [website](http://pfmc-assessments.github.io/nwfscSurvey/index.html) is now available for the package. The ["Get started"](http://pfmc-assessments.github.io/nwfscSurvey/articles/nwfscSurvey.html) tab provide general information on how to pull, visualize, and process survey data. Additionally, the ["Reference"](http://pfmc-assessments.github.io/nwfscSurvey/reference/index.html) tab provides a detailed list of all available functions. 

        

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Owner metadata

• Name: PFMC assessments
• Login: pfmc-assessments
• Email:
• Kind: organization
• Description: Repositories related to stock assessments for the Pacific Fishery Management Council
• Website:
• Location:
• Twitter:
• Company:
• Icon url: https://avatars.githubusercontent.com/u/9087871?v=4
• Repositories: 18
• Last ynced at: 2023-02-26T15:30:49.405Z
• Profile URL: https://github.com/pfmc-assessments

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GitHub Events

Total

• Release event: 4
• Delete event: 21
• Pull request event: 47
• Fork event: 2
• Issues event: 26
• Watch event: 2
• Issue comment event: 48
• Push event: 180
• Pull request review comment event: 6
• Pull request review event: 16
• Create event: 26

Last Year

• Release event: 1
• Delete event: 8
• Pull request event: 6
• Fork event: 1
• Issues event: 2
• Issue comment event: 6
• Push event: 83
• Pull request review comment event: 6
• Pull request review event: 3
• Create event: 9

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Committers metadata

Last synced: about 12 hours ago

Name	Email	Commits
Chantel Wetzel	c****l@n****v	603
Chantel Wetzel	c****l@n****v	118
kellijohnson-NOAA	k****n@n****v	65
iantaylor-NOAA	i****r@n****v	58
kellijohnson-NOAA	k****n@n****v	24
Eric Ward	e****d@n****v	18
allanhicks	f****s@g****m	12
John Wallace	J****e@n****v	11
Sean Anderson	s****n@s****a	7
Brian Langseth	b****h@n****v	6
Kiva Oken	k****n@g****m	4
James-Thorson	J****q@g****m	3
Maurice Goodman	g****e@g****m	3
Eric Ward	e****d	3
Kathryn Doering	k****g@n****v	2
Joshua Zahner	j****r@g****m	1

Committer domains:

• noaa.gov: 8
• seananderson.ca: 1
• nooa.gov: 1

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Issue and Pull Request metadata

Last synced: about 3 hours ago

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/pfmc-assessments/nwfscsurvey

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Dependencies

Score: 6.173786103901937