fundiversity -

Biosphere - Biodiversity Analysis and Metrics - R
Published by Rekyt over 2 years ago

fundiversity -

Biosphere - Biodiversity Analysis and Metrics - R
Published by Rekyt over 2 years ago

fundiversity - v1.1.1 - version

fundiversity 1.1.1

Minor changes

• Fix links in overview vignette in compliance with CRAN

fundiversity 1.1.0

Minor changes

• Change vignette names and indexing so that they are ordered similarly on the
  pkgdown website, on CRAN, and using vignette. Vignettes are renamed
  fundiversity_X-topic.Rmd but the overview vignette fundiversity.Rmd.
• Fully replace all URLs still pointing to
  https://github.com/bisaloo/fundiversity to
  https://github.com/funecology/fundiversity
• Update documentation of fd_*() functions for edge cases and arguments.
• Fix unuseful argument in remove_species_without_traits() that would display
  FALSE at the end of each message.
• Update parallel vignette with list of parallelizable function at the top and
  explain that vignette is pre-computed.
• Update performance/benchmark vignette to reflect actually ran benchmark in
  manuscript.

Bug fixes

• Fix a bug in the computation of fd_fdis() because of a misplaced square.
  NB: All FDis computation done with it to this day were wrong.

Biosphere - Biodiversity Analysis and Metrics - R
Published by Rekyt over 2 years ago

fundiversity - fundiversity v1.0.0

Major changes

• Add a vignette on numerical correctness named correctness, accessible
  with vignette("correctness", package = "fundiversity") (see https://hugogruson.fr/fundiversity/articles/correctness.html).
• Change version number to show that it's a stable release.

Minor changes

• fundiversity functions now error when used with non-continuous trait data
• future_apply() and future_lapply() calls in fd_fdis(), fd_fdiv(),
  fd_ric(), fd_fric_intersect() and fd_feve() now use
  future.globals = FALSE, thus making the internal code less error-prone and
  faster in parallel settings.

Internal changes

• Unit tests for non-continuous traits for all functions.
• Correct all URLs of the package

Biosphere - Biodiversity Analysis and Metrics - R
Published by Rekyt over 2 years ago

fundiversity - fundiversity 0.2.1

Internal changes

• Unit tests have been updated to work with testthat 3.1.0

Biosphere - Biodiversity Analysis and Metrics - R
Published by Bisaloo over 3 years ago

fundiversity - fundiversity v0.2.0

fundiversity v0.2.0

Major changes

• There is a new function fd_fric_intersect() to compute the intersection of
  convex hulls across pairs of sites.
• There is a new function fd_fdis to compute Functional Dispersion FDis.
• fd_fdiv(), fd_feve(), fd_fdis(), fd_fric() can now be computed in
  parallel with the future framework.
  Please refer to the parallelization vignette for more information.
• The convex hull computation in fd_fdiv(), fd_fric(), and
  fd_fric_intersect() is now cached thanks to the
  memoise package to speed up repeated runs. This
  behaviour can be disabled by running options(fundiversity.memoise = FALSE) at
  the start of your R session.

Biosphere - Biodiversity Analysis and Metrics - R
Published by Rekyt almost 4 years ago

fundiversity - fundiversity v.0.0.1

• First CRAN release 🎉!

Biosphere - Biodiversity Analysis and Metrics - R
Published by Rekyt about 4 years ago