GBIF Alert

A GBIF-based early alert system for invasive species.
https://github.com/riparias/gbif-alert

Category: Biosphere
Sub Category: Terrestrial Wildlife

Keywords

biodiversity biodiversity-data biodiversity-informatics django gbif invasive-species webapp

Keywords from Contributors

oscibio dwc frictionlessdata aeroecology

Last synced: about 8 hours ago
JSON representation

Repository metadata

GBIF Alert is a GBIF occurrence based alert system.

Host: GitHub
URL: https://github.com/riparias/gbif-alert
Owner: riparias
License: mit
Created: 2021-08-25T09:58:51.000Z (almost 5 years ago)
Default Branch: main
Last Pushed: 2026-07-01T08:59:55.000Z (8 days ago)
Last Synced: 2026-07-04T12:02:49.987Z (4 days ago)
Topics: biodiversity, biodiversity-data, biodiversity-informatics, django, gbif, invasive-species, webapp
Language: Python
Homepage: https://gbif-alert-demo.thebinaryforest.net/
Size: 22 MB
Stars: 11
Watchers: 4
Forks: 6
Open Issues: 63
Releases: 0
Metadata Files:
- Readme: README.md
- Changelog: CHANGELOG.md
- Contributing: CONTRIBUTING.md
- License: LICENSE

GBIF Alert

GBIF Alert is a GBIF-based early alert system for invasive species.

🎉 GBIF Alert has been awarded the first prize of the GBIF Ebbe Nielsen Challenge 2023! 🎉

It is a reusable website engine powered by Django available under the MIT license.
Contributions are welcome! See CONTRIBUTING.md for more information.

Getting started

GBIF Alert allows you to monitor a list of species, and be notified of new occurrences on GBIF via email.

Multiple websites using GBIF alert (called instances) exists, in order to target different communities:

You are an end-user that just want to be informed of new occurrence in the GBIF network? Join an existing instance that covers your area and species of interest, register and start configuring your alerts! Here is a demonstration video: https://www.youtube.com/watch?v=bixaTGRIZ4A
You have more technical knowledge and want to install your own instance of GBIF Alert? No problem: GBIF Alert is fully configurable, and we provide facilities to make it easy to install and deploy.
See INSTALL.md for more information.

GBIF Alert instances in the wild

LIFE RIPARIAS Early Alert: production / development (Targets riparian invasive species in Belgium)
GBIF Alert demo instance (Always in sync with the devel branch of this repository)
The Belgian Biodiversity Platform uses GBIF alert under the hood as an API for the ManaIAS project.

API

GBIF Alert exposes a stable, supported public HTTP API (API v2) for programmatic access to its data.

Each instance documents its own API: visit /api-docs on any instance for an overview, with the interactive reference at /api/v2/docs and an OGC WFS service at /api/wfs/observations/. For example, on the LIFE RIPARIAS instance: https://alert.riparias.be/api-docs

The older /api/* JSON endpoints are deprecated in favour of API v2 and will be removed on 30 June 2027.

Owner metadata

Name: LIFE RIPARIAS
Login: riparias
Email:
Kind: organization
Description: Reaching Integrated and Prompt Action in Response to Invasive Alien Species
Website: https://riparias.be
Location: Belgium
Twitter: liferiparias
Company:
Icon url: https://avatars.githubusercontent.com/u/85938012?v=4
Repositories: 9
Last ynced at: 2023-03-04T01:58:59.045Z
Profile URL: https://github.com/riparias

GitHub Events

Total

Delete event: 32
Pull request event: 2
Fork event: 1
Issues event: 18
Watch event: 3
Issue comment event: 16
Push event: 137
Create event: 18

Last Year

Delete event: 32
Pull request event: 1
Fork event: 1
Issues event: 10
Watch event: 1
Issue comment event: 12
Push event: 114
Create event: 16

Committers metadata

Last synced: 2 days ago

Total Commits: 1,323
Total Committers: 4
Avg Commits per committer: 330.75
Development Distribution Score (DDS): 0.329

Commits in past year: 504
Committers in past year: 2
Avg Commits per committer in past year: 252.0
Development Distribution Score (DDS) in past year: 0.002

Name	Email	Commits
Nicolas Noé	n**s@n**u	888
Nicolas Noé	n**e@i**e	422
Damiano Oldoni	d**i@i**e	12
Jens Polspoel	j**s@z**e	1

Committer domains:

Issue and Pull Request metadata

Last synced: 6 days ago

Total issues: 183
Total pull requests: 60
Average time to close issues: 9 months
Average time to close pull requests: 8 days
Total issue authors: 10
Total pull request authors: 6
Average comments per issue: 2.58
Average comments per pull request: 0.17
Merged pull request: 51
Bot issues: 0
Bot pull requests: 7

Past year issues: 27
Past year pull requests: 47
Past year average time to close issues: 26 days
Past year average time to close pull requests: about 24 hours
Past year issue authors: 3
Past year pull request authors: 3
Past year average comments per issue: 1.85
Past year average comments per pull request: 0.04
Past year merged pull request: 46
Past year bot issues: 0
Past year bot pull requests: 0

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/riparias/gbif-alert

Top Issue Authors

niconoe (137)
damianooldoni (29)
peterdesmet (5)
timadriaens (4)
silenius (2)
filipmahieu (2)
nigelcharman (1)
LienReyserhove (1)
stevenpbachman (1)
jhnwllr (1)

Top Pull Request Authors

niconoe (49)
dependabot[bot] (7)
PhillRob (1)
TheJenne18 (1)
timadriaens (1)
damianooldoni (1)

Top Issue Labels

enhancement (78)
Maybe later (41)
Cleanup / robustness (26)
in progress (22)
UI (22)
bug (14)
missing tests (10)
infra (8)
priority Sept 2023 (7)
question (6)
documentation (4)
feedback wanted (4)
task (2)
marketing (2)
help wanted (1)

Top Pull Request Labels

dependencies (7)
javascript (6)
python (1)

Dependencies

package-lock.json npm

544 dependencies

package.json npm

@babel/core ^7.18.6 development
@types/bootstrap ^5.1.12 development
@types/d3 ^7.4.0 development
@types/lodash.debounce ^4.0.7 development
@types/luxon ^2.3.2 development
@types/uuid ^8.3.4 development
@vue/compiler-sfc ^3.2.37 development
babel-loader ^8.2.5 development
css-loader ^6.7.1 development
npm-check ^5.9.2 development
prettier ^2.7.1 development
style-loader ^3.3.1 development
ts-loader ^9.3.1 development
typescript ^4.7.4 development
vue-loader ^17.0.0 development
webpack ^5.73.0 development
webpack-cli ^4.10.0 development
webpack-merge ^5.8.0 development
@popperjs/core ^2.11.5
axios ^0.27.2
bootstrap ^5.1.3
bootstrap-icons ^1.8.3
d3 ^7.6.1
lodash ^4.17.21
lodash.debounce ^4.0.8
luxon ^2.4.0
nouislider ^15.6.0
ol ^6.14.1
qs ^6.11.0
uuid ^8.3.2
vue ^3.2.37

poetry.lock pypi

black 21.12b0 develop
django-stubs 1.9.0 develop
django-stubs-ext 0.5.0 develop
future 0.18.2 develop
gunicorn 20.1.0 develop
mapbox-vector-tile 1.2.1 develop
mypy 0.910 develop
mypy-extensions 0.4.3 develop
pathspec 0.9.0 develop
platformdirs 2.5.2 develop
pybrowsers 0.4.1 develop
pyclipper 1.3.0.post3 develop
python-dotenv 0.20.0 develop
pywin32 303 develop
pyxdg 0.27 develop
requests-mock 1.9.3 develop
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six 1.16.0 develop
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types-pytz 2022.1.1 develop
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types-requests 2.28.0 develop
types-urllib3 1.26.15 develop
typing-extensions 4.3.0 develop
webdriver-manager 3.8.0 develop
asgiref 3.5.2
async-timeout 4.0.2
atomicwrites 1.4.0
attrs 21.4.0
certifi 2022.6.15
charset-normalizer 2.1.0
click 8.1.3
colorama 0.4.5
crispy-bootstrap5 0.6
defusedxml 0.7.1
deprecated 1.2.13
diff-match-patch 20200713
django 4.0.6
django-cors-headers 3.13.0
django-crispy-forms 1.14.0
django-import-export 2.8.0
django-maintenance-mode 0.16.3
django-markdownx 4.0.0b1
django-rq 2.5.1
et-xmlfile 1.1.0
gbif-blocking-occurrence-download 0.1.1
html2text 2020.1.16
idna 3.3
importlib-metadata 4.12.0
iniconfig 1.1.1
jinja2 3.0.3
jinjasql 0.1.8
markdown 3.3.7
markuppy 1.14
markupsafe 2.1.1
odfpy 1.4.1
openpyxl 3.0.10
packaging 21.3
pillow 9.2.0
pluggy 1.0.0
protobuf 3.20.0
psycopg2-binary 2.9.3
py 1.11.0
pyparsing 3.0.9
pytest 6.2.5
python-dwca-reader 0.15.0
python-fsutil 0.6.1
pyyaml 6.0
redis 4.3.4
requests 2.28.1
rq 1.10.1
sqlparse 0.4.2
tablib 3.2.1
toml 0.10.2
tzdata 2022.1
urllib3 1.26.9
wrapt 1.14.1
xlrd 2.0.1
xlwt 1.3.0
zipp 3.8.0

pyproject.toml pypi

black ^21.8b0 develop
django-stubs ^1.8.0 develop
gunicorn ^20.1.0 develop
mapbox-vector-tile ^1.2.1 develop
mypy ^0.910 develop
requests-mock ^1.9.3 develop
selenium ^3.141.0 develop
types-requests ^2.27.15 develop
webdriver-manager ^3.4.2 develop
Django ^4.0
Jinja2 3.0.3
crispy-bootstrap5 ^0.6
django-cors-headers ^3.11.0
django-crispy-forms ^1.13.0
django-import-export ^2.7.1
django-maintenance-mode ^0.16.1
django-markdownx 4.0.0b1
django-rq ^2.5.1
gbif-blocking-occurrence-download ^0.1.0
html2text ^2020.1.16
jinjasql ^0.1.8
protobuf 3.20
psycopg2-binary ^2.9.1
python ^3.9
python-dwca-reader ^0.15.0
requests ^2.26.0

.github/workflows/django_tests.yml actions

actions/cache v2 composite
actions/checkout v2 composite
actions/setup-python v2 composite
snok/install-poetry v1 composite
postgis/postgis 13-3.1 docker
redis * docker

.github/workflows/deploy_demo.yml actions

appleboy/ssh-action master composite

Dockerfile docker

python 3.11-slim build

docker-compose.yml docker

niconoe/gbif-alert 1.4.1
niconoe/gbif-alert-nginx 1.4.1
postgis/postgis 15-3.3
redis 7.0.12

nginx/Dockerfile docker

nginx 1.21-alpine build

Score: 5.690359454324061

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README.md

GBIF Alert

Getting started

GBIF Alert instances in the wild

API

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