nwfscSurvey
Tool to pull and process NWFSC West Coast groundfish survey data for use in PFMC groundfish stock assessments.
https://github.com/pfmc-assessments/nwfscsurvey
Category: Biosphere
Sub Category: Marine Life and Fishery
Keywords from Contributors
stock-synthesis fisheries fisheries-stock-assessment bookdown rmarkdown latex ecology glmm spatial-analysis species-distribution-modelling
Last synced: about 3 hours ago
JSON representation
Repository metadata
Tool to pull and process NWFSC West Coast groundfish survey data for use in PFMC groundfish stock assessments
- Host: GitHub
- URL: https://github.com/pfmc-assessments/nwfscsurvey
- Owner: pfmc-assessments
- Created: 2014-11-08T00:38:17.000Z (over 10 years ago)
- Default Branch: main
- Last Pushed: 2025-04-17T12:43:00.000Z (13 days ago)
- Last Synced: 2025-04-17T23:53:57.475Z (13 days ago)
- Language: R
- Homepage: http://pfmc-assessments.github.io/nwfscSurvey/
- Size: 10.5 MB
- Stars: 11
- Watchers: 7
- Forks: 8
- Open Issues: 25
- Releases: 9
-
Metadata Files:
- Readme: README.md
- Changelog: NEWS.md
README.md
Installation
nwfscSurvey provides code for analysis of the Northwest Fisheries Science Center (NWFSC) West Coast Groundfish Bottom Trawl, NWFSC
slope, Alaska Fisheries Science Center (AFSC) slope, and AFSC Triennial surveys. Code within this package allows
for pulling of data from the NWFSC data warehouse, calculating the design-based
indices of abundance, visualization of data, and processing length- and age-composition data for use in West Coast groundfish stock assessment.
This code was developed for use by scientists at the NWFSC and is intended to work on the specific data products that we have access to using methods specific to the needs of this group.
install.packages("remotes")
remotes::install_github("pfmc-assessments/nwfscSurvey")
Package information
A website is now available for the package. The "Get started" tab provide general information on how to pull, visualize, and process survey data. Additionally, the "Reference" tab provides a detailed list of all available functions.
Owner metadata
- Name: PFMC assessments
- Login: pfmc-assessments
- Email:
- Kind: organization
- Description: Repositories related to stock assessments for the Pacific Fishery Management Council
- Website:
- Location:
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/9087871?v=4
- Repositories: 18
- Last ynced at: 2023-02-26T15:30:49.405Z
- Profile URL: https://github.com/pfmc-assessments
GitHub Events
Total
- Create event: 17
- Release event: 3
- Issues event: 22
- Watch event: 2
- Delete event: 13
- Issue comment event: 41
- Push event: 92
- Pull request review event: 13
- Pull request event: 40
- Fork event: 1
Last Year
- Create event: 17
- Release event: 3
- Issues event: 22
- Watch event: 2
- Delete event: 13
- Issue comment event: 41
- Push event: 92
- Pull request review event: 13
- Pull request event: 40
- Fork event: 1
Committers metadata
Last synced: 1 day ago
Total Commits: 747
Total Committers: 16
Avg Commits per committer: 46.688
Development Distribution Score (DDS): 0.423
Commits in past year: 233
Committers in past year: 8
Avg Commits per committer in past year: 29.125
Development Distribution Score (DDS) in past year: 0.275
| Name | Commits | |
|---|---|---|
| Chantel Wetzel | c****l@n****v | 431 |
| Chantel Wetzel | c****l@n****v | 118 |
| kellijohnson-NOAA | k****n@n****v | 65 |
| Ian Taylor | i****r@n****v | 40 |
| kellijohnson-NOAA | k****n@n****v | 24 |
| Eric Ward | e****d@n****v | 18 |
| allanhicks | f****s@g****m | 12 |
| John Wallace | J****e@n****v | 11 |
| Sean Anderson | s****n@s****a | 7 |
| Brian Langseth | b****h@n****v | 6 |
| Kiva Oken | k****n@g****m | 4 |
| Eric Ward | e****d | 3 |
| Maurice Goodman | g****e@g****m | 3 |
| James-Thorson | J****q@g****m | 3 |
| Joshua Zahner | j****r@g****m | 1 |
| Kathryn Doering | k****g@n****v | 1 |
Committer domains:
- noaa.gov: 8
- seananderson.ca: 1
- nooa.gov: 1
Issue and Pull Request metadata
Last synced: 1 day ago
Total issues: 84
Total pull requests: 86
Average time to close issues: 9 months
Average time to close pull requests: 18 days
Total issue authors: 10
Total pull request authors: 9
Average comments per issue: 2.92
Average comments per pull request: 1.21
Merged pull request: 77
Bot issues: 0
Bot pull requests: 28
Past year issues: 21
Past year pull requests: 44
Past year average time to close issues: 8 days
Past year average time to close pull requests: 6 days
Past year issue authors: 6
Past year pull request authors: 8
Past year average comments per issue: 1.43
Past year average comments per pull request: 0.93
Past year merged pull request: 41
Past year bot issues: 0
Past year bot pull requests: 15
Top Issue Authors
- kellijohnson-NOAA (31)
- chantelwetzel-noaa (22)
- iantaylor-NOAA (10)
- brianlangseth-NOAA (6)
- ericward-noaa (6)
- okenk (3)
- Curt-Whitmire-NOAA (2)
- Ovec8hkin (2)
- eeholmes (1)
- seananderson (1)
Top Pull Request Authors
- github-actions[bot] (28)
- chantelwetzel-noaa (23)
- kellijohnson-NOAA (19)
- iantaylor-NOAA (9)
- k-doering-NOAA (2)
- brianlangseth-NOAA (2)
- mcgoodman (1)
- Ovec8hkin (1)
- okenk (1)
Top Issue Labels
- enhancement (31)
- bug (11)
- warehouse (11)
- question (11)
- refactor (8)
- priority_low (5)
- documentation (2)
- help wanted (2)
Top Pull Request Labels
- refactor (4)
- bug (4)
- documentation (3)
- enhancement (3)
- testing (3)
Dependencies
- R >= 4.0 depends
- dplyr >= 1.0.0 depends
- chron * imports
- cowplot * imports
- ggmosaic >= 0.3.4 imports
- ggnewscale * imports
- ggokabeito * imports
- ggplot2 >= 3.0.0 imports
- glue * imports
- httr * imports
- janitor * imports
- jsonlite * imports
- lifecycle * imports
- purrr * imports
- reshape2 * imports
- rlang * imports
- stringr * imports
- tibble * imports
- tidyr * imports
- kableExtra * suggests
- knitr * suggests
- mapproj * suggests
- maps * suggests
- rmarkdown * suggests
- testthat * suggests
- usethis * suggests
- xtable * suggests
Score: 6.356107660695891