SpeciesDistributionToolkit - SimpleSDMLayers-v1.3.0

SimpleSDMLayers SimpleSDMLayers-v1.3.0

Diff since SimpleSDMLayers-v1.2.2

Merged pull requests:

• Remove occurrences plotting from SDT (#424) (@tpoisot)
• semver(sdt): v1.6.0 with SimpleSDMPolygons (#427) (@gottacatchenall)
• SimpleSDMPolygons with re-exports from datasets (#429) (@tpoisot)
• SDMPolygons Makie.lines (#434) (@gottacatchenall)
• Phylopic v1 (#435) (@tpoisot)
• Polygons: Makie.lines a boundingbox (#437) (@gottacatchenall)
• GADM URL Typo (#440) (@gottacatchenall)
• SDMPolygons Makie extension supporting lines! and poly! without axis argument (#441) (@gottacatchenall)
• Release SDT post Phylopic 1 (#444) (@tpoisot)
• Fix various occint bugs (#447) (@tpoisot)

Closed issues:

• Move plotting function in SimpleSDMLayers (#422)
• Documentation update for OccurrencesInterface (#426)
• Phylopic v1 when? (#430)
• Add methods to do lines in addition to poly (#431)
• Some demo occurrences in OccurrencesInterface are wrong (#432)
• Boundingbox for SimpleSDMPolygons (#433)
• Typo in GADM url in SDMPolygons (#438)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 8 days ago

SpeciesDistributionToolkit - OccurrencesInterface-v1.1.1

OccurrencesInterface OccurrencesInterface-v1.1.1

Diff since OccurrencesInterface-v1.1.0

Merged pull requests:

• Remove occurrences plotting from SDT (#424) (@tpoisot)
• Fix the ways elements are collected from GBIFRecords (#425) (@tpoisot)
• semver(sdt): v1.6.0 with SimpleSDMPolygons (#427) (@gottacatchenall)
• Makie for layers (#428) (@tpoisot)
• SimpleSDMPolygons with re-exports from datasets (#429) (@tpoisot)
• SDMPolygons Makie.lines (#434) (@gottacatchenall)
• Phylopic v1 (#435) (@tpoisot)
• Polygons: Makie.lines a boundingbox (#437) (@gottacatchenall)
• GADM URL Typo (#440) (@gottacatchenall)
• SDMPolygons Makie extension supporting lines! and poly! without axis argument (#441) (@gottacatchenall)
• Release SDT post Phylopic 1 (#444) (@tpoisot)
• Fix various occint bugs (#447) (@tpoisot)

Closed issues:

• Move plotting function in SimpleSDMLayers (#422)
• Documentation update for OccurrencesInterface (#426)
• Phylopic v1 when? (#430)
• Add methods to do lines in addition to poly (#431)
• Some demo occurrences in OccurrencesInterface are wrong (#432)
• Boundingbox for SimpleSDMPolygons (#433)
• Typo in GADM url in SDMPolygons (#438)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 9 days ago

SpeciesDistributionToolkit - v1.6.1

SpeciesDistributionToolkit v1.6.1

Diff since v1.6.0

Merged pull requests:

• Phylopic v1 (#435) (@tpoisot)
• Release SDT post Phylopic 1 (#444) (@tpoisot)

Closed issues:

• Phylopic v1 when? (#430)
• Add methods to do lines in addition to poly (#431)
• Boundingbox for SimpleSDMPolygons (#433)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 9 days ago

SpeciesDistributionToolkit - Phylopic-v1.0.0

Phylopic Phylopic-v1.0.0

Diff since Phylopic-v0.0.5

First stable release, there are no breaking changes

Merged pull requests:

• Use CRS for SimpleSDMLayers (#227) (@tpoisot)
• CompatHelper: bump compat for MakieCore to 0.8, (keep existing compat) (#229) (@github-actions[bot])
• Fauxcurrences v0.2.0 (#232) (@tpoisot)
• SimpleSDMDatasets v0.2.0 (#233) (@tpoisot)
• SimpleSDMLayers v1.0.0 (#234) (@tpoisot)
• Update TagBot.yml (#246) (@tpoisot)
• Update README.md (#247) (@tpoisot)
• CompatHelper: add new compat entry for TestItems at version 1, (keep existing compat) (#248) (@github-actions[bot])
• Github actions for documentation (#249) (@tpoisot)
• semver(datasets): v0.2.1 (#250) (@tpoisot)
• VitePress for the top level doc site (#251) (@tpoisot)
• Cleanup tutorial + howto (#253) (@tpoisot)
• Future climate tutorial update (#255) (@tpoisot)
• Restore fauxcurrence page (#256) (@tpoisot)
• Simplify the navbar (#257) (@tpoisot)
• Add interpolate! (#260) (@tpoisot)
• Add a tutorial on building the BIOCLIM model (#261) (@tpoisot)
• Bug fix: source argument missing from interpolate (#262) (@tpoisot)
• Add support to mask/reveal/hide by polygons (#263) (@tpoisot)
• CompatHelper: add new compat entry for Downloads at version 1, (keep existing compat) (#264) (@github-actions[bot])
• Additional fields to the dataset interface (#265) (@tpoisot)
• Mosaic with polygons (#266) (@tpoisot)
• New interpolate method (#268) (@tpoisot)
• Bounding box when reading is now in WGS84 (#271) (@tpoisot)
• SDeMo (#272) (@tpoisot)
• Prepare main package for SDeMo interop (#273) (@tpoisot)
• chore: prep for tag (#274) (@tpoisot)
• Update CompatHelper.yml (#275) (@tpoisot)
• Create README.md (#276) (@tpoisot)
• removing unnecessary(?) return in _write_geotiff (#277) (@gottacatchenall)
• SDeMo update (#282) (@tpoisot)
• CHELSA url changed? (#283) (@tpoisot)
• SDeMo improvements: inflated response curves, better ensemble support, decision trees (#284) (@tpoisot)
• semver(sdt): v0.1.3 (#286) (@tpoisot)
• SDeMo QoL improvements (#289) (@tpoisot)
• feat(demo): ensemble counterfactuals (#292) (@tpoisot)
• OccurrencesInterface package (#294) (@tpoisot)
• Links to all doc websites on PR (#299) (@tpoisot)
• chore(occ): LICENSE (#304) (@tpoisot)
• Doc improvements for the top-level package (#305) (@tpoisot)
• SDeMo bugfix and QOL (#306) (@tpoisot)
• Bring VIF back (#307) (@tpoisot)
• SDeMo v1.0.0 (#309) (@tpoisot)
• Fauxcurrence v1.0.0 (#315) (@tpoisot)
• GBIF v1.0.0 (#317) (@tpoisot)
• SDT v1.0.0 (#320) (@tpoisot)
• Add SDeMo compat (#321) (@tpoisot)
• Fix remaining compat entries (#322) (@tpoisot)
• Add boundingbox function (#326) (@tpoisot)
• GBIF v1.0.1 (#330) (@tpoisot)
• Update Project.toml (#331) (@tpoisot)
• Improve access to GADM (#333) (@tpoisot)
• SDeMo - selection and stratification (#334) (@tpoisot)
• Copernicus land cover data (#335) (@tpoisot)
• Release SDT to track new data version (#339) (@tpoisot)
• Update CHANGELOG.md (#340) (@tpoisot)
• Make decision tree faster / more efficient (#341) (@tpoisot)
• Masking vectors of layers (#343) (@gottacatchenall)
• Performance improvements in SDeMo (#344) (@tpoisot)
• mask(::Vector{<:SDMLayer}, polygon) dispatch fix (#345) (@gottacatchenall)
• Export interpolate! (#348) (@tpoisot)
• Balanced bootstrap in SDeMo (#349) (@tpoisot)
• Add logistic regression to SDeMo (#350) (@tpoisot)
• semver(sdt): v0.1.3 (#351) (@tpoisot)
• Additional options for logistic regression (#352) (@tpoisot)
• Fixed show method (#353) (@tpoisot)
• Add support for Clustering (#354) (@tpoisot)
• Add SpatialBoundaries support through an extension (#355) (@tpoisot)
• Safe threading in SDeMo (#359) (@tpoisot)
• Clustering quality (#360) (@tpoisot)
• DistanceToEvent performance (#361) (@tpoisot)
• Dispatch for boundingbox on vector of occurrences (#362) (@tpoisot)
• QoL improvements for SDeMo (#367) (@tpoisot)
• Add support for NeutralLandscapes (#369) (@tpoisot)
• Fix variable selection verbose output (#373) (@tpoisot)
• Support for the STAC package through an extension (#374) (@tpoisot)
• Shapley on novel data (#376) (@tpoisot)
• Use ZipArchives to get GADM data (#378) (@tpoisot)
• Use new tests + ZipArchives for SimpleSDMDatasets (#383) (@tpoisot)
• Introduces function for OSM / removes all UC Davis requests for docs (#384) (@tpoisot)
• Layers cleanup - coarsen + mvstats (#386) (@tpoisot)
• Indexing by coordinate speed-up with binary search (#388) (@gottacatchenall)
• Fix the zip file issue (#390) (@tpoisot)
• SimpleSDMLayers v1.2.1 (#391) (@tpoisot)
• SDeMo various fixes (#393) (@tpoisot)
• Improve polygon masking/simplification (#396) (@tpoisot)
• Downloader is not using the right call to downloadtype for future data (#397) (@tpoisot)
• Make logistic regression more memory efficient (#399) (@tpoisot)
• Automatically link to issues from the changelog (#403) (@tpoisot)
• PseudoAbsences.jl (#404) (@tpoisot)
• Variable selection improvements (#410) (@tpoisot)
• SDT new version with pseudo absences (#413) (@tpoisot)
• Bug in sampling from Bool layers (#415) (@tpoisot)
• SimpleSDMPolygons (#417) (@gottacatchenall)
• Load and save occurrences from JSON files (#421) (@tpoisot)
• Default data and plotting for OccInt (#423) (@tpoisot)
• Remove occurrences plotting from SDT (#424) (@tpoisot)
• Fix the ways elements are collected from GBIFRecords (#425) (@tpoisot)
• semver(sdt): v1.6.0 with SimpleSDMPolygons (#427) (@gottacatchenall)
• Makie for layers (#428) (@tpoisot)
• SimpleSDMPolygons with re-exports from datasets (#429) (@tpoisot)
• SDMPolygons Makie.lines (#434) (@gottacatchenall)
• Phylopic v1 (#435) (@tpoisot)
• Polygons: Makie.lines a boundingbox (#437) (@gottacatchenall)
• GADM URL Typo (#440) (@gottacatchenall)
• SDMPolygons Makie extension supporting lines! and poly! without axis argument (#441) (@gottacatchenall)

Closed issues:

• ecoClimate - Climatic layers from PMIP3 CMIP5 (#33)
• Ecoregions (#49)
• Wrap MultivariateStats (#203)
• DuckDB (#205)
• Move test to @testitem (#211)
• Move vignettes out of the documentation? (#213)
• LUH² (#217)
• PaleoClim (#228)
• STAC (#230)
• Masking/segmentating layer based on vector (#231)
• Move documentation to VitePress (#245)
• Restore the Fauxcurrences tutorial (#252)
• Update the tutorial for future climate data (#254)
• Additional method to interpolate when we already have the destination layer (#258)
• Add fields to the SimpleSDMDatasets interface (#259)
• interpolate layer to same CRS/size as target layer (#267)
• zeros/ones for layers is buggy - is it maintaining everything??? (#269)
• The bounding box should be converted from WGS84 to the layer CRS (#270)
• The fscore formula is wrong (#278)
• Dispatch for Ensemble prediction is ambiguous (#279)
• Define abstract types for Bagging and Ensemble (#280)
• Add pop!, push!, etc to Ensemble (#281)
• New versions (note to self) (#285)
• SDeMo chokes on some decision trees when a single node is involved (#287)
• Add maxdepth to decision trees (#288)
• add a dispatch to the ConfusionMatrix functions (#290)
• cannot cross-validate when using the consensus argument (#293)
• data providers are flaky (#295)
• Update gameplan (#296)
• Add a "cookbook" section to the manual (#297)
• Update the PR comment issue (#298)
• Add a benchmark that runs on PRs (#300)
• Tag GBIF v1.0.0 (#301)
• Tag Fauxcurrences v1.0.0 (#302)
• Tag SpeciesDistributionToolkit v1.0.0 (#303)
• Copernicus fractional layers (#324)
• Generic function to get a bounding box in WGS84 from an arbitrary object (#325)
• Add link to the documentation (#327)
• calling a performance measure on a tuple should give a nice output (#328)
• GBIF needs patch release (#329)
• boundingbox doesn't work on a vector of Occurrence not wrapped in an Occurrences object (#336)
• Memory leak in variable selection? (#337)
• Potential performance improvement for masking a vector of polygons (#342)
• coarsen is gone (#347)
• Add support for clustering quality (#356)
• Update the clustering interface to work on a vector of layers (#357)
• Likely erroneous use of Threads.nthreads and Threads.threadid (#358)
• Add a method to save a model with logistic classifier (#363)
• Improve output for logistic models (#364)
• Use the data not part of training to measure valid. loss on Logistic (#365)
• Improve the verbose output of variable selection (#366)
• Support for NeutralLandscapes (#368)
• SDeMo doesn't load some hyper-parameters (#371)
• Number of variables reported during variable selection is wrong (#372)
• Shapley values on a layer may not work when using a different layer than was used for training (#375)
• GADM weirdness (#377)
• Use ZipArchives for raster data too (#379)
• The UC Davis toaster / server situation (#380)
• Add support for NaturalEarth polygons (#381)
• Work through documentation to remove all WorldClim and GADM calls (#382)
• Use nominatim API to get geojson directly (#385)
• Potential way to improve indexing by coordinate from O(n) to O(log(N)) (#387)
• Bug when reading zip files from SimpleSDMDatasets (#389)
• _mcsample is too restrictive about types (#392)
• PolygonOps requires that the first and last points are the same (#394)
• Mask for polygons should be threaded (#395)
• Tweaks to the polygon masking vignette (#398)
• Variable selection accidentally resets the model (#400)
• Add issue reference in the changelogs (#401)
• Split pseudo absences code (#402)
• Add variable selection for bagging models (#405)
• Add variable selection for ensemble models (#406)
• Logistic regression should de-mean the data (#408)
• New version using PseudoAbsences (#411)
• Sampling from Boolean layers is wrong (#414)
• Move plotting function in SimpleSDMLayers (#422)
• Phylopic v1 when? (#430)
• Typo in GADM url in SDMPolygons (#438)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 9 days ago

SpeciesDistributionToolkit - SimpleSDMPolygons-v1.0.4

SimpleSDMPolygons SimpleSDMPolygons-v1.0.4

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 9 days ago

SpeciesDistributionToolkit - SimpleSDMPolygons-v1.0.3

SimpleSDMPolygons SimpleSDMPolygons-v1.0.3

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 9 days ago

SpeciesDistributionToolkit - v1.6.0

SpeciesDistributionToolkit v1.6.0

Diff since v1.5.1

Merged pull requests:

• semver(sdt): v1.6.0 with SimpleSDMPolygons (#427) (@gottacatchenall)
• SimpleSDMPolygons with re-exports from datasets (#429) (@tpoisot)
• SDMPolygons Makie.lines (#434) (@gottacatchenall)
• Polygons: Makie.lines a boundingbox (#437) (@gottacatchenall)
• GADM URL Typo (#440) (@gottacatchenall)
• SDMPolygons Makie extension supporting lines! and poly! without axis argument (#441) (@gottacatchenall)

Closed issues:

• Typo in GADM url in SDMPolygons (#438)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 9 days ago

SpeciesDistributionToolkit - v1.5.1

SpeciesDistributionToolkit v1.5.1

Diff since v1.5.0

Merged pull requests:

• SimpleSDMPolygons (#417) (@gottacatchenall)
• Load and save occurrences from JSON files (#421) (@tpoisot)
• Default data and plotting for OccInt (#423) (@tpoisot)
• Remove occurrences plotting from SDT (#424) (@tpoisot)
• Fix the ways elements are collected from GBIFRecords (#425) (@tpoisot)
• Makie for layers (#428) (@tpoisot)

Closed issues:

• Ecoregions (#49)
• Move plotting function in SimpleSDMLayers (#422)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 17 days ago

SpeciesDistributionToolkit - SimpleSDMLayers-v1.2.2

SimpleSDMLayers SimpleSDMLayers-v1.2.2

Diff since SimpleSDMLayers-v1.2.1

Merged pull requests:

• SDeMo various fixes (#393) (@tpoisot)
• Improve polygon masking/simplification (#396) (@tpoisot)
• Downloader is not using the right call to downloadtype for future data (#397) (@tpoisot)
• Make logistic regression more memory efficient (#399) (@tpoisot)
• Automatically link to issues from the changelog (#403) (@tpoisot)
• PseudoAbsences.jl (#404) (@tpoisot)
• Variable selection improvements (#410) (@tpoisot)
• SDT new version with pseudo absences (#413) (@tpoisot)
• Bug in sampling from Bool layers (#415) (@tpoisot)
• SimpleSDMPolygons (#417) (@gottacatchenall)
• Load and save occurrences from JSON files (#421) (@tpoisot)
• Default data and plotting for OccInt (#423) (@tpoisot)
• Fix the ways elements are collected from GBIFRecords (#425) (@tpoisot)
• Makie for layers (#428) (@tpoisot)

Closed issues:

• Ecoregions (#49)
• Add a benchmark that runs on PRs (#300)
• SDeMo doesn't load some hyper-parameters (#371)
• _mcsample is too restrictive about types (#392)
• PolygonOps requires that the first and last points are the same (#394)
• Mask for polygons should be threaded (#395)
• Tweaks to the polygon masking vignette (#398)
• Variable selection accidentally resets the model (#400)
• Add issue reference in the changelogs (#401)
• Split pseudo absences code (#402)
• Add variable selection for bagging models (#405)
• Add variable selection for ensemble models (#406)
• Logistic regression should de-mean the data (#408)
• New version using PseudoAbsences (#411)
• Sampling from Boolean layers is wrong (#414)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 17 days ago

SpeciesDistributionToolkit - GBIF-v1.0.2

GBIF GBIF-v1.0.2

Diff since GBIF-v1.0.1

Merged pull requests:

• Improve access to GADM (#333) (@tpoisot)
• SDeMo - selection and stratification (#334) (@tpoisot)
• Copernicus land cover data (#335) (@tpoisot)
• Release SDT to track new data version (#339) (@tpoisot)
• Update CHANGELOG.md (#340) (@tpoisot)
• Make decision tree faster / more efficient (#341) (@tpoisot)
• Masking vectors of layers (#343) (@gottacatchenall)
• Performance improvements in SDeMo (#344) (@tpoisot)
• mask(::Vector{<:SDMLayer}, polygon) dispatch fix (#345) (@gottacatchenall)
• Export interpolate! (#348) (@tpoisot)
• Balanced bootstrap in SDeMo (#349) (@tpoisot)
• Add logistic regression to SDeMo (#350) (@tpoisot)
• semver(sdt): v0.1.3 (#351) (@tpoisot)
• Additional options for logistic regression (#352) (@tpoisot)
• Fixed show method (#353) (@tpoisot)
• Add support for Clustering (#354) (@tpoisot)
• Add SpatialBoundaries support through an extension (#355) (@tpoisot)
• Safe threading in SDeMo (#359) (@tpoisot)
• Clustering quality (#360) (@tpoisot)
• DistanceToEvent performance (#361) (@tpoisot)
• Dispatch for boundingbox on vector of occurrences (#362) (@tpoisot)
• QoL improvements for SDeMo (#367) (@tpoisot)
• Add support for NeutralLandscapes (#369) (@tpoisot)
• Fix variable selection verbose output (#373) (@tpoisot)
• Support for the STAC package through an extension (#374) (@tpoisot)
• Shapley on novel data (#376) (@tpoisot)
• Use ZipArchives to get GADM data (#378) (@tpoisot)
• Use new tests + ZipArchives for SimpleSDMDatasets (#383) (@tpoisot)
• Introduces function for OSM / removes all UC Davis requests for docs (#384) (@tpoisot)
• Layers cleanup - coarsen + mvstats (#386) (@tpoisot)
• Indexing by coordinate speed-up with binary search (#388) (@gottacatchenall)
• Fix the zip file issue (#390) (@tpoisot)
• SimpleSDMLayers v1.2.1 (#391) (@tpoisot)
• SDeMo various fixes (#393) (@tpoisot)
• Improve polygon masking/simplification (#396) (@tpoisot)
• Downloader is not using the right call to downloadtype for future data (#397) (@tpoisot)
• Make logistic regression more memory efficient (#399) (@tpoisot)
• Automatically link to issues from the changelog (#403) (@tpoisot)
• PseudoAbsences.jl (#404) (@tpoisot)
• Variable selection improvements (#410) (@tpoisot)
• SDT new version with pseudo absences (#413) (@tpoisot)
• Bug in sampling from Bool layers (#415) (@tpoisot)
• SimpleSDMPolygons (#417) (@gottacatchenall)
• Load and save occurrences from JSON files (#421) (@tpoisot)
• Default data and plotting for OccInt (#423) (@tpoisot)
• Fix the ways elements are collected from GBIFRecords (#425) (@tpoisot)

Closed issues:

• Ecoregions (#49)
• Wrap MultivariateStats (#203)
• STAC (#230)
• Add a "cookbook" section to the manual (#297)
• Add a benchmark that runs on PRs (#300)
• Copernicus fractional layers (#324)
• Add link to the documentation (#327)
• calling a performance measure on a tuple should give a nice output (#328)
• boundingbox doesn't work on a vector of Occurrence not wrapped in an Occurrences object (#336)
• Memory leak in variable selection? (#337)
• Potential performance improvement for masking a vector of polygons (#342)
• coarsen is gone (#347)
• Add support for clustering quality (#356)
• Update the clustering interface to work on a vector of layers (#357)
• Likely erroneous use of Threads.nthreads and Threads.threadid (#358)
• Add a method to save a model with logistic classifier (#363)
• Improve output for logistic models (#364)
• Use the data not part of training to measure valid. loss on Logistic (#365)
• Improve the verbose output of variable selection (#366)
• Support for NeutralLandscapes (#368)
• SDeMo doesn't load some hyper-parameters (#371)
• Number of variables reported during variable selection is wrong (#372)
• Shapley values on a layer may not work when using a different layer than was used for training (#375)
• GADM weirdness (#377)
• Use ZipArchives for raster data too (#379)
• The UC Davis toaster / server situation (#380)
• Add support for NaturalEarth polygons (#381)
• Work through documentation to remove all WorldClim and GADM calls (#382)
• Use nominatim API to get geojson directly (#385)
• Potential way to improve indexing by coordinate from O(n) to O(log(N)) (#387)
• Bug when reading zip files from SimpleSDMDatasets (#389)
• _mcsample is too restrictive about types (#392)
• PolygonOps requires that the first and last points are the same (#394)
• Mask for polygons should be threaded (#395)
• Tweaks to the polygon masking vignette (#398)
• Variable selection accidentally resets the model (#400)
• Add issue reference in the changelogs (#401)
• Split pseudo absences code (#402)
• Add variable selection for bagging models (#405)
• Add variable selection for ensemble models (#406)
• Logistic regression should de-mean the data (#408)
• New version using PseudoAbsences (#411)
• Sampling from Boolean layers is wrong (#414)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 17 days ago

SpeciesDistributionToolkit - OccurrencesInterface-v1.1.0

OccurrencesInterface OccurrencesInterface-v1.1.0

Diff since OccurrencesInterface-v1.0.0

Merged pull requests:

• Doc improvements for the top-level package (#305) (@tpoisot)
• SDeMo v1.0.0 (#309) (@tpoisot)
• Fauxcurrence v1.0.0 (#315) (@tpoisot)
• GBIF v1.0.0 (#317) (@tpoisot)
• SDT v1.0.0 (#320) (@tpoisot)
• Add SDeMo compat (#321) (@tpoisot)
• Fix remaining compat entries (#322) (@tpoisot)
• Add boundingbox function (#326) (@tpoisot)
• GBIF v1.0.1 (#330) (@tpoisot)
• Update Project.toml (#331) (@tpoisot)
• Improve access to GADM (#333) (@tpoisot)
• SDeMo - selection and stratification (#334) (@tpoisot)
• Copernicus land cover data (#335) (@tpoisot)
• Release SDT to track new data version (#339) (@tpoisot)
• Update CHANGELOG.md (#340) (@tpoisot)
• Make decision tree faster / more efficient (#341) (@tpoisot)
• Masking vectors of layers (#343) (@gottacatchenall)
• Performance improvements in SDeMo (#344) (@tpoisot)
• mask(::Vector{<:SDMLayer}, polygon) dispatch fix (#345) (@gottacatchenall)
• Export interpolate! (#348) (@tpoisot)
• Balanced bootstrap in SDeMo (#349) (@tpoisot)
• Add logistic regression to SDeMo (#350) (@tpoisot)
• semver(sdt): v0.1.3 (#351) (@tpoisot)
• Additional options for logistic regression (#352) (@tpoisot)
• Fixed show method (#353) (@tpoisot)
• Add support for Clustering (#354) (@tpoisot)
• Add SpatialBoundaries support through an extension (#355) (@tpoisot)
• Safe threading in SDeMo (#359) (@tpoisot)
• Clustering quality (#360) (@tpoisot)
• DistanceToEvent performance (#361) (@tpoisot)
• Dispatch for boundingbox on vector of occurrences (#362) (@tpoisot)
• QoL improvements for SDeMo (#367) (@tpoisot)
• Add support for NeutralLandscapes (#369) (@tpoisot)
• Fix variable selection verbose output (#373) (@tpoisot)
• Support for the STAC package through an extension (#374) (@tpoisot)
• Shapley on novel data (#376) (@tpoisot)
• Use ZipArchives to get GADM data (#378) (@tpoisot)
• Use new tests + ZipArchives for SimpleSDMDatasets (#383) (@tpoisot)
• Introduces function for OSM / removes all UC Davis requests for docs (#384) (@tpoisot)
• Layers cleanup - coarsen + mvstats (#386) (@tpoisot)
• Indexing by coordinate speed-up with binary search (#388) (@gottacatchenall)
• Fix the zip file issue (#390) (@tpoisot)
• SimpleSDMLayers v1.2.1 (#391) (@tpoisot)
• SDeMo various fixes (#393) (@tpoisot)
• Improve polygon masking/simplification (#396) (@tpoisot)
• Downloader is not using the right call to downloadtype for future data (#397) (@tpoisot)
• Make logistic regression more memory efficient (#399) (@tpoisot)
• Automatically link to issues from the changelog (#403) (@tpoisot)
• PseudoAbsences.jl (#404) (@tpoisot)
• Variable selection improvements (#410) (@tpoisot)
• SDT new version with pseudo absences (#413) (@tpoisot)
• Bug in sampling from Bool layers (#415) (@tpoisot)
• SimpleSDMPolygons (#417) (@gottacatchenall)
• Load and save occurrences from JSON files (#421) (@tpoisot)
• Default data and plotting for OccInt (#423) (@tpoisot)

Closed issues:

• Ecoregions (#49)
• Wrap MultivariateStats (#203)
• STAC (#230)
• data providers are flaky (#295)
• Update gameplan (#296)
• Add a "cookbook" section to the manual (#297)
• Add a benchmark that runs on PRs (#300)
• Tag GBIF v1.0.0 (#301)
• Tag Fauxcurrences v1.0.0 (#302)
• Tag SpeciesDistributionToolkit v1.0.0 (#303)
• Copernicus fractional layers (#324)
• Generic function to get a bounding box in WGS84 from an arbitrary object (#325)
• Add link to the documentation (#327)
• calling a performance measure on a tuple should give a nice output (#328)
• GBIF needs patch release (#329)
• boundingbox doesn't work on a vector of Occurrence not wrapped in an Occurrences object (#336)
• Memory leak in variable selection? (#337)
• Potential performance improvement for masking a vector of polygons (#342)
• coarsen is gone (#347)
• Add support for clustering quality (#356)
• Update the clustering interface to work on a vector of layers (#357)
• Likely erroneous use of Threads.nthreads and Threads.threadid (#358)
• Add a method to save a model with logistic classifier (#363)
• Improve output for logistic models (#364)
• Use the data not part of training to measure valid. loss on Logistic (#365)
• Improve the verbose output of variable selection (#366)
• Support for NeutralLandscapes (#368)
• SDeMo doesn't load some hyper-parameters (#371)
• Number of variables reported during variable selection is wrong (#372)
• Shapley values on a layer may not work when using a different layer than was used for training (#375)
• GADM weirdness (#377)
• Use ZipArchives for raster data too (#379)
• The UC Davis toaster / server situation (#380)
• Add support for NaturalEarth polygons (#381)
• Work through documentation to remove all WorldClim and GADM calls (#382)
• Use nominatim API to get geojson directly (#385)
• Potential way to improve indexing by coordinate from O(n) to O(log(N)) (#387)
• Bug when reading zip files from SimpleSDMDatasets (#389)
• _mcsample is too restrictive about types (#392)
• PolygonOps requires that the first and last points are the same (#394)
• Mask for polygons should be threaded (#395)
• Tweaks to the polygon masking vignette (#398)
• Variable selection accidentally resets the model (#400)
• Add issue reference in the changelogs (#401)
• Split pseudo absences code (#402)
• Add variable selection for bagging models (#405)
• Add variable selection for ensemble models (#406)
• Logistic regression should de-mean the data (#408)
• New version using PseudoAbsences (#411)
• Sampling from Boolean layers is wrong (#414)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 19 days ago

SpeciesDistributionToolkit - v1.5.0

SpeciesDistributionToolkit v1.5.0

Diff since v1.4.3

The PseudoAbsences package now handles PA generation

Merged pull requests:

• Downloader is not using the right call to downloadtype for future data (#397) (@tpoisot)
• Make logistic regression more memory efficient (#399) (@tpoisot)
• Automatically link to issues from the changelog (#403) (@tpoisot)
• PseudoAbsences.jl (#404) (@tpoisot)
• Variable selection improvements (#410) (@tpoisot)
• SDT new version with pseudo absences (#413) (@tpoisot)
• Bug in sampling from Bool layers (#415) (@tpoisot)

Closed issues:

• Add a benchmark that runs on PRs (#300)
• Tweaks to the polygon masking vignette (#398)
• Variable selection accidentally resets the model (#400)
• Add issue reference in the changelogs (#401)
• Split pseudo absences code (#402)
• Add variable selection for bagging models (#405)
• Add variable selection for ensemble models (#406)
• Logistic regression should de-mean the data (#408)
• New version using PseudoAbsences (#411)
• Sampling from Boolean layers is wrong (#414)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] about 1 month ago

SpeciesDistributionToolkit - PseudoAbsences-v1.0.1

PseudoAbsences PseudoAbsences-v1.0.1

Diff since PseudoAbsences-v1.0.0

• fixed a bug when sampling background points from Bool layers

Merged pull requests:

• Variable selection improvements (#410) (@tpoisot)
• Bug in sampling from Bool layers (#415) (@tpoisot)

Closed issues:

• Add a benchmark that runs on PRs (#300)
• Variable selection accidentally resets the model (#400)
• Add variable selection for bagging models (#405)
• Add variable selection for ensemble models (#406)
• Logistic regression should de-mean the data (#408)
• Sampling from Boolean layers is wrong (#414)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] about 1 month ago

SpeciesDistributionToolkit - SDeMo-v1.4.0

SDeMo SDeMo-v1.4.0

Diff since SDeMo-v1.3.4

• added support Bagging models as a component in an Ensemble
• added support for null classifiers based on Bagging models
• added variable selection for Bagging models [#405]
• added a more general syntax for variable selection (VariableSelectionStrategy)
• added a ChainedTransform type to chain two data transformation steps, useful for PCA + z-score [#408]
• fixed the issue with variable selection reseting the model variables [#400]
• added a method for noselection! where no folds are given

Merged pull requests:

• Automatically link to issues from the changelog (#403) (@tpoisot)
• PseudoAbsences.jl (#404) (@tpoisot)
• Variable selection improvements (#410) (@tpoisot)

Closed issues:

• Add a benchmark that runs on PRs (#300)
• Tweaks to the polygon masking vignette (#398)
• Variable selection accidentally resets the model (#400)
• Add issue reference in the changelogs (#401)
• Split pseudo absences code (#402)
• Add variable selection for bagging models (#405)
• Add variable selection for ensemble models (#406)
• Logistic regression should de-mean the data (#408)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] about 1 month ago

SpeciesDistributionToolkit - PseudoAbsences-v1.0.0

PseudoAbsences PseudoAbsences-v1.0.0

Merged pull requests:

• CompatHelper: add new compat entry for Reexport at version 1, (keep existing compat) (#3) (@github-actions[bot])
• Fix the issue with NODATA using the wrong encoding (#15) (@tpoisot)
• Replace collect by values (#18) (@tpoisot)
• Fix SimpleSDMLayers tests (#19) (@tpoisot)
• CompatHelper: add new compat entry for ArchGDAL at version 0.9, (keep existing compat) (#22) (@github-actions[bot])
• Convert to WGS84 using GDAL_WARP if needed (#34) (@tpoisot)
• CompatHelper: add new compat entry for GDAL at version 1, (keep existing compat) (#41) (@github-actions[bot])
• Allow additional drivers to the geotiff writer (#47) (@tpoisot)
• [GBIF] add option to look for vector of taxa (#57) (@tpoisot)
• Update the vignette on stats (#58) (@tpoisot)
• Move the pseudo-absences to the top package and add additional methods (#59) (@tpoisot)
• CompatHelper: add new compat entry for Distances at version 0.10, (keep existing compat) (#67) (@github-actions[bot])
• CompatHelper: add new compat entry for StatsBase at version 0.33, (keep existing compat) (#69) (@github-actions[bot])
• Add additional metadata to the providers (#72) (@tpoisot)
• Add a Tables.jl interface for layers (#82) (@tpoisot)
• CompatHelper: add new compat entry for Tables at version 1, (keep existing compat) (#85) (@github-actions[bot])
• Aggregate code coverage analysis (#87) (@tpoisot)
• Work on the dataset cards (#88) (@tpoisot)
• Add some tests to SimpleSDMLayers (#89) (@tpoisot)
• Merge git tags (#92) (@tpoisot)
• [GBIF] Tables.jl (#96) (@tpoisot)
• [SimpleSDMLayers] cell size (#98) (@tpoisot)
• 📝 README (#100) (@tpoisot)
• CompatHelper: add new compat entry for GBIF at version 0.4, (keep existing compat) (#102) (@github-actions[bot])
• Make all layers broadcastable (#103) (@tpoisot)
• 🗺️ Update plotting code to work with Makie as a default (#105) (@tpoisot)
• CompatHelper: add new compat entry for SimpleSDMDatasets at version 0.1, (keep existing compat) (#108) (@github-actions[bot])
• CompatHelper: bump compat for HTTP to 1 for package GBIF, (keep existing compat) (#109) (@github-actions[bot])
• CompatHelper: add new compat entry for GBIF at version 0.4 for package Fauxcurrences, (keep existing compat) (#112) (@github-actions[bot])
• CompatHelper: bump compat for ArchGDAL to 0.10, (keep existing compat) (#114) (@github-actions[bot])
• CompatHelper: add new compat entry for MakieCore at version 0.6, (keep existing compat) (#132) (@github-actions[bot])
• CompatHelper: add new compat entry for SimpleSDMLayers at version 0.9, (keep existing compat) (#133) (@github-actions[bot])
• CompatHelper: add new compat entry for SimpleSDMLayers at version 0.9 for package Fauxcurrences, (keep existing compat) (#135) (@github-actions[bot])
• Bring Fauxcurrences back in the main package (#137) (@tpoisot)
• CompatHelper: add new compat entry for Fauxcurrences at version 0.1, (keep existing compat) (#141) (@github-actions[bot])
• Fix clipping with exact coordinates (#144) (@gabrieldansereau)
• 🐛 correct check on layer inner type (#146) (@tpoisot)
• ✨ Split a layer into tiles (#148) (@tpoisot)
• Test for clipping with natural coordinates (#152) (@gabrieldansereau)
• 🩹 SimpleSDMLayers handling of clip with coordinates on cell boundaries (#153) (@tpoisot)
• 🐛 Update the stitching code to get the right bounding box (#155) (@tpoisot)
• GBIF throws 404 (not 410) for deleted resources (#156) (@tpoisot)
• ✅ add edge case test for clip in SpeciesDistributionToolkit (#159) (@gabrieldansereau)
• compression/format kwargs for geotiffs (#161) (@gottacatchenall)
• fix typos (#162) (@spaette)
• Update the documentation (#163) (@tpoisot)
• Fix the GBIF issue for single argument queries (#166) (@tpoisot)
• Fix the naming issue when imported from a submodule (#167) (@tpoisot)
• Phylopic wrapper (#169) (@tpoisot)
• Read the GBIF enums from the API endpoints (#170) (@tpoisot)
• compat(phylopic): add compat entries (#176) (@tpoisot)
• Update the contributing guidelines (#177) (@tpoisot)
• Add GBIF/Phylopic integration (#179) (@tpoisot)
• Build website for tagged version (#180) (@tpoisot)
• CompatHelper: bump compat for StatsBase to 0.34, (keep existing compat) (#183) (@github-actions[bot])
• CompatHelper: bump compat for StatsBase to 0.34 for package Fauxcurrences, (keep existing compat) (#184) (@github-actions[bot])
• CompatHelper: bump compat for StatsBase to 0.34 for package SimpleSDMLayers, (keep existing compat) (#185) (@github-actions[bot])
• Add methods to invert a layer (#188) (@tpoisot)
• Fixes the geotiff open (#191) (@tpoisot)
• bug(datasets): keychecker fails to check some wrong arguments (#193) (@tpoisot)
• Improving WithinRadius performance (#196) (@gottacatchenall)
• Adding Offset Arrays back as a dependency (#197) (@gottacatchenall)
• Build issue on phylopic (#199) (@tpoisot)
• fix(GBIF): some records are missing a synonym field (#200) (@tpoisot)
• CompatHelper: add new compat entry for OffsetArrays at version 1, (keep existing compat) (#201) (@github-actions[bot])
• Change sample and add DistanceToEvent (#207) (@tpoisot)
• semver(layers): fix (#209) (@tpoisot)
• Bug/layers/method overwrite (#215) (@tpoisot)
• CompatHelper: add new compat entry for Statistics at version 1 for package Fauxcurrences, (keep existing compat) (#218) (@github-actions[bot])
• CompatHelper: add new compat entry for Downloads at version 1 for package SimpleSDMDatasets, (keep existing compat) (#219) (@github-actions[bot])
• CompatHelper: add new compat entry for Statistics at version 1 for package SimpleSDMLayers, (keep existing compat) (#220) (@github-actions[bot])
• CompatHelper: bump compat for MakieCore to 0.7, (keep existing compat) (#221) (@github-actions[bot])
• Phylopic pre-compilation fix (#224) (@tpoisot)
• SurfaceLike -> GridBased (#225) (@tpoisot)
• Bug/sdt/surfacelike (#226) (@tpoisot)
• Use CRS for SimpleSDMLayers (#227) (@tpoisot)
• CompatHelper: bump compat for MakieCore to 0.8, (keep existing compat) (#229) (@github-actions[bot])
• Fauxcurrences v0.2.0 (#232) (@tpoisot)
• SimpleSDMDatasets v0.2.0 (#233) (@tpoisot)
• SimpleSDMLayers v1.0.0 (#234) (@tpoisot)
• Update TagBot.yml (#246) (@tpoisot)
• Update README.md (#247) (@tpoisot)
• CompatHelper: add new compat entry for TestItems at version 1, (keep existing compat) (#248) (@github-actions[bot])
• Github actions for documentation (#249) (@tpoisot)
• semver(datasets): v0.2.1 (#250) (@tpoisot)
• VitePress for the top level doc site (#251) (@tpoisot)
• Cleanup tutorial + howto (#253) (@tpoisot)
• Future climate tutorial update (#255) (@tpoisot)
• Restore fauxcurrence page (#256) (@tpoisot)
• Simplify the navbar (#257) (@tpoisot)
• Add interpolate! (#260) (@tpoisot)
• Add a tutorial on building the BIOCLIM model (#261) (@tpoisot)
• Bug fix: source argument missing from interpolate (#262) (@tpoisot)
• Add support to mask/reveal/hide by polygons (#263) (@tpoisot)
• CompatHelper: add new compat entry for Downloads at version 1, (keep existing compat) (#264) (@github-actions[bot])
• Additional fields to the dataset interface (#265) (@tpoisot)
• Mosaic with polygons (#266) (@tpoisot)
• New interpolate method (#268) (@tpoisot)
• Bounding box when reading is now in WGS84 (#271) (@tpoisot)
• SDeMo (#272) (@tpoisot)
• Prepare main package for SDeMo interop (#273) (@tpoisot)
• chore: prep for tag (#274) (@tpoisot)
• Update CompatHelper.yml (#275) (@tpoisot)
• Create README.md (#276) (@tpoisot)
• removing unnecessary(?) return in _write_geotiff (#277) (@gottacatchenall)
• SDeMo update (#282) (@tpoisot)
• CHELSA url changed? (#283) (@tpoisot)
• SDeMo improvements: inflated response curves, better ensemble support, decision trees (#284) (@tpoisot)
• semver(sdt): v0.1.3 (#286) (@tpoisot)
• SDeMo QoL improvements (#289) (@tpoisot)
• feat(demo): ensemble counterfactuals (#292) (@tpoisot)
• OccurrencesInterface package (#294) (@tpoisot)
• Links to all doc websites on PR (#299) (@tpoisot)
• chore(occ): LICENSE (#304) (@tpoisot)
• Doc improvements for the top-level package (#305) (@tpoisot)
• SDeMo bugfix and QOL (#306) (@tpoisot)
• Bring VIF back (#307) (@tpoisot)
• SDeMo v1.0.0 (#309) (@tpoisot)
• Fauxcurrence v1.0.0 (#315) (@tpoisot)
• GBIF v1.0.0 (#317) (@tpoisot)
• SDT v1.0.0 (#320) (@tpoisot)
• Add SDeMo compat (#321) (@tpoisot)
• Fix remaining compat entries (#322) (@tpoisot)
• Add boundingbox function (#326) (@tpoisot)
• GBIF v1.0.1 (#330) (@tpoisot)
• Update Project.toml (#331) (@tpoisot)
• Improve access to GADM (#333) (@tpoisot)
• SDeMo - selection and stratification (#334) (@tpoisot)
• Copernicus land cover data (#335) (@tpoisot)
• Release SDT to track new data version (#339) (@tpoisot)
• Update CHANGELOG.md (#340) (@tpoisot)
• Make decision tree faster / more efficient (#341) (@tpoisot)
• Masking vectors of layers (#343) (@gottacatchenall)
• Performance improvements in SDeMo (#344) (@tpoisot)
• mask(::Vector{<:SDMLayer}, polygon) dispatch fix (#345) (@gottacatchenall)
• Export interpolate! (#348) (@tpoisot)
• Balanced bootstrap in SDeMo (#349) (@tpoisot)
• Add logistic regression to SDeMo (#350) (@tpoisot)
• semver(sdt): v0.1.3 (#351) (@tpoisot)
• Additional options for logistic regression (#352) (@tpoisot)
• Fixed show method (#353) (@tpoisot)
• Add support for Clustering (#354) (@tpoisot)
• Add SpatialBoundaries support through an extension (#355) (@tpoisot)
• Safe threading in SDeMo (#359) (@tpoisot)
• Clustering quality (#360) (@tpoisot)
• DistanceToEvent performance (#361) (@tpoisot)
• Dispatch for boundingbox on vector of occurrences (#362) (@tpoisot)
• QoL improvements for SDeMo (#367) (@tpoisot)
• Add support for NeutralLandscapes (#369) (@tpoisot)
• Fix variable selection verbose output (#373) (@tpoisot)
• Support for the STAC package through an extension (#374) (@tpoisot)
• Shapley on novel data (#376) (@tpoisot)
• Use ZipArchives to get GADM data (#378) (@tpoisot)
• Use new tests + ZipArchives for SimpleSDMDatasets (#383) (@tpoisot)
• Introduces function for OSM / removes all UC Davis requests for docs (#384) (@tpoisot)
• Layers cleanup - coarsen + mvstats (#386) (@tpoisot)
• Indexing by coordinate speed-up with binary search (#388) (@gottacatchenall)
• Fix the zip file issue (#390) (@tpoisot)
• SimpleSDMLayers v1.2.1 (#391) (@tpoisot)
• SDeMo various fixes (#393) (@tpoisot)
• Improve polygon masking/simplification (#396) (@tpoisot)
• Downloader is not using the right call to downloadtype for future data (#397) (@tpoisot)
• Make logistic regression more memory efficient (#399) (@tpoisot)
• Automatically link to issues from the changelog (#403) (@tpoisot)
• PseudoAbsences.jl (#404) (@tpoisot)

Closed issues:

• Reading certain tiffs with geotiff is wrong if the CRS is not WGS84 (#32)
• Allow options to ArchGDAL driver when saving Geotiff (#30)
• ecoClimate - Climatic layers from PMIP3 CMIP5 (#33)
• Add layer description to get human-readable description of layer names (#7)
• Add a function to get the URL or reference for a data provider (#8)
• Add a way to remove observations that are documented absences (#9)
• CHELSA2 NODATA is incompatible with data type (#10)
• Move pseudo-absence code to the top-level package (#11)
• Unify distance generation in Fauxcurrences and pseudo-absence code (#12)
• Update the GBIF docstrings (#13)
• Update the model cards (#14)
• Method to get the values in a layer should be values and not collect (#16)
• Fix SimpleSDMLayers tests (#17)
• Logo (#27)
• Migrate issues about possible datasets to this repo (#28)
• Clean the code handling the CRS transformation in geotiff (#35)
• The order of arguments to read/save geotiffs make no sense (#38)
• Vignette on scaling and quantiles (#48)
• Add a method to get occurences for several taxa (#50)
• The vignettes section is getting very large (#60)
• The WorldClim tests are going to fail a lot (#61)
• Find a way to aggregate the code coverage (#62)
• Surface area of cells (#93)
• Replace data frames function by a Tables.jl interface (#94)
• Prepare repo for release of new versions (#95)
• Add Boolean operations on Boolean layers (#99)
• Link to documentation in the original repositories (#101)
• Update plotting code to work with Makie as a default (#104)
• TagBot trigger issue (#140)
• Check the weight matrices in Fauxcurrences (#142)
• Wrong coordinates returned when clipping with exact coordinates (#143)
• IO not exported? (#145)
• Split a layer into tiles (#147)
• Add a test for clipping with exact coordinates (#149)
• Avoid using stride when clipping (#150)
• Add expand options to clip (#151)
• Stitch returns the wrong bounding box in the end (#154)
• Integrate with Phylopic (#157)
• Update documentation (#158)
• geotiff driver kwarg (#160)
• downloaders break when imported as part of another module (#164)
• GBIF queries get converted (for some reason) (#165)
• Add method to download the high-res png (#171)
• Add method to generate an attribution file OR string for Phylopic (#172)
• List images by license when searching for silhouettes (#173)
• Wrong return format for names when items=1 (#174)
• Phylopic/GBIF integration (#175)
• Get the website to build for stable versions (#178)
• Using an unsupported keyword gives an error (but not the right one) (#186)
• No method for -layer (#187)
• Generate release notes that list what changes in all the packages (#189)
• Default writer should be GTiff (#190)
• Writing a layer is creating a file with no extension (#192)
• sample does not generate the expected number of background points (#194)
• cellsize returns NaN for some cells more or less at random (#198)
• Wrap MultivariateStats (#203)
• DuckDB (#205)
• Distance to observations for background points (#206)
• Check SurfaceRangeEnveloppe (#208)
• Move test to @testitem (#211)
• Array for a vector of layers is slow (#212)
• Move vignettes out of the documentation? (#213)
• Fauxcurrence overload issue (#214)
• LUH² (#217)
• CRS (#222)
• Phylopic.jl precompiles infinitely without stopping (#223)
• PaleoClim (#228)
• STAC (#230)
• Masking/segmentating layer based on vector (#231)
• Move documentation to VitePress (#245)
• Restore the Fauxcurrences tutorial (#252)
• Update the tutorial for future climate data (#254)
• Additional method to interpolate when we already have the destination layer (#258)
• Add fields to the SimpleSDMDatasets interface (#259)
• interpolate layer to same CRS/size as target layer (#267)
• zeros/ones for layers is buggy - is it maintaining everything??? (#269)
• The bounding box should be converted from WGS84 to the layer CRS (#270)
• The fscore formula is wrong (#278)
• Dispatch for Ensemble prediction is ambiguous (#279)
• Define abstract types for Bagging and Ensemble (#280)
• Add pop!, push!, etc to Ensemble (#281)
• New versions (note to self) (#285)
• SDeMo chokes on some decision trees when a single node is involved (#287)
• Add maxdepth to decision trees (#288)
• add a dispatch to the ConfusionMatrix functions (#290)
• cannot cross-validate when using the consensus argument (#293)
• data providers are flaky (#295)
• Update gameplan (#296)
• Add a "cookbook" section to the manual (#297)
• Update the PR comment issue (#298)
• Tag GBIF v1.0.0 (#301)
• Tag Fauxcurrences v1.0.0 (#302)
• Tag SpeciesDistributionToolkit v1.0.0 (#303)
• Copernicus fractional layers (#324)
• Generic function to get a bounding box in WGS84 from an arbitrary object (#325)
• Add link to the documentation (#327)
• calling a performance measure on a tuple should give a nice output (#328)
• GBIF needs patch release (#329)
• boundingbox doesn't work on a vector of Occurrence not wrapped in an Occurrences object (#336)
• Memory leak in variable selection? (#337)
• Potential performance improvement for masking a vector of polygons (#342)
• coarsen is gone (#347)
• Add support for clustering quality (#356)
• Update the clustering interface to work on a vector of layers (#357)
• Likely erroneous use of Threads.nthreads and Threads.threadid (#358)
• Add a method to save a model with logistic classifier (#363)
• Improve output for logistic models (#364)
• Use the data not part of training to measure valid. loss on Logistic (#365)
• Improve the verbose output of variable selection (#366)
• Support for NeutralLandscapes (#368)
• SDeMo doesn't load some hyper-parameters (#371)
• Number of variables reported during variable selection is wrong (#372)
• Shapley values on a layer may not work when using a different layer than was used for training (#375)
• GADM weirdness (#377)
• Use ZipArchives for raster data too (#379)
• The UC Davis toaster / server situation (#380)
• Add support for NaturalEarth polygons (#381)
• Work through documentation to remove all WorldClim and GADM calls (#382)
• Use nominatim API to get geojson directly (#385)
• Potential way to improve indexing by coordinate from O(n) to O(log(N)) (#387)
• Bug when reading zip files from SimpleSDMDatasets (#389)
• _mcsample is too restrictive about types (#392)
• PolygonOps requires that the first and last points are the same (#394)
• Mask for polygons should be threaded (#395)
• Add issue reference in the changelogs (#401)
• Split pseudo absences code (#402)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] about 1 month ago

SpeciesDistributionToolkit - SDeMo-v1.3.4

SDeMo SDeMo-v1.3.4

Diff since SDeMo-v1.3.3

Merged pull requests:

• Improve polygon masking/simplification (#396) (@tpoisot)
• Downloader is not using the right call to downloadtype for future data (#397) (@tpoisot)
• Make logistic regression more memory efficient (#399) (@tpoisot)

Closed issues:

• PolygonOps requires that the first and last points are the same (#394)
• Mask for polygons should be threaded (#395)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] about 2 months ago

SpeciesDistributionToolkit - SimpleSDMDatasets-v1.0.3

SimpleSDMDatasets SimpleSDMDatasets-v1.0.3

Diff since SimpleSDMDatasets-v1.0.2

Merged pull requests:

• SimpleSDMLayers v1.2.1 (#391) (@tpoisot)
• SDeMo various fixes (#393) (@tpoisot)
• Improve polygon masking/simplification (#396) (@tpoisot)
• Downloader is not using the right call to downloadtype for future data (#397) (@tpoisot)

Closed issues:

• SDeMo doesn't load some hyper-parameters (#371)
• _mcsample is too restrictive about types (#392)
• PolygonOps requires that the first and last points are the same (#394)
• Mask for polygons should be threaded (#395)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] about 2 months ago

SpeciesDistributionToolkit - v1.4.3

SpeciesDistributionToolkit v1.4.3

Diff since v1.4.2

Merged pull requests:

• Layers cleanup - coarsen + mvstats (#386) (@tpoisot)
• Indexing by coordinate speed-up with binary search (#388) (@gottacatchenall)
• Fix the zip file issue (#390) (@tpoisot)
• SimpleSDMLayers v1.2.1 (#391) (@tpoisot)
• SDeMo various fixes (#393) (@tpoisot)
• Improve polygon masking/simplification (#396) (@tpoisot)

Closed issues:

• Wrap MultivariateStats (#203)
• Add a "cookbook" section to the manual (#297)
• coarsen is gone (#347)
• SDeMo doesn't load some hyper-parameters (#371)
• Potential way to improve indexing by coordinate from O(n) to O(log(N)) (#387)
• Bug when reading zip files from SimpleSDMDatasets (#389)
• _mcsample is too restrictive about types (#392)
• PolygonOps requires that the first and last points are the same (#394)
• Mask for polygons should be threaded (#395)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] about 2 months ago

SpeciesDistributionToolkit - SDeMo-v1.3.3

SDeMo SDeMo-v1.3.3

Diff since SDeMo-v1.3.2

Merged pull requests:

• Use new tests + ZipArchives for SimpleSDMDatasets (#383) (@tpoisot)
• Introduces function for OSM / removes all UC Davis requests for docs (#384) (@tpoisot)
• Layers cleanup - coarsen + mvstats (#386) (@tpoisot)
• Indexing by coordinate speed-up with binary search (#388) (@gottacatchenall)
• Fix the zip file issue (#390) (@tpoisot)
• SimpleSDMLayers v1.2.1 (#391) (@tpoisot)
• SDeMo various fixes (#393) (@tpoisot)

Closed issues:

• Wrap MultivariateStats (#203)
• Add a "cookbook" section to the manual (#297)
• coarsen is gone (#347)
• SDeMo doesn't load some hyper-parameters (#371)
• Use ZipArchives for raster data too (#379)
• The UC Davis toaster / server situation (#380)
• Add support for NaturalEarth polygons (#381)
• Work through documentation to remove all WorldClim and GADM calls (#382)
• Use nominatim API to get geojson directly (#385)
• Potential way to improve indexing by coordinate from O(n) to O(log(N)) (#387)
• Bug when reading zip files from SimpleSDMDatasets (#389)
• _mcsample is too restrictive about types (#392)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] about 2 months ago

SpeciesDistributionToolkit - SimpleSDMLayers-v1.2.1

SimpleSDMLayers SimpleSDMLayers-v1.2.1

Diff since SimpleSDMLayers-v1.1.1

Merged pull requests:

• DistanceToEvent performance (#361) (@tpoisot)
• Dispatch for boundingbox on vector of occurrences (#362) (@tpoisot)
• QoL improvements for SDeMo (#367) (@tpoisot)
• Add support for NeutralLandscapes (#369) (@tpoisot)
• Fix variable selection verbose output (#373) (@tpoisot)
• Support for the STAC package through an extension (#374) (@tpoisot)
• Shapley on novel data (#376) (@tpoisot)
• Use ZipArchives to get GADM data (#378) (@tpoisot)
• Use new tests + ZipArchives for SimpleSDMDatasets (#383) (@tpoisot)
• Introduces function for OSM / removes all UC Davis requests for docs (#384) (@tpoisot)
• Layers cleanup - coarsen + mvstats (#386) (@tpoisot)
• Indexing by coordinate speed-up with binary search (#388) (@gottacatchenall)
• Fix the zip file issue (#390) (@tpoisot)
• SimpleSDMLayers v1.2.1 (#391) (@tpoisot)

Closed issues:

• Wrap MultivariateStats (#203)
• STAC (#230)
• Add a "cookbook" section to the manual (#297)
• calling a performance measure on a tuple should give a nice output (#328)
• boundingbox doesn't work on a vector of Occurrence not wrapped in an Occurrences object (#336)
• coarsen is gone (#347)
• Add a method to save a model with logistic classifier (#363)
• Improve output for logistic models (#364)
• Use the data not part of training to measure valid. loss on Logistic (#365)
• Improve the verbose output of variable selection (#366)
• Support for NeutralLandscapes (#368)
• Number of variables reported during variable selection is wrong (#372)
• Shapley values on a layer may not work when using a different layer than was used for training (#375)
• GADM weirdness (#377)
• Use ZipArchives for raster data too (#379)
• The UC Davis toaster / server situation (#380)
• Add support for NaturalEarth polygons (#381)
• Work through documentation to remove all WorldClim and GADM calls (#382)
• Use nominatim API to get geojson directly (#385)
• Potential way to improve indexing by coordinate from O(n) to O(log(N)) (#387)
• Bug when reading zip files from SimpleSDMDatasets (#389)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] about 2 months ago

SpeciesDistributionToolkit - SimpleSDMDatasets-v1.0.2

SimpleSDMDatasets SimpleSDMDatasets-v1.0.2

Diff since SimpleSDMDatasets-v1.0.1

Merged pull requests:

• Introduces function for OSM / removes all UC Davis requests for docs (#384) (@tpoisot)
• Layers cleanup - coarsen + mvstats (#386) (@tpoisot)
• Indexing by coordinate speed-up with binary search (#388) (@gottacatchenall)
• Fix the zip file issue (#390) (@tpoisot)

Closed issues:

• Wrap MultivariateStats (#203)
• Add a "cookbook" section to the manual (#297)
• coarsen is gone (#347)
• The UC Davis toaster / server situation (#380)
• Add support for NaturalEarth polygons (#381)
• Work through documentation to remove all WorldClim and GADM calls (#382)
• Use nominatim API to get geojson directly (#385)
• Potential way to improve indexing by coordinate from O(n) to O(log(N)) (#387)
• Bug when reading zip files from SimpleSDMDatasets (#389)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] about 2 months ago

SpeciesDistributionToolkit - v1.4.2

SpeciesDistributionToolkit v1.4.2

Diff since v1.4.1

Merged pull requests:

• Shapley on novel data (#376) (@tpoisot)
• Use new tests + ZipArchives for SimpleSDMDatasets (#383) (@tpoisot)
• Introduces function for OSM / removes all UC Davis requests for docs (#384) (@tpoisot)

Closed issues:

• Shapley values on a layer may not work when using a different layer than was used for training (#375)
• Use ZipArchives for raster data too (#379)
• The UC Davis toaster / server situation (#380)
• Add support for NaturalEarth polygons (#381)
• Work through documentation to remove all WorldClim and GADM calls (#382)
• Use nominatim API to get geojson directly (#385)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] about 2 months ago

SpeciesDistributionToolkit - SimpleSDMDatasets-v1.0.1

SimpleSDMDatasets SimpleSDMDatasets-v1.0.1

Diff since SimpleSDMDatasets-v1.0.0

Merged pull requests:

• Release SDT to track new data version (#339) (@tpoisot)
• Update CHANGELOG.md (#340) (@tpoisot)
• Make decision tree faster / more efficient (#341) (@tpoisot)
• Masking vectors of layers (#343) (@gottacatchenall)
• Performance improvements in SDeMo (#344) (@tpoisot)
• mask(::Vector{<:SDMLayer}, polygon) dispatch fix (#345) (@gottacatchenall)
• Export interpolate! (#348) (@tpoisot)
• Balanced bootstrap in SDeMo (#349) (@tpoisot)
• Add logistic regression to SDeMo (#350) (@tpoisot)
• semver(sdt): v0.1.3 (#351) (@tpoisot)
• Additional options for logistic regression (#352) (@tpoisot)
• Fixed show method (#353) (@tpoisot)
• Add support for Clustering (#354) (@tpoisot)
• Add SpatialBoundaries support through an extension (#355) (@tpoisot)
• Safe threading in SDeMo (#359) (@tpoisot)
• Clustering quality (#360) (@tpoisot)
• DistanceToEvent performance (#361) (@tpoisot)
• Dispatch for boundingbox on vector of occurrences (#362) (@tpoisot)
• QoL improvements for SDeMo (#367) (@tpoisot)
• Add support for NeutralLandscapes (#369) (@tpoisot)
• Fix variable selection verbose output (#373) (@tpoisot)
• Support for the STAC package through an extension (#374) (@tpoisot)
• Shapley on novel data (#376) (@tpoisot)
• Use ZipArchives to get GADM data (#378) (@tpoisot)
• Use new tests + ZipArchives for SimpleSDMDatasets (#383) (@tpoisot)

Closed issues:

• STAC (#230)
• calling a performance measure on a tuple should give a nice output (#328)
• boundingbox doesn't work on a vector of Occurrence not wrapped in an Occurrences object (#336)
• Memory leak in variable selection? (#337)
• Potential performance improvement for masking a vector of polygons (#342)
• Add support for clustering quality (#356)
• Update the clustering interface to work on a vector of layers (#357)
• Likely erroneous use of Threads.nthreads and Threads.threadid (#358)
• Add a method to save a model with logistic classifier (#363)
• Improve output for logistic models (#364)
• Use the data not part of training to measure valid. loss on Logistic (#365)
• Improve the verbose output of variable selection (#366)
• Support for NeutralLandscapes (#368)
• Number of variables reported during variable selection is wrong (#372)
• Shapley values on a layer may not work when using a different layer than was used for training (#375)
• GADM weirdness (#377)
• Use ZipArchives for raster data too (#379)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] about 2 months ago

SpeciesDistributionToolkit - SDeMo-v1.3.2

SDeMo SDeMo-v1.3.2

Diff since SDeMo-v1.3.1

Merged pull requests:

• Support for the STAC package through an extension (#374) (@tpoisot)
• Shapley on novel data (#376) (@tpoisot)
• Use ZipArchives to get GADM data (#378) (@tpoisot)

Closed issues:

• STAC (#230)
• Shapley values on a layer may not work when using a different layer than was used for training (#375)
• GADM weirdness (#377)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] about 2 months ago

SpeciesDistributionToolkit - v1.4.1

SpeciesDistributionToolkit v1.4.1

Diff since v1.4.0

Merged pull requests:

• Use ZipArchives to get GADM data (#378) (@tpoisot)

Closed issues:

• GADM weirdness (#377)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] about 2 months ago

SpeciesDistributionToolkit - v1.4.0

SpeciesDistributionToolkit v1.4.0

Diff since v1.3.2

Merged pull requests:

• QoL improvements for SDeMo (#367) (@tpoisot)
• Add support for NeutralLandscapes (#369) (@tpoisot)
• Fix variable selection verbose output (#373) (@tpoisot)
• Support for the STAC package through an extension (#374) (@tpoisot)

Closed issues:

• STAC (#230)
• Add a method to save a model with logistic classifier (#363)
• Improve output for logistic models (#364)
• Use the data not part of training to measure valid. loss on Logistic (#365)
• Improve the verbose output of variable selection (#366)
• Support for NeutralLandscapes (#368)
• Number of variables reported during variable selection is wrong (#372)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] about 2 months ago

SpeciesDistributionToolkit - SDeMo-v1.3.1

SDeMo SDeMo-v1.3.1

Diff since SDeMo-v1.3.0

Merged pull requests:

• Fix variable selection verbose output (#373) (@tpoisot)

Closed issues:

• Number of variables reported during variable selection is wrong (#372)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] about 2 months ago

SpeciesDistributionToolkit - SDeMo-v1.3.0

SDeMo SDeMo-v1.3.0

Diff since SDeMo-v1.2.3

Merged pull requests:

• Clustering quality (#360) (@tpoisot)
• DistanceToEvent performance (#361) (@tpoisot)
• Dispatch for boundingbox on vector of occurrences (#362) (@tpoisot)
• QoL improvements for SDeMo (#367) (@tpoisot)
• Add support for NeutralLandscapes (#369) (@tpoisot)

Closed issues:

• calling a performance measure on a tuple should give a nice output (#328)
• boundingbox doesn't work on a vector of Occurrence not wrapped in an Occurrences object (#336)
• Add support for clustering quality (#356)
• Update the clustering interface to work on a vector of layers (#357)
• Add a method to save a model with logistic classifier (#363)
• Improve output for logistic models (#364)
• Use the data not part of training to measure valid. loss on Logistic (#365)
• Improve the verbose output of variable selection (#366)
• Support for NeutralLandscapes (#368)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] about 2 months ago

SpeciesDistributionToolkit - v1.3.2

SpeciesDistributionToolkit v1.3.2

Diff since v1.3.1

Merged pull requests:

• Dispatch for boundingbox on vector of occurrences (#362) (@tpoisot)

Closed issues:

• calling a performance measure on a tuple should give a nice output (#328)
• boundingbox doesn't work on a vector of Occurrence not wrapped in an Occurrences object (#336)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 2 months ago

SpeciesDistributionToolkit - v1.3.1

SpeciesDistributionToolkit v1.3.1

Diff since v1.3.0

Merged pull requests:

• Safe threading in SDeMo (#359) (@tpoisot)
• Clustering quality (#360) (@tpoisot)
• DistanceToEvent performance (#361) (@tpoisot)

Closed issues:

• Add support for clustering quality (#356)
• Update the clustering interface to work on a vector of layers (#357)
• Likely erroneous use of Threads.nthreads and Threads.threadid (#358)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 2 months ago

SpeciesDistributionToolkit - SimpleSDMLayers-v1.1.1

SimpleSDMLayers SimpleSDMLayers-v1.1.1

Diff since SimpleSDMLayers-v1.1.0

Merged pull requests:

• Add SpatialBoundaries support through an extension (#355) (@tpoisot)
• Safe threading in SDeMo (#359) (@tpoisot)
• Clustering quality (#360) (@tpoisot)

Closed issues:

• Add support for clustering quality (#356)
• Update the clustering interface to work on a vector of layers (#357)
• Likely erroneous use of Threads.nthreads and Threads.threadid (#358)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 2 months ago

SpeciesDistributionToolkit - SDeMo-v1.2.3

SDeMo SDeMo-v1.2.3

Diff since SDeMo-v1.2.2

Merged pull requests:

• Fixed show method (#353) (@tpoisot)
• Add support for Clustering (#354) (@tpoisot)
• Add SpatialBoundaries support through an extension (#355) (@tpoisot)
• Safe threading in SDeMo (#359) (@tpoisot)

Closed issues:

• Likely erroneous use of Threads.nthreads and Threads.threadid (#358)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 2 months ago

SpeciesDistributionToolkit - v1.3.0

SpeciesDistributionToolkit v1.3.0

Diff since v1.2.3

Merged pull requests:

• Additional options for logistic regression (#352) (@tpoisot)
• Fixed show method (#353) (@tpoisot)
• Add support for Clustering (#354) (@tpoisot)
• Add SpatialBoundaries support through an extension (#355) (@tpoisot)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 2 months ago

SpeciesDistributionToolkit - SimpleSDMLayers-v1.1.0

SimpleSDMLayers SimpleSDMLayers-v1.1.0

Diff since SimpleSDMLayers-v1.0.7

Merged pull requests:

• Add support for Clustering (#354) (@tpoisot)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 2 months ago

SpeciesDistributionToolkit - SimpleSDMLayers-v1.0.7

SimpleSDMLayers SimpleSDMLayers-v1.0.7

Diff since SimpleSDMLayers-v1.0.6

Merged pull requests:

• Balanced bootstrap in SDeMo (#349) (@tpoisot)
• Add logistic regression to SDeMo (#350) (@tpoisot)
• semver(sdt): v0.1.3 (#351) (@tpoisot)
• Additional options for logistic regression (#352) (@tpoisot)
• Fixed show method (#353) (@tpoisot)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 2 months ago

SpeciesDistributionToolkit - SDeMo-v1.2.2

SDeMo SDeMo-v1.2.2

Diff since SDeMo-v1.2.1

Merged pull requests:

• semver(sdt): v0.1.3 (#351) (@tpoisot)
• Additional options for logistic regression (#352) (@tpoisot)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 2 months ago

SpeciesDistributionToolkit - v1.2.3

SpeciesDistributionToolkit v1.2.3

Diff since v1.2.2

Merged pull requests:

• Performance improvements in SDeMo (#344) (@tpoisot)
• Export interpolate! (#348) (@tpoisot)
• Balanced bootstrap in SDeMo (#349) (@tpoisot)
• Add logistic regression to SDeMo (#350) (@tpoisot)
• semver(sdt): v0.1.3 (#351) (@tpoisot)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 2 months ago

SpeciesDistributionToolkit - SDeMo-v1.2.1

SDeMo SDeMo-v1.2.1

Diff since SDeMo-v1.2.0

Merged pull requests:

• Add logistic regression to SDeMo (#350) (@tpoisot)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 2 months ago

SpeciesDistributionToolkit - SDeMo-v1.2.0

SDeMo SDeMo-v1.2.0

Diff since SDeMo-v1.1.2

Merged pull requests:

• Export interpolate! (#348) (@tpoisot)
• Balanced bootstrap in SDeMo (#349) (@tpoisot)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 2 months ago

SpeciesDistributionToolkit - SimpleSDMLayers-v1.0.6

SimpleSDMLayers SimpleSDMLayers-v1.0.6

Diff since SimpleSDMLayers-v1.0.5

Merged pull requests:

• Prepare main package for SDeMo interop (#273) (@tpoisot)
• SDeMo update (#282) (@tpoisot)
• CHELSA url changed? (#283) (@tpoisot)
• SDeMo improvements: inflated response curves, better ensemble support, decision trees (#284) (@tpoisot)
• semver(sdt): v0.1.3 (#286) (@tpoisot)
• SDeMo QoL improvements (#289) (@tpoisot)
• feat(demo): ensemble counterfactuals (#292) (@tpoisot)
• OccurrencesInterface package (#294) (@tpoisot)
• Links to all doc websites on PR (#299) (@tpoisot)
• chore(occ): LICENSE (#304) (@tpoisot)
• Doc improvements for the top-level package (#305) (@tpoisot)
• SDeMo bugfix and QOL (#306) (@tpoisot)
• Bring VIF back (#307) (@tpoisot)
• SDeMo v1.0.0 (#309) (@tpoisot)
• Fauxcurrence v1.0.0 (#315) (@tpoisot)
• GBIF v1.0.0 (#317) (@tpoisot)
• SDT v1.0.0 (#320) (@tpoisot)
• Add SDeMo compat (#321) (@tpoisot)
• Fix remaining compat entries (#322) (@tpoisot)
• Add boundingbox function (#326) (@tpoisot)
• GBIF v1.0.1 (#330) (@tpoisot)
• Update Project.toml (#331) (@tpoisot)
• Improve access to GADM (#333) (@tpoisot)
• SDeMo - selection and stratification (#334) (@tpoisot)
• Copernicus land cover data (#335) (@tpoisot)
• Release SDT to track new data version (#339) (@tpoisot)
• Update CHANGELOG.md (#340) (@tpoisot)
• Make decision tree faster / more efficient (#341) (@tpoisot)
• Masking vectors of layers (#343) (@gottacatchenall)
• Performance improvements in SDeMo (#344) (@tpoisot)
• mask(::Vector{<:SDMLayer}, polygon) dispatch fix (#345) (@gottacatchenall)
• Export interpolate! (#348) (@tpoisot)

Closed issues:

• DuckDB (#205)
• Move test to @testitem (#211)
• The fscore formula is wrong (#278)
• Dispatch for Ensemble prediction is ambiguous (#279)
• Define abstract types for Bagging and Ensemble (#280)
• Add pop!, push!, etc to Ensemble (#281)
• New versions (note to self) (#285)
• SDeMo chokes on some decision trees when a single node is involved (#287)
• Add maxdepth to decision trees (#288)
• add a dispatch to the ConfusionMatrix functions (#290)
• cannot cross-validate when using the consensus argument (#293)
• data providers are flaky (#295)
• Update gameplan (#296)
• Update the PR comment issue (#298)
• Tag GBIF v1.0.0 (#301)
• Tag Fauxcurrences v1.0.0 (#302)
• Tag SpeciesDistributionToolkit v1.0.0 (#303)
• Copernicus fractional layers (#324)
• Generic function to get a bounding box in WGS84 from an arbitrary object (#325)
• Add link to the documentation (#327)
• GBIF needs patch release (#329)
• Memory leak in variable selection? (#337)
• Potential performance improvement for masking a vector of polygons (#342)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 3 months ago

SpeciesDistributionToolkit - SDeMo-v1.1.2

SDeMo SDeMo-v1.1.2

Diff since SDeMo-v1.1.1

Merged pull requests:

• Masking vectors of layers (#343) (@gottacatchenall)
• Performance improvements in SDeMo (#344) (@tpoisot)
• mask(::Vector{<:SDMLayer}, polygon) dispatch fix (#345) (@gottacatchenall)

Closed issues:

• Potential performance improvement for masking a vector of polygons (#342)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 3 months ago

SpeciesDistributionToolkit - v1.2.2

SpeciesDistributionToolkit v1.2.2

Diff since v1.2.1

Merged pull requests:

• mask(::Vector{<:SDMLayer}, polygon) dispatch fix (#345) (@gottacatchenall)

Closed issues:

• Potential performance improvement for masking a vector of polygons (#342)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 3 months ago

SpeciesDistributionToolkit - v1.2.1

SpeciesDistributionToolkit v1.2.1

Diff since v1.2.0

Merged pull requests:

• Make decision tree faster / more efficient (#341) (@tpoisot)
• Masking vectors of layers (#343) (@gottacatchenall)

Closed issues:

• Memory leak in variable selection? (#337)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 4 months ago

SpeciesDistributionToolkit - SDeMo-v1.1.1

SDeMo SDeMo-v1.1.1

Diff since SDeMo-v1.1.0

Merged pull requests:

• Copernicus land cover data (#335) (@tpoisot)
• Release SDT to track new data version (#339) (@tpoisot)
• Update CHANGELOG.md (#340) (@tpoisot)
• Make decision tree faster / more efficient (#341) (@tpoisot)

Closed issues:

• Copernicus fractional layers (#324)
• Add link to the documentation (#327)
• Memory leak in variable selection? (#337)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 5 months ago

SpeciesDistributionToolkit - v1.2.0

SpeciesDistributionToolkit v1.2.0

Diff since v1.1.1

Merged pull requests:

• SDeMo - selection and stratification (#334) (@tpoisot)
• Copernicus land cover data (#335) (@tpoisot)
• Release SDT to track new data version (#339) (@tpoisot)
• Update CHANGELOG.md (#340) (@tpoisot)

Closed issues:

• Copernicus fractional layers (#324)
• Add link to the documentation (#327)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 5 months ago

SpeciesDistributionToolkit - SimpleSDMDatasets-v1.0.0

SimpleSDMDatasets SimpleSDMDatasets-v1.0.0

Diff since SimpleSDMDatasets-v0.2.3

Merged pull requests:

• Prepare main package for SDeMo interop (#273) (@tpoisot)
• SDeMo improvements: inflated response curves, better ensemble support, decision trees (#284) (@tpoisot)
• semver(sdt): v0.1.3 (#286) (@tpoisot)
• SDeMo QoL improvements (#289) (@tpoisot)
• feat(demo): ensemble counterfactuals (#292) (@tpoisot)
• OccurrencesInterface package (#294) (@tpoisot)
• Links to all doc websites on PR (#299) (@tpoisot)
• chore(occ): LICENSE (#304) (@tpoisot)
• Doc improvements for the top-level package (#305) (@tpoisot)
• SDeMo bugfix and QOL (#306) (@tpoisot)
• Bring VIF back (#307) (@tpoisot)
• SDeMo v1.0.0 (#309) (@tpoisot)
• Fauxcurrence v1.0.0 (#315) (@tpoisot)
• GBIF v1.0.0 (#317) (@tpoisot)
• SDT v1.0.0 (#320) (@tpoisot)
• Add SDeMo compat (#321) (@tpoisot)
• Fix remaining compat entries (#322) (@tpoisot)
• Add boundingbox function (#326) (@tpoisot)
• GBIF v1.0.1 (#330) (@tpoisot)
• Update Project.toml (#331) (@tpoisot)
• Improve access to GADM (#333) (@tpoisot)
• SDeMo - selection and stratification (#334) (@tpoisot)
• Copernicus land cover data (#335) (@tpoisot)

Closed issues:

• DuckDB (#205)
• Move test to @testitem (#211)
• New versions (note to self) (#285)
• SDeMo chokes on some decision trees when a single node is involved (#287)
• Add maxdepth to decision trees (#288)
• add a dispatch to the ConfusionMatrix functions (#290)
• cannot cross-validate when using the consensus argument (#293)
• data providers are flaky (#295)
• Update gameplan (#296)
• Update the PR comment issue (#298)
• Tag GBIF v1.0.0 (#301)
• Tag Fauxcurrences v1.0.0 (#302)
• Tag SpeciesDistributionToolkit v1.0.0 (#303)
• Copernicus fractional layers (#324)
• Generic function to get a bounding box in WGS84 from an arbitrary object (#325)
• Add link to the documentation (#327)
• GBIF needs patch release (#329)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 5 months ago

SpeciesDistributionToolkit - SDeMo-v1.1.0

SDeMo SDeMo-v1.1.0

Diff since SDeMo-v1.0.0

Merged pull requests:

• SDT v1.0.0 (#320) (@tpoisot)
• Add SDeMo compat (#321) (@tpoisot)
• Fix remaining compat entries (#322) (@tpoisot)
• Add boundingbox function (#326) (@tpoisot)
• GBIF v1.0.1 (#330) (@tpoisot)
• Update Project.toml (#331) (@tpoisot)
• Improve access to GADM (#333) (@tpoisot)
• SDeMo - selection and stratification (#334) (@tpoisot)

Closed issues:

• Update gameplan (#296)
• Tag SpeciesDistributionToolkit v1.0.0 (#303)
• Generic function to get a bounding box in WGS84 from an arbitrary object (#325)
• GBIF needs patch release (#329)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 5 months ago

SpeciesDistributionToolkit - v1.1.1

SpeciesDistributionToolkit v1.1.1

Diff since v1.1.0

Merged pull requests:

• GBIF v1.0.1 (#330) (@tpoisot)
• Update Project.toml (#331) (@tpoisot)
• Improve access to GADM (#333) (@tpoisot)

Closed issues:

• GBIF needs patch release (#329)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 5 months ago

SpeciesDistributionToolkit - GBIF-v1.0.1

GBIF GBIF-v1.0.1

Diff since GBIF-v1.0.0

Merged pull requests:

• SDeMo v1.0.0 (#309) (@tpoisot)
• SDT v1.0.0 (#320) (@tpoisot)
• Add SDeMo compat (#321) (@tpoisot)
• Fix remaining compat entries (#322) (@tpoisot)
• Add boundingbox function (#326) (@tpoisot)
• GBIF v1.0.1 (#330) (@tpoisot)
• Update Project.toml (#331) (@tpoisot)

Closed issues:

• Update gameplan (#296)
• Tag SpeciesDistributionToolkit v1.0.0 (#303)
• Generic function to get a bounding box in WGS84 from an arbitrary object (#325)
• GBIF needs patch release (#329)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 5 months ago

SpeciesDistributionToolkit - v1.1.0

SpeciesDistributionToolkit v1.1.0

Diff since v1.0.0

Merged pull requests:

• Add boundingbox function (#326) (@tpoisot)

Closed issues:

• Generic function to get a bounding box in WGS84 from an arbitrary object (#325)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 5 months ago

SpeciesDistributionToolkit - v1.0.0

SpeciesDistributionToolkit v1.0.0

Diff since v0.1.3

Merged pull requests:

• SDeMo QoL improvements (#289) (@tpoisot)
• feat(demo): ensemble counterfactuals (#292) (@tpoisot)
• OccurrencesInterface package (#294) (@tpoisot)
• Links to all doc websites on PR (#299) (@tpoisot)
• chore(occ): LICENSE (#304) (@tpoisot)
• Doc improvements for the top-level package (#305) (@tpoisot)
• SDeMo bugfix and QOL (#306) (@tpoisot)
• Bring VIF back (#307) (@tpoisot)
• SDeMo v1.0.0 (#309) (@tpoisot)
• Fauxcurrence v1.0.0 (#315) (@tpoisot)
• GBIF v1.0.0 (#317) (@tpoisot)
• SDT v1.0.0 (#320) (@tpoisot)
• Add SDeMo compat (#321) (@tpoisot)
• Fix remaining compat entries (#322) (@tpoisot)

Closed issues:

• DuckDB (#205)
• Move test to @testitem (#211)
• SDeMo chokes on some decision trees when a single node is involved (#287)
• Add maxdepth to decision trees (#288)
• add a dispatch to the ConfusionMatrix functions (#290)
• cannot cross-validate when using the consensus argument (#293)
• data providers are flaky (#295)
• Update gameplan (#296)
• Update the PR comment issue (#298)
• Tag GBIF v1.0.0 (#301)
• Tag Fauxcurrences v1.0.0 (#302)
• Tag SpeciesDistributionToolkit v1.0.0 (#303)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 6 months ago

SpeciesDistributionToolkit - SDeMo-v1.0.0

SDeMo SDeMo-v1.0.0

Diff since SDeMo-v0.0.7

Merged pull requests:

• Doc improvements for the top-level package (#305) (@tpoisot)
• SDeMo v1.0.0 (#309) (@tpoisot)
• Fauxcurrence v1.0.0 (#315) (@tpoisot)
• GBIF v1.0.0 (#317) (@tpoisot)

Closed issues:

• data providers are flaky (#295)
• Tag GBIF v1.0.0 (#301)
• Tag Fauxcurrences v1.0.0 (#302)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 6 months ago

SpeciesDistributionToolkit - GBIF-v1.0.0

GBIF GBIF-v1.0.0

Diff since GBIF-v0.4.5

Merged pull requests:

• Use CRS for SimpleSDMLayers (#227) (@tpoisot)
• CompatHelper: bump compat for MakieCore to 0.8, (keep existing compat) (#229) (@github-actions[bot])
• Fauxcurrences v0.2.0 (#232) (@tpoisot)
• SimpleSDMDatasets v0.2.0 (#233) (@tpoisot)
• SimpleSDMLayers v1.0.0 (#234) (@tpoisot)
• Update TagBot.yml (#246) (@tpoisot)
• Update README.md (#247) (@tpoisot)
• CompatHelper: add new compat entry for TestItems at version 1, (keep existing compat) (#248) (@github-actions[bot])
• Github actions for documentation (#249) (@tpoisot)
• semver(datasets): v0.2.1 (#250) (@tpoisot)
• VitePress for the top level doc site (#251) (@tpoisot)
• Cleanup tutorial + howto (#253) (@tpoisot)
• Future climate tutorial update (#255) (@tpoisot)
• Restore fauxcurrence page (#256) (@tpoisot)
• Simplify the navbar (#257) (@tpoisot)
• Add interpolate! (#260) (@tpoisot)
• Add a tutorial on building the BIOCLIM model (#261) (@tpoisot)
• Bug fix: source argument missing from interpolate (#262) (@tpoisot)
• Add support to mask/reveal/hide by polygons (#263) (@tpoisot)
• CompatHelper: add new compat entry for Downloads at version 1, (keep existing compat) (#264) (@github-actions[bot])
• Additional fields to the dataset interface (#265) (@tpoisot)
• Mosaic with polygons (#266) (@tpoisot)
• New interpolate method (#268) (@tpoisot)
• Bounding box when reading is now in WGS84 (#271) (@tpoisot)
• SDeMo (#272) (@tpoisot)
• Prepare main package for SDeMo interop (#273) (@tpoisot)
• chore: prep for tag (#274) (@tpoisot)
• Update CompatHelper.yml (#275) (@tpoisot)
• Create README.md (#276) (@tpoisot)
• removing unnecessary(?) return in _write_geotiff (#277) (@gottacatchenall)
• SDeMo update (#282) (@tpoisot)
• CHELSA url changed? (#283) (@tpoisot)
• SDeMo improvements: inflated response curves, better ensemble support, decision trees (#284) (@tpoisot)
• semver(sdt): v0.1.3 (#286) (@tpoisot)
• SDeMo QoL improvements (#289) (@tpoisot)
• feat(demo): ensemble counterfactuals (#292) (@tpoisot)
• OccurrencesInterface package (#294) (@tpoisot)
• Links to all doc websites on PR (#299) (@tpoisot)
• chore(occ): LICENSE (#304) (@tpoisot)
• Doc improvements for the top-level package (#305) (@tpoisot)
• SDeMo bugfix and QOL (#306) (@tpoisot)
• Bring VIF back (#307) (@tpoisot)
• Fauxcurrence v1.0.0 (#315) (@tpoisot)
• GBIF v1.0.0 (#317) (@tpoisot)

Closed issues:

• ecoClimate - Climatic layers from PMIP3 CMIP5 (#33)
• Logo (#27)
• Generate release notes that list what changes in all the packages (#189)
• DuckDB (#205)
• Move test to @testitem (#211)
• Move vignettes out of the documentation? (#213)
• LUH² (#217)
• PaleoClim (#228)
• Masking/segmentating layer based on vector (#231)
• Move documentation to VitePress (#245)
• Restore the Fauxcurrences tutorial (#252)
• Update the tutorial for future climate data (#254)
• Additional method to interpolate when we already have the destination layer (#258)
• Add fields to the SimpleSDMDatasets interface (#259)
• interpolate layer to same CRS/size as target layer (#267)
• zeros/ones for layers is buggy - is it maintaining everything??? (#269)
• The bounding box should be converted from WGS84 to the layer CRS (#270)
• The fscore formula is wrong (#278)
• Dispatch for Ensemble prediction is ambiguous (#279)
• Define abstract types for Bagging and Ensemble (#280)
• Add pop!, push!, etc to Ensemble (#281)
• New versions (note to self) (#285)
• SDeMo chokes on some decision trees when a single node is involved (#287)
• Add maxdepth to decision trees (#288)
• add a dispatch to the ConfusionMatrix functions (#290)
• cannot cross-validate when using the consensus argument (#293)
• data providers are flaky (#295)
• Update the PR comment issue (#298)
• Tag GBIF v1.0.0 (#301)
• Tag Fauxcurrences v1.0.0 (#302)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 6 months ago

SpeciesDistributionToolkit - Fauxcurrences-v1.0.0

Fauxcurrences Fauxcurrences-v1.0.0

Diff since Fauxcurrences-v0.2.0

Merged pull requests:

• CompatHelper: add new compat entry for TestItems at version 1, (keep existing compat) (#248) (@github-actions[bot])
• Github actions for documentation (#249) (@tpoisot)
• semver(datasets): v0.2.1 (#250) (@tpoisot)
• VitePress for the top level doc site (#251) (@tpoisot)
• Cleanup tutorial + howto (#253) (@tpoisot)
• Future climate tutorial update (#255) (@tpoisot)
• Restore fauxcurrence page (#256) (@tpoisot)
• Simplify the navbar (#257) (@tpoisot)
• Add interpolate! (#260) (@tpoisot)
• Add a tutorial on building the BIOCLIM model (#261) (@tpoisot)
• Bug fix: source argument missing from interpolate (#262) (@tpoisot)
• Add support to mask/reveal/hide by polygons (#263) (@tpoisot)
• CompatHelper: add new compat entry for Downloads at version 1, (keep existing compat) (#264) (@github-actions[bot])
• Additional fields to the dataset interface (#265) (@tpoisot)
• Mosaic with polygons (#266) (@tpoisot)
• New interpolate method (#268) (@tpoisot)
• Bounding box when reading is now in WGS84 (#271) (@tpoisot)
• SDeMo (#272) (@tpoisot)
• Prepare main package for SDeMo interop (#273) (@tpoisot)
• chore: prep for tag (#274) (@tpoisot)
• Update CompatHelper.yml (#275) (@tpoisot)
• Create README.md (#276) (@tpoisot)
• removing unnecessary(?) return in _write_geotiff (#277) (@gottacatchenall)
• SDeMo update (#282) (@tpoisot)
• CHELSA url changed? (#283) (@tpoisot)
• SDeMo improvements: inflated response curves, better ensemble support, decision trees (#284) (@tpoisot)
• semver(sdt): v0.1.3 (#286) (@tpoisot)
• SDeMo QoL improvements (#289) (@tpoisot)
• feat(demo): ensemble counterfactuals (#292) (@tpoisot)
• OccurrencesInterface package (#294) (@tpoisot)
• Links to all doc websites on PR (#299) (@tpoisot)
• chore(occ): LICENSE (#304) (@tpoisot)
• Doc improvements for the top-level package (#305) (@tpoisot)
• SDeMo bugfix and QOL (#306) (@tpoisot)
• Bring VIF back (#307) (@tpoisot)
• Fauxcurrence v1.0.0 (#315) (@tpoisot)

Closed issues:

• DuckDB (#205)
• Move test to @testitem (#211)
• LUH² (#217)
• Masking/segmentating layer based on vector (#231)
• Move documentation to VitePress (#245)
• Restore the Fauxcurrences tutorial (#252)
• Update the tutorial for future climate data (#254)
• Additional method to interpolate when we already have the destination layer (#258)
• Add fields to the SimpleSDMDatasets interface (#259)
• interpolate layer to same CRS/size as target layer (#267)
• zeros/ones for layers is buggy - is it maintaining everything??? (#269)
• The bounding box should be converted from WGS84 to the layer CRS (#270)
• The fscore formula is wrong (#278)
• Dispatch for Ensemble prediction is ambiguous (#279)
• Define abstract types for Bagging and Ensemble (#280)
• Add pop!, push!, etc to Ensemble (#281)
• New versions (note to self) (#285)
• SDeMo chokes on some decision trees when a single node is involved (#287)
• Add maxdepth to decision trees (#288)
• add a dispatch to the ConfusionMatrix functions (#290)
• cannot cross-validate when using the consensus argument (#293)
• data providers are flaky (#295)
• Update the PR comment issue (#298)
• Tag Fauxcurrences v1.0.0 (#302)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 6 months ago

SpeciesDistributionToolkit - OccurrencesInterface-v1.0.0

OccurrencesInterface OccurrencesInterface-v1.0.0

Merged pull requests:

• CompatHelper: add new compat entry for Reexport at version 1, (keep existing compat) (#3) (@github-actions[bot])
• Fix the issue with NODATA using the wrong encoding (#15) (@tpoisot)
• Replace collect by values (#18) (@tpoisot)
• Fix SimpleSDMLayers tests (#19) (@tpoisot)
• CompatHelper: add new compat entry for ArchGDAL at version 0.9, (keep existing compat) (#22) (@github-actions[bot])
• Convert to WGS84 using GDAL_WARP if needed (#34) (@tpoisot)
• CompatHelper: add new compat entry for GDAL at version 1, (keep existing compat) (#41) (@github-actions[bot])
• Allow additional drivers to the geotiff writer (#47) (@tpoisot)
• [GBIF] add option to look for vector of taxa (#57) (@tpoisot)
• Update the vignette on stats (#58) (@tpoisot)
• Move the pseudo-absences to the top package and add additional methods (#59) (@tpoisot)
• CompatHelper: add new compat entry for Distances at version 0.10, (keep existing compat) (#67) (@github-actions[bot])
• CompatHelper: add new compat entry for StatsBase at version 0.33, (keep existing compat) (#69) (@github-actions[bot])
• Add additional metadata to the providers (#72) (@tpoisot)
• Add a Tables.jl interface for layers (#82) (@tpoisot)
• CompatHelper: add new compat entry for Tables at version 1, (keep existing compat) (#85) (@github-actions[bot])
• Aggregate code coverage analysis (#87) (@tpoisot)
• Work on the dataset cards (#88) (@tpoisot)
• Add some tests to SimpleSDMLayers (#89) (@tpoisot)
• Merge git tags (#92) (@tpoisot)
• [GBIF] Tables.jl (#96) (@tpoisot)
• [SimpleSDMLayers] cell size (#98) (@tpoisot)
• 📝 README (#100) (@tpoisot)
• CompatHelper: add new compat entry for GBIF at version 0.4, (keep existing compat) (#102) (@github-actions[bot])
• Make all layers broadcastable (#103) (@tpoisot)
• 🗺️ Update plotting code to work with Makie as a default (#105) (@tpoisot)
• CompatHelper: add new compat entry for SimpleSDMDatasets at version 0.1, (keep existing compat) (#108) (@github-actions[bot])
• CompatHelper: bump compat for HTTP to 1 for package GBIF, (keep existing compat) (#109) (@github-actions[bot])
• CompatHelper: add new compat entry for GBIF at version 0.4 for package Fauxcurrences, (keep existing compat) (#112) (@github-actions[bot])
• CompatHelper: bump compat for ArchGDAL to 0.10, (keep existing compat) (#114) (@github-actions[bot])
• CompatHelper: add new compat entry for MakieCore at version 0.6, (keep existing compat) (#132) (@github-actions[bot])
• CompatHelper: add new compat entry for SimpleSDMLayers at version 0.9, (keep existing compat) (#133) (@github-actions[bot])
• CompatHelper: add new compat entry for SimpleSDMLayers at version 0.9 for package Fauxcurrences, (keep existing compat) (#135) (@github-actions[bot])
• Bring Fauxcurrences back in the main package (#137) (@tpoisot)
• CompatHelper: add new compat entry for Fauxcurrences at version 0.1, (keep existing compat) (#141) (@github-actions[bot])
• Fix clipping with exact coordinates (#144) (@gabrieldansereau)
• 🐛 correct check on layer inner type (#146) (@tpoisot)
• ✨ Split a layer into tiles (#148) (@tpoisot)
• Test for clipping with natural coordinates (#152) (@gabrieldansereau)
• 🩹 SimpleSDMLayers handling of clip with coordinates on cell boundaries (#153) (@tpoisot)
• 🐛 Update the stitching code to get the right bounding box (#155) (@tpoisot)
• GBIF throws 404 (not 410) for deleted resources (#156) (@tpoisot)
• ✅ add edge case test for clip in SpeciesDistributionToolkit (#159) (@gabrieldansereau)
• compression/format kwargs for geotiffs (#161) (@gottacatchenall)
• fix typos (#162) (@spaette)
• Update the documentation (#163) (@tpoisot)
• Fix the GBIF issue for single argument queries (#166) (@tpoisot)
• Fix the naming issue when imported from a submodule (#167) (@tpoisot)
• Phylopic wrapper (#169) (@tpoisot)
• Read the GBIF enums from the API endpoints (#170) (@tpoisot)
• compat(phylopic): add compat entries (#176) (@tpoisot)
• Update the contributing guidelines (#177) (@tpoisot)
• Add GBIF/Phylopic integration (#179) (@tpoisot)
• Build website for tagged version (#180) (@tpoisot)
• CompatHelper: bump compat for StatsBase to 0.34, (keep existing compat) (#183) (@github-actions[bot])
• CompatHelper: bump compat for StatsBase to 0.34 for package Fauxcurrences, (keep existing compat) (#184) (@github-actions[bot])
• CompatHelper: bump compat for StatsBase to 0.34 for package SimpleSDMLayers, (keep existing compat) (#185) (@github-actions[bot])
• Add methods to invert a layer (#188) (@tpoisot)
• Fixes the geotiff open (#191) (@tpoisot)
• bug(datasets): keychecker fails to check some wrong arguments (#193) (@tpoisot)
• Improving WithinRadius performance (#196) (@gottacatchenall)
• Adding Offset Arrays back as a dependency (#197) (@gottacatchenall)
• Build issue on phylopic (#199) (@tpoisot)
• fix(GBIF): some records are missing a synonym field (#200) (@tpoisot)
• CompatHelper: add new compat entry for OffsetArrays at version 1, (keep existing compat) (#201) (@github-actions[bot])
• Change sample and add DistanceToEvent (#207) (@tpoisot)
• semver(layers): fix (#209) (@tpoisot)
• Bug/layers/method overwrite (#215) (@tpoisot)
• CompatHelper: add new compat entry for Statistics at version 1 for package Fauxcurrences, (keep existing compat) (#218) (@github-actions[bot])
• CompatHelper: add new compat entry for Downloads at version 1 for package SimpleSDMDatasets, (keep existing compat) (#219) (@github-actions[bot])
• CompatHelper: add new compat entry for Statistics at version 1 for package SimpleSDMLayers, (keep existing compat) (#220) (@github-actions[bot])
• CompatHelper: bump compat for MakieCore to 0.7, (keep existing compat) (#221) (@github-actions[bot])
• Phylopic pre-compilation fix (#224) (@tpoisot)
• SurfaceLike -> GridBased (#225) (@tpoisot)
• Bug/sdt/surfacelike (#226) (@tpoisot)
• Use CRS for SimpleSDMLayers (#227) (@tpoisot)
• CompatHelper: bump compat for MakieCore to 0.8, (keep existing compat) (#229) (@github-actions[bot])
• Fauxcurrences v0.2.0 (#232) (@tpoisot)
• SimpleSDMDatasets v0.2.0 (#233) (@tpoisot)
• SimpleSDMLayers v1.0.0 (#234) (@tpoisot)
• Update TagBot.yml (#246) (@tpoisot)
• Update README.md (#247) (@tpoisot)
• CompatHelper: add new compat entry for TestItems at version 1, (keep existing compat) (#248) (@github-actions[bot])
• Github actions for documentation (#249) (@tpoisot)
• semver(datasets): v0.2.1 (#250) (@tpoisot)
• VitePress for the top level doc site (#251) (@tpoisot)
• Cleanup tutorial + howto (#253) (@tpoisot)
• Future climate tutorial update (#255) (@tpoisot)
• Restore fauxcurrence page (#256) (@tpoisot)
• Simplify the navbar (#257) (@tpoisot)
• Add interpolate! (#260) (@tpoisot)
• Add a tutorial on building the BIOCLIM model (#261) (@tpoisot)
• Bug fix: source argument missing from interpolate (#262) (@tpoisot)
• Add support to mask/reveal/hide by polygons (#263) (@tpoisot)
• CompatHelper: add new compat entry for Downloads at version 1, (keep existing compat) (#264) (@github-actions[bot])
• Additional fields to the dataset interface (#265) (@tpoisot)
• Mosaic with polygons (#266) (@tpoisot)
• New interpolate method (#268) (@tpoisot)
• Bounding box when reading is now in WGS84 (#271) (@tpoisot)
• SDeMo (#272) (@tpoisot)
• Prepare main package for SDeMo interop (#273) (@tpoisot)
• chore: prep for tag (#274) (@tpoisot)
• Update CompatHelper.yml (#275) (@tpoisot)
• Create README.md (#276) (@tpoisot)
• removing unnecessary(?) return in _write_geotiff (#277) (@gottacatchenall)
• SDeMo update (#282) (@tpoisot)
• CHELSA url changed? (#283) (@tpoisot)
• SDeMo improvements: inflated response curves, better ensemble support, decision trees (#284) (@tpoisot)
• semver(sdt): v0.1.3 (#286) (@tpoisot)
• SDeMo QoL improvements (#289) (@tpoisot)
• feat(demo): ensemble counterfactuals (#292) (@tpoisot)
• OccurrencesInterface package (#294) (@tpoisot)
• Links to all doc websites on PR (#299) (@tpoisot)
• chore(occ): LICENSE (#304) (@tpoisot)

Closed issues:

• Reading certain tiffs with geotiff is wrong if the CRS is not WGS84 (#32)
• Allow options to ArchGDAL driver when saving Geotiff (#30)
• ecoClimate - Climatic layers from PMIP3 CMIP5 (#33)
• Add layer description to get human-readable description of layer names (#7)
• Add a function to get the URL or reference for a data provider (#8)
• Add a way to remove observations that are documented absences (#9)
• CHELSA2 NODATA is incompatible with data type (#10)
• Move pseudo-absence code to the top-level package (#11)
• Unify distance generation in Fauxcurrences and pseudo-absence code (#12)
• Update the GBIF docstrings (#13)
• Update the model cards (#14)
• Method to get the values in a layer should be values and not collect (#16)
• Fix SimpleSDMLayers tests (#17)
• Logo (#27)
• Migrate issues about possible datasets to this repo (#28)
• Clean the code handling the CRS transformation in geotiff (#35)
• The order of arguments to read/save geotiffs make no sense (#38)
• Vignette on scaling and quantiles (#48)
• Add a method to get occurences for several taxa (#50)
• The vignettes section is getting very large (#60)
• The WorldClim tests are going to fail a lot (#61)
• Find a way to aggregate the code coverage (#62)
• Surface area of cells (#93)
• Replace data frames function by a Tables.jl interface (#94)
• Prepare repo for release of new versions (#95)
• Add Boolean operations on Boolean layers (#99)
• Link to documentation in the original repositories (#101)
• Update plotting code to work with Makie as a default (#104)
• TagBot trigger issue (#140)
• Check the weight matrices in Fauxcurrences (#142)
• Wrong coordinates returned when clipping with exact coordinates (#143)
• IO not exported? (#145)
• Split a layer into tiles (#147)
• Add a test for clipping with exact coordinates (#149)
• Avoid using stride when clipping (#150)
• Add expand options to clip (#151)
• Stitch returns the wrong bounding box in the end (#154)
• Integrate with Phylopic (#157)
• Update documentation (#158)
• geotiff driver kwarg (#160)
• downloaders break when imported as part of another module (#164)
• GBIF queries get converted (for some reason) (#165)
• Add method to download the high-res png (#171)
• Add method to generate an attribution file OR string for Phylopic (#172)
• List images by license when searching for silhouettes (#173)
• Wrong return format for names when items=1 (#174)
• Phylopic/GBIF integration (#175)
• Get the website to build for stable versions (#178)
• Using an unsupported keyword gives an error (but not the right one) (#186)
• No method for -layer (#187)
• Generate release notes that list what changes in all the packages (#189)
• Default writer should be GTiff (#190)
• Writing a layer is creating a file with no extension (#192)
• sample does not generate the expected number of background points (#194)
• cellsize returns NaN for some cells more or less at random (#198)
• Distance to observations for background points (#206)
• Check SurfaceRangeEnveloppe (#208)
• Move test to @testitem (#211)
• Array for a vector of layers is slow (#212)
• Move vignettes out of the documentation? (#213)
• Fauxcurrence overload issue (#214)
• LUH² (#217)
• CRS (#222)
• Phylopic.jl precompiles infinitely without stopping (#223)
• PaleoClim (#228)
• Masking/segmentating layer based on vector (#231)
• Move documentation to VitePress (#245)
• Restore the Fauxcurrences tutorial (#252)
• Update the tutorial for future climate data (#254)
• Additional method to interpolate when we already have the destination layer (#258)
• Add fields to the SimpleSDMDatasets interface (#259)
• interpolate layer to same CRS/size as target layer (#267)
• zeros/ones for layers is buggy - is it maintaining everything??? (#269)
• The bounding box should be converted from WGS84 to the layer CRS (#270)
• The fscore formula is wrong (#278)
• Dispatch for Ensemble prediction is ambiguous (#279)
• Define abstract types for Bagging and Ensemble (#280)
• Add pop!, push!, etc to Ensemble (#281)
• New versions (note to self) (#285)
• SDeMo chokes on some decision trees when a single node is involved (#287)
• Add maxdepth to decision trees (#288)
• Update the PR comment issue (#298)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 6 months ago

SpeciesDistributionToolkit - SDeMo-v0.0.7

SDeMo SDeMo-v0.0.7

Diff since SDeMo-v0.0.6

Merged pull requests:

• Bring VIF back (#307) (@tpoisot)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 6 months ago

SpeciesDistributionToolkit - SDeMo-v0.0.6

SDeMo SDeMo-v0.0.6

Diff since SDeMo-v0.0.5

Merged pull requests:

• OccurrencesInterface package (#294) (@tpoisot)
• Links to all doc websites on PR (#299) (@tpoisot)
• chore(occ): LICENSE (#304) (@tpoisot)
• SDeMo bugfix and QOL (#306) (@tpoisot)

Closed issues:

• Move test to @testitem (#211)
• add a dispatch to the ConfusionMatrix functions (#290)
• cannot cross-validate when using the consensus argument (#293)
• Update the PR comment issue (#298)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 6 months ago

SpeciesDistributionToolkit - SDeMo-v0.0.5

SDeMo SDeMo-v0.0.5

Diff since SDeMo-v0.0.4

Merged pull requests:

• feat(demo): ensemble counterfactuals (#292) (@tpoisot)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 7 months ago

SpeciesDistributionToolkit - SDeMo-v0.0.4

SDeMo SDeMo-v0.0.4

Diff since SDeMo-v0.0.3

Merged pull requests:

• semver(sdt): v0.1.3 (#286) (@tpoisot)
• SDeMo QoL improvements (#289) (@tpoisot)

Closed issues:

• New versions (note to self) (#285)
• SDeMo chokes on some decision trees when a single node is involved (#287)
• Add maxdepth to decision trees (#288)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 7 months ago

SpeciesDistributionToolkit - v0.1.3

SpeciesDistributionToolkit v0.1.3

Diff since v0.1.2

Merged pull requests:

• SDeMo improvements: inflated response curves, better ensemble support, decision trees (#284) (@tpoisot)
• semver(sdt): v0.1.3 (#286) (@tpoisot)

Closed issues:

• New versions (note to self) (#285)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 7 months ago

SpeciesDistributionToolkit - SDeMo-v0.0.3

SDeMo SDeMo-v0.0.3

Merged pull requests:

• CompatHelper: add new compat entry for Reexport at version 1, (keep existing compat) (#3) (@github-actions[bot])
• Fix the issue with NODATA using the wrong encoding (#15) (@tpoisot)
• Replace collect by values (#18) (@tpoisot)
• Fix SimpleSDMLayers tests (#19) (@tpoisot)
• CompatHelper: add new compat entry for ArchGDAL at version 0.9, (keep existing compat) (#22) (@github-actions[bot])
• Convert to WGS84 using GDAL_WARP if needed (#34) (@tpoisot)
• CompatHelper: add new compat entry for GDAL at version 1, (keep existing compat) (#41) (@github-actions[bot])
• Allow additional drivers to the geotiff writer (#47) (@tpoisot)
• [GBIF] add option to look for vector of taxa (#57) (@tpoisot)
• Update the vignette on stats (#58) (@tpoisot)
• Move the pseudo-absences to the top package and add additional methods (#59) (@tpoisot)
• CompatHelper: add new compat entry for Distances at version 0.10, (keep existing compat) (#67) (@github-actions[bot])
• CompatHelper: add new compat entry for StatsBase at version 0.33, (keep existing compat) (#69) (@github-actions[bot])
• Add additional metadata to the providers (#72) (@tpoisot)
• Add a Tables.jl interface for layers (#82) (@tpoisot)
• CompatHelper: add new compat entry for Tables at version 1, (keep existing compat) (#85) (@github-actions[bot])
• Aggregate code coverage analysis (#87) (@tpoisot)
• Work on the dataset cards (#88) (@tpoisot)
• Add some tests to SimpleSDMLayers (#89) (@tpoisot)
• Merge git tags (#92) (@tpoisot)
• [GBIF] Tables.jl (#96) (@tpoisot)
• [SimpleSDMLayers] cell size (#98) (@tpoisot)
• 📝 README (#100) (@tpoisot)
• CompatHelper: add new compat entry for GBIF at version 0.4, (keep existing compat) (#102) (@github-actions[bot])
• Make all layers broadcastable (#103) (@tpoisot)
• 🗺️ Update plotting code to work with Makie as a default (#105) (@tpoisot)
• CompatHelper: add new compat entry for SimpleSDMDatasets at version 0.1, (keep existing compat) (#108) (@github-actions[bot])
• CompatHelper: bump compat for HTTP to 1 for package GBIF, (keep existing compat) (#109) (@github-actions[bot])
• CompatHelper: add new compat entry for GBIF at version 0.4 for package Fauxcurrences, (keep existing compat) (#112) (@github-actions[bot])
• CompatHelper: bump compat for ArchGDAL to 0.10, (keep existing compat) (#114) (@github-actions[bot])
• CompatHelper: add new compat entry for MakieCore at version 0.6, (keep existing compat) (#132) (@github-actions[bot])
• CompatHelper: add new compat entry for SimpleSDMLayers at version 0.9, (keep existing compat) (#133) (@github-actions[bot])
• CompatHelper: add new compat entry for SimpleSDMLayers at version 0.9 for package Fauxcurrences, (keep existing compat) (#135) (@github-actions[bot])
• Bring Fauxcurrences back in the main package (#137) (@tpoisot)
• CompatHelper: add new compat entry for Fauxcurrences at version 0.1, (keep existing compat) (#141) (@github-actions[bot])
• Fix clipping with exact coordinates (#144) (@gabrieldansereau)
• 🐛 correct check on layer inner type (#146) (@tpoisot)
• ✨ Split a layer into tiles (#148) (@tpoisot)
• Test for clipping with natural coordinates (#152) (@gabrieldansereau)
• 🩹 SimpleSDMLayers handling of clip with coordinates on cell boundaries (#153) (@tpoisot)
• 🐛 Update the stitching code to get the right bounding box (#155) (@tpoisot)
• GBIF throws 404 (not 410) for deleted resources (#156) (@tpoisot)
• ✅ add edge case test for clip in SpeciesDistributionToolkit (#159) (@gabrieldansereau)
• compression/format kwargs for geotiffs (#161) (@gottacatchenall)
• fix typos (#162) (@spaette)
• Update the documentation (#163) (@tpoisot)
• Fix the GBIF issue for single argument queries (#166) (@tpoisot)
• Fix the naming issue when imported from a submodule (#167) (@tpoisot)
• Phylopic wrapper (#169) (@tpoisot)
• Read the GBIF enums from the API endpoints (#170) (@tpoisot)
• compat(phylopic): add compat entries (#176) (@tpoisot)
• Update the contributing guidelines (#177) (@tpoisot)
• Add GBIF/Phylopic integration (#179) (@tpoisot)
• Build website for tagged version (#180) (@tpoisot)
• CompatHelper: bump compat for StatsBase to 0.34, (keep existing compat) (#183) (@github-actions[bot])
• CompatHelper: bump compat for StatsBase to 0.34 for package Fauxcurrences, (keep existing compat) (#184) (@github-actions[bot])
• CompatHelper: bump compat for StatsBase to 0.34 for package SimpleSDMLayers, (keep existing compat) (#185) (@github-actions[bot])
• Add methods to invert a layer (#188) (@tpoisot)
• Fixes the geotiff open (#191) (@tpoisot)
• bug(datasets): keychecker fails to check some wrong arguments (#193) (@tpoisot)
• Improving WithinRadius performance (#196) (@gottacatchenall)
• Adding Offset Arrays back as a dependency (#197) (@gottacatchenall)
• Build issue on phylopic (#199) (@tpoisot)
• fix(GBIF): some records are missing a synonym field (#200) (@tpoisot)
• CompatHelper: add new compat entry for OffsetArrays at version 1, (keep existing compat) (#201) (@github-actions[bot])
• Change sample and add DistanceToEvent (#207) (@tpoisot)
• semver(layers): fix (#209) (@tpoisot)
• Bug/layers/method overwrite (#215) (@tpoisot)
• CompatHelper: add new compat entry for Statistics at version 1 for package Fauxcurrences, (keep existing compat) (#218) (@github-actions[bot])
• CompatHelper: add new compat entry for Downloads at version 1 for package SimpleSDMDatasets, (keep existing compat) (#219) (@github-actions[bot])
• CompatHelper: add new compat entry for Statistics at version 1 for package SimpleSDMLayers, (keep existing compat) (#220) (@github-actions[bot])
• CompatHelper: bump compat for MakieCore to 0.7, (keep existing compat) (#221) (@github-actions[bot])
• Phylopic pre-compilation fix (#224) (@tpoisot)
• SurfaceLike -> GridBased (#225) (@tpoisot)
• Bug/sdt/surfacelike (#226) (@tpoisot)
• Use CRS for SimpleSDMLayers (#227) (@tpoisot)
• CompatHelper: bump compat for MakieCore to 0.8, (keep existing compat) (#229) (@github-actions[bot])
• Fauxcurrences v0.2.0 (#232) (@tpoisot)
• SimpleSDMDatasets v0.2.0 (#233) (@tpoisot)
• SimpleSDMLayers v1.0.0 (#234) (@tpoisot)
• Update TagBot.yml (#246) (@tpoisot)
• Update README.md (#247) (@tpoisot)
• CompatHelper: add new compat entry for TestItems at version 1, (keep existing compat) (#248) (@github-actions[bot])
• Github actions for documentation (#249) (@tpoisot)
• semver(datasets): v0.2.1 (#250) (@tpoisot)
• VitePress for the top level doc site (#251) (@tpoisot)
• Cleanup tutorial + howto (#253) (@tpoisot)
• Future climate tutorial update (#255) (@tpoisot)
• Restore fauxcurrence page (#256) (@tpoisot)
• Simplify the navbar (#257) (@tpoisot)
• Add interpolate! (#260) (@tpoisot)
• Add a tutorial on building the BIOCLIM model (#261) (@tpoisot)
• Bug fix: source argument missing from interpolate (#262) (@tpoisot)
• Add support to mask/reveal/hide by polygons (#263) (@tpoisot)
• CompatHelper: add new compat entry for Downloads at version 1, (keep existing compat) (#264) (@github-actions[bot])
• Additional fields to the dataset interface (#265) (@tpoisot)
• Mosaic with polygons (#266) (@tpoisot)
• New interpolate method (#268) (@tpoisot)
• Bounding box when reading is now in WGS84 (#271) (@tpoisot)
• SDeMo (#272) (@tpoisot)
• Prepare main package for SDeMo interop (#273) (@tpoisot)
• chore: prep for tag (#274) (@tpoisot)
• Update CompatHelper.yml (#275) (@tpoisot)
• Create README.md (#276) (@tpoisot)
• removing unnecessary(?) return in _write_geotiff (#277) (@gottacatchenall)
• SDeMo update (#282) (@tpoisot)
• CHELSA url changed? (#283) (@tpoisot)
• SDeMo improvements: inflated response curves, better ensemble support, decision trees (#284) (@tpoisot)

Closed issues:

• Reading certain tiffs with geotiff is wrong if the CRS is not WGS84 (#32)
• Allow options to ArchGDAL driver when saving Geotiff (#30)
• ecoClimate - Climatic layers from PMIP3 CMIP5 (#33)
• Add layer description to get human-readable description of layer names (#7)
• Add a function to get the URL or reference for a data provider (#8)
• Add a way to remove observations that are documented absences (#9)
• CHELSA2 NODATA is incompatible with data type (#10)
• Move pseudo-absence code to the top-level package (#11)
• Unify distance generation in Fauxcurrences and pseudo-absence code (#12)
• Update the GBIF docstrings (#13)
• Update the model cards (#14)
• Method to get the values in a layer should be values and not collect (#16)
• Fix SimpleSDMLayers tests (#17)
• Logo (#27)
• Migrate issues about possible datasets to this repo (#28)
• Clean the code handling the CRS transformation in geotiff (#35)
• The order of arguments to read/save geotiffs make no sense (#38)
• Vignette on scaling and quantiles (#48)
• Add a method to get occurences for several taxa (#50)
• The vignettes section is getting very large (#60)
• The WorldClim tests are going to fail a lot (#61)
• Find a way to aggregate the code coverage (#62)
• Surface area of cells (#93)
• Replace data frames function by a Tables.jl interface (#94)
• Prepare repo for release of new versions (#95)
• Add Boolean operations on Boolean layers (#99)
• Link to documentation in the original repositories (#101)
• Update plotting code to work with Makie as a default (#104)
• TagBot trigger issue (#140)
• Check the weight matrices in Fauxcurrences (#142)
• Wrong coordinates returned when clipping with exact coordinates (#143)
• IO not exported? (#145)
• Split a layer into tiles (#147)
• Add a test for clipping with exact coordinates (#149)
• Avoid using stride when clipping (#150)
• Add expand options to clip (#151)
• Stitch returns the wrong bounding box in the end (#154)
• Integrate with Phylopic (#157)
• Update documentation (#158)
• geotiff driver kwarg (#160)
• downloaders break when imported as part of another module (#164)
• GBIF queries get converted (for some reason) (#165)
• Add method to download the high-res png (#171)
• Add method to generate an attribution file OR string for Phylopic (#172)
• List images by license when searching for silhouettes (#173)
• Wrong return format for names when items=1 (#174)
• Phylopic/GBIF integration (#175)
• Get the website to build for stable versions (#178)
• Using an unsupported keyword gives an error (but not the right one) (#186)
• No method for -layer (#187)
• Generate release notes that list what changes in all the packages (#189)
• Default writer should be GTiff (#190)
• Writing a layer is creating a file with no extension (#192)
• sample does not generate the expected number of background points (#194)
• cellsize returns NaN for some cells more or less at random (#198)
• Distance to observations for background points (#206)
• Check SurfaceRangeEnveloppe (#208)
• Array for a vector of layers is slow (#212)
• Move vignettes out of the documentation? (#213)
• Fauxcurrence overload issue (#214)
• LUH² (#217)
• CRS (#222)
• Phylopic.jl precompiles infinitely without stopping (#223)
• PaleoClim (#228)
• Masking/segmentating layer based on vector (#231)
• Move documentation to VitePress (#245)
• Restore the Fauxcurrences tutorial (#252)
• Update the tutorial for future climate data (#254)
• Additional method to interpolate when we already have the destination layer (#258)
• Add fields to the SimpleSDMDatasets interface (#259)
• interpolate layer to same CRS/size as target layer (#267)
• zeros/ones for layers is buggy - is it maintaining everything??? (#269)
• The bounding box should be converted from WGS84 to the layer CRS (#270)
• The fscore formula is wrong (#278)
• Dispatch for Ensemble prediction is ambiguous (#279)
• Define abstract types for Bagging and Ensemble (#280)
• Add pop!, push!, etc to Ensemble (#281)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 7 months ago

SpeciesDistributionToolkit - v0.1.2

SpeciesDistributionToolkit v0.1.2

Diff since v0.1.1

Merged pull requests:

• Add support to mask/reveal/hide by polygons (#263) (@tpoisot)
• CompatHelper: add new compat entry for Downloads at version 1, (keep existing compat) (#264) (@github-actions[bot])
• Additional fields to the dataset interface (#265) (@tpoisot)
• Mosaic with polygons (#266) (@tpoisot)
• New interpolate method (#268) (@tpoisot)
• Bounding box when reading is now in WGS84 (#271) (@tpoisot)
• SDeMo (#272) (@tpoisot)
• Prepare main package for SDeMo interop (#273) (@tpoisot)
• chore: prep for tag (#274) (@tpoisot)
• Update CompatHelper.yml (#275) (@tpoisot)
• Create README.md (#276) (@tpoisot)
• removing unnecessary(?) return in _write_geotiff (#277) (@gottacatchenall)
• SDeMo update (#282) (@tpoisot)
• CHELSA url changed? (#283) (@tpoisot)

Closed issues:

• LUH² (#217)
• Masking/segmentating layer based on vector (#231)
• Add fields to the SimpleSDMDatasets interface (#259)
• interpolate layer to same CRS/size as target layer (#267)
• zeros/ones for layers is buggy - is it maintaining everything??? (#269)
• The bounding box should be converted from WGS84 to the layer CRS (#270)
• The fscore formula is wrong (#278)
• Dispatch for Ensemble prediction is ambiguous (#279)
• Define abstract types for Bagging and Ensemble (#280)
• Add pop!, push!, etc to Ensemble (#281)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 7 months ago

SpeciesDistributionToolkit - SimpleSDMDatasets-v0.2.3

SimpleSDMDatasets SimpleSDMDatasets-v0.2.3

Diff since SimpleSDMDatasets-v0.2.2

Merged pull requests:

• Mosaic with polygons (#266) (@tpoisot)
• New interpolate method (#268) (@tpoisot)
• Bounding box when reading is now in WGS84 (#271) (@tpoisot)
• SDeMo (#272) (@tpoisot)
• chore: prep for tag (#274) (@tpoisot)
• Update CompatHelper.yml (#275) (@tpoisot)
• Create README.md (#276) (@tpoisot)
• removing unnecessary(?) return in _write_geotiff (#277) (@gottacatchenall)
• SDeMo update (#282) (@tpoisot)
• CHELSA url changed? (#283) (@tpoisot)

Closed issues:

• interpolate layer to same CRS/size as target layer (#267)
• zeros/ones for layers is buggy - is it maintaining everything??? (#269)
• The bounding box should be converted from WGS84 to the layer CRS (#270)
• The fscore formula is wrong (#278)
• Dispatch for Ensemble prediction is ambiguous (#279)
• Define abstract types for Bagging and Ensemble (#280)
• Add pop!, push!, etc to Ensemble (#281)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 7 months ago

SpeciesDistributionToolkit - SimpleSDMLayers-v1.0.5

SimpleSDMLayers SimpleSDMLayers-v1.0.5

Diff since SimpleSDMLayers-v1.0.4

Merged pull requests:

• SDeMo (#272) (@tpoisot)
• chore: prep for tag (#274) (@tpoisot)
• Update CompatHelper.yml (#275) (@tpoisot)
• Create README.md (#276) (@tpoisot)
• removing unnecessary(?) return in _write_geotiff (#277) (@gottacatchenall)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 7 months ago

SpeciesDistributionToolkit - SimpleSDMLayers-v1.0.4

SimpleSDMLayers SimpleSDMLayers-v1.0.4

Diff since SimpleSDMLayers-v1.0.3

Merged pull requests:

• Mosaic with polygons (#266) (@tpoisot)
• Bounding box when reading is now in WGS84 (#271) (@tpoisot)

Closed issues:

• zeros/ones for layers is buggy - is it maintaining everything??? (#269)
• The bounding box should be converted from WGS84 to the layer CRS (#270)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 7 months ago

SpeciesDistributionToolkit - SimpleSDMLayers-v1.0.3

SimpleSDMLayers SimpleSDMLayers-v1.0.3

Diff since SimpleSDMLayers-v1.0.2

Merged pull requests:

• Add a tutorial on building the BIOCLIM model (#261) (@tpoisot)
• Add support to mask/reveal/hide by polygons (#263) (@tpoisot)
• CompatHelper: add new compat entry for Downloads at version 1, (keep existing compat) (#264) (@github-actions[bot])
• Additional fields to the dataset interface (#265) (@tpoisot)
• New interpolate method (#268) (@tpoisot)

Closed issues:

• LUH² (#217)
• Masking/segmentating layer based on vector (#231)
• Add fields to the SimpleSDMDatasets interface (#259)
• interpolate layer to same CRS/size as target layer (#267)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 7 months ago

SpeciesDistributionToolkit - SimpleSDMDatasets-v0.2.2

SimpleSDMDatasets SimpleSDMDatasets-v0.2.2

Diff since SimpleSDMDatasets-v0.2.1

Merged pull requests:

• VitePress for the top level doc site (#251) (@tpoisot)
• Cleanup tutorial + howto (#253) (@tpoisot)
• Future climate tutorial update (#255) (@tpoisot)
• Restore fauxcurrence page (#256) (@tpoisot)
• Simplify the navbar (#257) (@tpoisot)
• Add interpolate! (#260) (@tpoisot)
• Add a tutorial on building the BIOCLIM model (#261) (@tpoisot)
• Bug fix: source argument missing from interpolate (#262) (@tpoisot)
• Add support to mask/reveal/hide by polygons (#263) (@tpoisot)
• CompatHelper: add new compat entry for Downloads at version 1, (keep existing compat) (#264) (@github-actions[bot])
• Additional fields to the dataset interface (#265) (@tpoisot)

Closed issues:

• LUH² (#217)
• Masking/segmentating layer based on vector (#231)
• Move documentation to VitePress (#245)
• Restore the Fauxcurrences tutorial (#252)
• Update the tutorial for future climate data (#254)
• Additional method to interpolate when we already have the destination layer (#258)
• Add fields to the SimpleSDMDatasets interface (#259)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 7 months ago

SpeciesDistributionToolkit - v0.1.1

SpeciesDistributionToolkit v0.1.1

Diff since v0.1.0

Merged pull requests:

• semver(datasets): v0.2.1 (#250) (@tpoisot)
• VitePress for the top level doc site (#251) (@tpoisot)
• Cleanup tutorial + howto (#253) (@tpoisot)
• Future climate tutorial update (#255) (@tpoisot)
• Restore fauxcurrence page (#256) (@tpoisot)
• Simplify the navbar (#257) (@tpoisot)
• Add interpolate! (#260) (@tpoisot)
• Add a tutorial on building the BIOCLIM model (#261) (@tpoisot)
• Bug fix: source argument missing from interpolate (#262) (@tpoisot)

Closed issues:

• Move documentation to VitePress (#245)
• Restore the Fauxcurrences tutorial (#252)
• Update the tutorial for future climate data (#254)
• Additional method to interpolate when we already have the destination layer (#258)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 7 months ago

SpeciesDistributionToolkit - SimpleSDMLayers-v1.0.2

SimpleSDMLayers SimpleSDMLayers-v1.0.2

Diff since SimpleSDMLayers-v1.0.1

Merged pull requests:

• Bug fix: source argument missing from interpolate (#262) (@tpoisot)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 7 months ago

SpeciesDistributionToolkit - SimpleSDMLayers-v1.0.1

SimpleSDMLayers SimpleSDMLayers-v1.0.1

Diff since SimpleSDMLayers-v1.0.0

Merged pull requests:

• CompatHelper: add new compat entry for TestItems at version 1, (keep existing compat) (#248) (@github-actions[bot])
• Github actions for documentation (#249) (@tpoisot)
• semver(datasets): v0.2.1 (#250) (@tpoisot)
• VitePress for the top level doc site (#251) (@tpoisot)
• Cleanup tutorial + howto (#253) (@tpoisot)
• Future climate tutorial update (#255) (@tpoisot)
• Restore fauxcurrence page (#256) (@tpoisot)
• Simplify the navbar (#257) (@tpoisot)
• Add interpolate! (#260) (@tpoisot)

Closed issues:

• Move documentation to VitePress (#245)
• Restore the Fauxcurrences tutorial (#252)
• Update the tutorial for future climate data (#254)
• Additional method to interpolate when we already have the destination layer (#258)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 7 months ago

SpeciesDistributionToolkit - SimpleSDMDatasets-v0.2.1

What's Changed

• Update README.md by @tpoisot in https://github.com/PoisotLab/SpeciesDistributionToolkit.jl/pull/247
• Fauxcurrences v0.2.0 by @tpoisot in https://github.com/PoisotLab/SpeciesDistributionToolkit.jl/pull/232
• CompatHelper: add new compat entry for TestItems at version 1, (keep existing compat) by @github-actions in https://github.com/PoisotLab/SpeciesDistributionToolkit.jl/pull/248
• Github actions for documentation by @tpoisot in https://github.com/PoisotLab/SpeciesDistributionToolkit.jl/pull/249
• semver(datasets): v0.2.1 by @tpoisot in https://github.com/PoisotLab/SpeciesDistributionToolkit.jl/pull/250

Full Changelog: https://github.com/PoisotLab/SpeciesDistributionToolkit.jl/compare/SimpleSDMDatasets-v0.2.0...SimpleSDMDatasets-v0.2.1

Biosphere - Species Distribution Modeling - Julia
Published by tpoisot 8 months ago

SpeciesDistributionToolkit - v0.1.0

SpeciesDistributionToolkit v0.1.0

Diff since v0.0.11

Merged pull requests:

• Use CRS for SimpleSDMLayers (#227) (@tpoisot)
• Fauxcurrences v0.2.0 (#232) (@tpoisot)
• SimpleSDMDatasets v0.2.0 (#233) (@tpoisot)
• SimpleSDMLayers v1.0.0 (#234) (@tpoisot)
• Update TagBot.yml (#246) (@tpoisot)
• Update README.md (#247) (@tpoisot)
• CompatHelper: add new compat entry for TestItems at version 1, (keep existing compat) (#248) (@github-actions[bot])
• Github actions for documentation (#249) (@tpoisot)

Closed issues:

• ecoClimate - Climatic layers from PMIP3 CMIP5 (#33)
• PaleoClim (#228)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 8 months ago

SpeciesDistributionToolkit - Fauxcurrences-v0.2.0

What's Changed

• Update README.md by @tpoisot in https://github.com/PoisotLab/SpeciesDistributionToolkit.jl/pull/247
• Fauxcurrences v0.2.0 by @tpoisot in https://github.com/PoisotLab/SpeciesDistributionToolkit.jl/pull/232

Full Changelog: https://github.com/PoisotLab/SpeciesDistributionToolkit.jl/compare/SimpleSDMDatasets-v0.2.0...Fauxcurrences-v0.2.0

Biosphere - Species Distribution Modeling - Julia
Published by tpoisot 8 months ago

SpeciesDistributionToolkit - SimpleSDMDatasets-v0.2.0

What's Changed

• Update TagBot.yml by @tpoisot in https://github.com/PoisotLab/SpeciesDistributionToolkit.jl/pull/246
• SimpleSDMDatasets v0.2.0 by @tpoisot in https://github.com/PoisotLab/SpeciesDistributionToolkit.jl/pull/233

Full Changelog: https://github.com/PoisotLab/SpeciesDistributionToolkit.jl/compare/SimpleSDMLayers-v1.0.0...SimpleSDMDatasets-v0.2.0

Biosphere - Species Distribution Modeling - Julia
Published by tpoisot 8 months ago

SpeciesDistributionToolkit - SimpleSDMLayers-v1.0.0

What's Changed

• Use CRS for SimpleSDMLayers by @tpoisot in https://github.com/PoisotLab/SpeciesDistributionToolkit.jl/pull/227
• SimpleSDMLayers v1.0.0 by @tpoisot in https://github.com/PoisotLab/SpeciesDistributionToolkit.jl/pull/234

Full Changelog: https://github.com/PoisotLab/SpeciesDistributionToolkit.jl/compare/v0.0.11...SimpleSDMLayers-v1.0.0

Biosphere - Species Distribution Modeling - Julia
Published by tpoisot 8 months ago

SpeciesDistributionToolkit - v0.0.11

SpeciesDistributionToolkit v0.0.11

Diff since v0.0.10

Merged pull requests:

• Bug/layers/method overwrite (#215) (@tpoisot)
• CompatHelper: add new compat entry for Statistics at version 1 for package Fauxcurrences, (keep existing compat) (#218) (@github-actions[bot])
• CompatHelper: add new compat entry for Downloads at version 1 for package SimpleSDMDatasets, (keep existing compat) (#219) (@github-actions[bot])
• CompatHelper: add new compat entry for Statistics at version 1 for package SimpleSDMLayers, (keep existing compat) (#220) (@github-actions[bot])
• CompatHelper: bump compat for MakieCore to 0.7, (keep existing compat) (#221) (@github-actions[bot])
• Phylopic pre-compilation fix (#224) (@tpoisot)
• SurfaceLike -> GridBased (#225) (@tpoisot)
• Bug/sdt/surfacelike (#226) (@tpoisot)
• CompatHelper: bump compat for MakieCore to 0.8, (keep existing compat) (#229) (@github-actions[bot])

Closed issues:

• Logo (#27)
• Generate release notes that list what changes in all the packages (#189)
• cellsize returns NaN for some cells more or less at random (#198)
• Array for a vector of layers is slow (#212)
• Move vignettes out of the documentation? (#213)
• Fauxcurrence overload issue (#214)
• CRS (#222)
• Phylopic.jl precompiles infinitely without stopping (#223)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 8 months ago

SpeciesDistributionToolkit - Phylopic-v0.0.5

Phylopic Phylopic-v0.0.5

Merged pull requests:

• CompatHelper: add new compat entry for Reexport at version 1, (keep existing compat) (#3) (@github-actions[bot])
• Fix the issue with NODATA using the wrong encoding (#15) (@tpoisot)
• Replace collect by values (#18) (@tpoisot)
• Fix SimpleSDMLayers tests (#19) (@tpoisot)
• CompatHelper: add new compat entry for ArchGDAL at version 0.9, (keep existing compat) (#22) (@github-actions[bot])
• Convert to WGS84 using GDAL_WARP if needed (#34) (@tpoisot)
• CompatHelper: add new compat entry for GDAL at version 1, (keep existing compat) (#41) (@github-actions[bot])
• Allow additional drivers to the geotiff writer (#47) (@tpoisot)
• [GBIF] add option to look for vector of taxa (#57) (@tpoisot)
• Update the vignette on stats (#58) (@tpoisot)
• Move the pseudo-absences to the top package and add additional methods (#59) (@tpoisot)
• CompatHelper: add new compat entry for Distances at version 0.10, (keep existing compat) (#67) (@github-actions[bot])
• CompatHelper: add new compat entry for StatsBase at version 0.33, (keep existing compat) (#69) (@github-actions[bot])
• Add additional metadata to the providers (#72) (@tpoisot)
• Add a Tables.jl interface for layers (#82) (@tpoisot)
• CompatHelper: add new compat entry for Tables at version 1, (keep existing compat) (#85) (@github-actions[bot])
• Aggregate code coverage analysis (#87) (@tpoisot)
• Work on the dataset cards (#88) (@tpoisot)
• Add some tests to SimpleSDMLayers (#89) (@tpoisot)
• Merge git tags (#92) (@tpoisot)
• [GBIF] Tables.jl (#96) (@tpoisot)
• [SimpleSDMLayers] cell size (#98) (@tpoisot)
• 📝 README (#100) (@tpoisot)
• CompatHelper: add new compat entry for GBIF at version 0.4, (keep existing compat) (#102) (@github-actions[bot])
• Make all layers broadcastable (#103) (@tpoisot)
• 🗺️ Update plotting code to work with Makie as a default (#105) (@tpoisot)
• CompatHelper: add new compat entry for SimpleSDMDatasets at version 0.1, (keep existing compat) (#108) (@github-actions[bot])
• CompatHelper: bump compat for HTTP to 1 for package GBIF, (keep existing compat) (#109) (@github-actions[bot])
• CompatHelper: add new compat entry for GBIF at version 0.4 for package Fauxcurrences, (keep existing compat) (#112) (@github-actions[bot])
• CompatHelper: bump compat for ArchGDAL to 0.10, (keep existing compat) (#114) (@github-actions[bot])
• CompatHelper: add new compat entry for MakieCore at version 0.6, (keep existing compat) (#132) (@github-actions[bot])
• CompatHelper: add new compat entry for SimpleSDMLayers at version 0.9, (keep existing compat) (#133) (@github-actions[bot])
• CompatHelper: add new compat entry for SimpleSDMLayers at version 0.9 for package Fauxcurrences, (keep existing compat) (#135) (@github-actions[bot])
• Bring Fauxcurrences back in the main package (#137) (@tpoisot)
• CompatHelper: add new compat entry for Fauxcurrences at version 0.1, (keep existing compat) (#141) (@github-actions[bot])
• Fix clipping with exact coordinates (#144) (@gabrieldansereau)
• 🐛 correct check on layer inner type (#146) (@tpoisot)
• ✨ Split a layer into tiles (#148) (@tpoisot)
• Test for clipping with natural coordinates (#152) (@gabrieldansereau)
• 🩹 SimpleSDMLayers handling of clip with coordinates on cell boundaries (#153) (@tpoisot)
• 🐛 Update the stitching code to get the right bounding box (#155) (@tpoisot)
• GBIF throws 404 (not 410) for deleted resources (#156) (@tpoisot)
• ✅ add edge case test for clip in SpeciesDistributionToolkit (#159) (@gabrieldansereau)
• compression/format kwargs for geotiffs (#161) (@gottacatchenall)
• fix typos (#162) (@spaette)
• Update the documentation (#163) (@tpoisot)
• Fix the GBIF issue for single argument queries (#166) (@tpoisot)
• Fix the naming issue when imported from a submodule (#167) (@tpoisot)
• Phylopic wrapper (#169) (@tpoisot)
• Read the GBIF enums from the API endpoints (#170) (@tpoisot)
• compat(phylopic): add compat entries (#176) (@tpoisot)
• Update the contributing guidelines (#177) (@tpoisot)
• Add GBIF/Phylopic integration (#179) (@tpoisot)
• Build website for tagged version (#180) (@tpoisot)
• CompatHelper: bump compat for StatsBase to 0.34, (keep existing compat) (#183) (@github-actions[bot])
• CompatHelper: bump compat for StatsBase to 0.34 for package Fauxcurrences, (keep existing compat) (#184) (@github-actions[bot])
• CompatHelper: bump compat for StatsBase to 0.34 for package SimpleSDMLayers, (keep existing compat) (#185) (@github-actions[bot])
• Add methods to invert a layer (#188) (@tpoisot)
• Fixes the geotiff open (#191) (@tpoisot)
• bug(datasets): keychecker fails to check some wrong arguments (#193) (@tpoisot)
• Improving WithinRadius performance (#196) (@gottacatchenall)
• Adding Offset Arrays back as a dependency (#197) (@gottacatchenall)
• Build issue on phylopic (#199) (@tpoisot)
• fix(GBIF): some records are missing a synonym field (#200) (@tpoisot)
• CompatHelper: add new compat entry for OffsetArrays at version 1, (keep existing compat) (#201) (@github-actions[bot])
• Change sample and add DistanceToEvent (#207) (@tpoisot)
• semver(layers): fix (#209) (@tpoisot)
• Bug/layers/method overwrite (#215) (@tpoisot)
• CompatHelper: add new compat entry for Statistics at version 1 for package Fauxcurrences, (keep existing compat) (#218) (@github-actions[bot])
• CompatHelper: add new compat entry for Downloads at version 1 for package SimpleSDMDatasets, (keep existing compat) (#219) (@github-actions[bot])
• CompatHelper: add new compat entry for Statistics at version 1 for package SimpleSDMLayers, (keep existing compat) (#220) (@github-actions[bot])
• CompatHelper: bump compat for MakieCore to 0.7, (keep existing compat) (#221) (@github-actions[bot])
• Phylopic pre-compilation fix (#224) (@tpoisot)
• SurfaceLike -> GridBased (#225) (@tpoisot)
• Bug/sdt/surfacelike (#226) (@tpoisot)

Closed issues:

• Reading certain tiffs with geotiff is wrong if the CRS is not WGS84 (#32)
• Allow options to ArchGDAL driver when saving Geotiff (#30)
• Add layer description to get human-readable description of layer names (#7)
• Add a function to get the URL or reference for a data provider (#8)
• Add a way to remove observations that are documented absences (#9)
• CHELSA2 NODATA is incompatible with data type (#10)
• Move pseudo-absence code to the top-level package (#11)
• Unify distance generation in Fauxcurrences and pseudo-absence code (#12)
• Update the GBIF docstrings (#13)
• Update the model cards (#14)
• Method to get the values in a layer should be values and not collect (#16)
• Fix SimpleSDMLayers tests (#17)
• Logo (#27)
• Migrate issues about possible datasets to this repo (#28)
• Clean the code handling the CRS transformation in geotiff (#35)
• The order of arguments to read/save geotiffs make no sense (#38)
• Vignette on scaling and quantiles (#48)
• Add a method to get occurences for several taxa (#50)
• The vignettes section is getting very large (#60)
• The WorldClim tests are going to fail a lot (#61)
• Find a way to aggregate the code coverage (#62)
• Surface area of cells (#93)
• Replace data frames function by a Tables.jl interface (#94)
• Prepare repo for release of new versions (#95)
• Add Boolean operations on Boolean layers (#99)
• Link to documentation in the original repositories (#101)
• Update plotting code to work with Makie as a default (#104)
• TagBot trigger issue (#140)
• Check the weight matrices in Fauxcurrences (#142)
• Wrong coordinates returned when clipping with exact coordinates (#143)
• IO not exported? (#145)
• Split a layer into tiles (#147)
• Add a test for clipping with exact coordinates (#149)
• Avoid using stride when clipping (#150)
• Add expand options to clip (#151)
• Stitch returns the wrong bounding box in the end (#154)
• Integrate with Phylopic (#157)
• Update documentation (#158)
• geotiff driver kwarg (#160)
• downloaders break when imported as part of another module (#164)
• GBIF queries get converted (for some reason) (#165)
• Add method to download the high-res png (#171)
• Add method to generate an attribution file OR string for Phylopic (#172)
• List images by license when searching for silhouettes (#173)
• Wrong return format for names when items=1 (#174)
• Phylopic/GBIF integration (#175)
• Get the website to build for stable versions (#178)
• Using an unsupported keyword gives an error (but not the right one) (#186)
• No method for -layer (#187)
• Generate release notes that list what changes in all the packages (#189)
• Default writer should be GTiff (#190)
• Writing a layer is creating a file with no extension (#192)
• sample does not generate the expected number of background points (#194)
• cellsize returns NaN for some cells more or less at random (#198)
• Distance to observations for background points (#206)
• Check SurfaceRangeEnveloppe (#208)
• Array for a vector of layers is slow (#212)
• Fauxcurrence overload issue (#214)
• CRS (#222)
• Phylopic.jl precompiles infinitely without stopping (#223)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 12 months ago

SpeciesDistributionToolkit - Fauxcurrences-v0.1.2

Fauxcurrences Fauxcurrences-v0.1.2

Merged pull requests:

• CompatHelper: add new compat entry for Reexport at version 1, (keep existing compat) (#3) (@github-actions[bot])
• Fix the issue with NODATA using the wrong encoding (#15) (@tpoisot)
• Replace collect by values (#18) (@tpoisot)
• Fix SimpleSDMLayers tests (#19) (@tpoisot)
• CompatHelper: add new compat entry for ArchGDAL at version 0.9, (keep existing compat) (#22) (@github-actions[bot])
• Convert to WGS84 using GDAL_WARP if needed (#34) (@tpoisot)
• CompatHelper: add new compat entry for GDAL at version 1, (keep existing compat) (#41) (@github-actions[bot])
• Allow additional drivers to the geotiff writer (#47) (@tpoisot)
• [GBIF] add option to look for vector of taxa (#57) (@tpoisot)
• Update the vignette on stats (#58) (@tpoisot)
• Move the pseudo-absences to the top package and add additional methods (#59) (@tpoisot)
• CompatHelper: add new compat entry for Distances at version 0.10, (keep existing compat) (#67) (@github-actions[bot])
• CompatHelper: add new compat entry for StatsBase at version 0.33, (keep existing compat) (#69) (@github-actions[bot])
• Add additional metadata to the providers (#72) (@tpoisot)
• Add a Tables.jl interface for layers (#82) (@tpoisot)
• CompatHelper: add new compat entry for Tables at version 1, (keep existing compat) (#85) (@github-actions[bot])
• Aggregate code coverage analysis (#87) (@tpoisot)
• Work on the dataset cards (#88) (@tpoisot)
• Add some tests to SimpleSDMLayers (#89) (@tpoisot)
• Merge git tags (#92) (@tpoisot)
• [GBIF] Tables.jl (#96) (@tpoisot)
• [SimpleSDMLayers] cell size (#98) (@tpoisot)
• 📝 README (#100) (@tpoisot)
• CompatHelper: add new compat entry for GBIF at version 0.4, (keep existing compat) (#102) (@github-actions[bot])
• Make all layers broadcastable (#103) (@tpoisot)
• 🗺️ Update plotting code to work with Makie as a default (#105) (@tpoisot)
• CompatHelper: add new compat entry for SimpleSDMDatasets at version 0.1, (keep existing compat) (#108) (@github-actions[bot])
• CompatHelper: bump compat for HTTP to 1 for package GBIF, (keep existing compat) (#109) (@github-actions[bot])
• CompatHelper: add new compat entry for GBIF at version 0.4 for package Fauxcurrences, (keep existing compat) (#112) (@github-actions[bot])
• CompatHelper: bump compat for ArchGDAL to 0.10, (keep existing compat) (#114) (@github-actions[bot])
• CompatHelper: add new compat entry for MakieCore at version 0.6, (keep existing compat) (#132) (@github-actions[bot])
• CompatHelper: add new compat entry for SimpleSDMLayers at version 0.9, (keep existing compat) (#133) (@github-actions[bot])
• CompatHelper: add new compat entry for SimpleSDMLayers at version 0.9 for package Fauxcurrences, (keep existing compat) (#135) (@github-actions[bot])
• Bring Fauxcurrences back in the main package (#137) (@tpoisot)
• CompatHelper: add new compat entry for Fauxcurrences at version 0.1, (keep existing compat) (#141) (@github-actions[bot])
• Fix clipping with exact coordinates (#144) (@gabrieldansereau)
• 🐛 correct check on layer inner type (#146) (@tpoisot)
• ✨ Split a layer into tiles (#148) (@tpoisot)
• Test for clipping with natural coordinates (#152) (@gabrieldansereau)
• 🩹 SimpleSDMLayers handling of clip with coordinates on cell boundaries (#153) (@tpoisot)
• 🐛 Update the stitching code to get the right bounding box (#155) (@tpoisot)
• GBIF throws 404 (not 410) for deleted resources (#156) (@tpoisot)
• ✅ add edge case test for clip in SpeciesDistributionToolkit (#159) (@gabrieldansereau)
• compression/format kwargs for geotiffs (#161) (@gottacatchenall)
• fix typos (#162) (@spaette)
• Update the documentation (#163) (@tpoisot)
• Fix the GBIF issue for single argument queries (#166) (@tpoisot)
• Fix the naming issue when imported from a submodule (#167) (@tpoisot)
• Phylopic wrapper (#169) (@tpoisot)
• Read the GBIF enums from the API endpoints (#170) (@tpoisot)
• compat(phylopic): add compat entries (#176) (@tpoisot)
• Update the contributing guidelines (#177) (@tpoisot)
• Add GBIF/Phylopic integration (#179) (@tpoisot)
• Build website for tagged version (#180) (@tpoisot)
• CompatHelper: bump compat for StatsBase to 0.34, (keep existing compat) (#183) (@github-actions[bot])
• CompatHelper: bump compat for StatsBase to 0.34 for package Fauxcurrences, (keep existing compat) (#184) (@github-actions[bot])
• CompatHelper: bump compat for StatsBase to 0.34 for package SimpleSDMLayers, (keep existing compat) (#185) (@github-actions[bot])
• Add methods to invert a layer (#188) (@tpoisot)
• Fixes the geotiff open (#191) (@tpoisot)
• bug(datasets): keychecker fails to check some wrong arguments (#193) (@tpoisot)
• Improving WithinRadius performance (#196) (@gottacatchenall)
• Adding Offset Arrays back as a dependency (#197) (@gottacatchenall)
• Build issue on phylopic (#199) (@tpoisot)
• fix(GBIF): some records are missing a synonym field (#200) (@tpoisot)
• CompatHelper: add new compat entry for OffsetArrays at version 1, (keep existing compat) (#201) (@github-actions[bot])
• Change sample and add DistanceToEvent (#207) (@tpoisot)
• semver(layers): fix (#209) (@tpoisot)
• Bug/layers/method overwrite (#215) (@tpoisot)
• CompatHelper: add new compat entry for Statistics at version 1 for package Fauxcurrences, (keep existing compat) (#218) (@github-actions[bot])
• CompatHelper: add new compat entry for Downloads at version 1 for package SimpleSDMDatasets, (keep existing compat) (#219) (@github-actions[bot])
• CompatHelper: add new compat entry for Statistics at version 1 for package SimpleSDMLayers, (keep existing compat) (#220) (@github-actions[bot])
• CompatHelper: bump compat for MakieCore to 0.7, (keep existing compat) (#221) (@github-actions[bot])
• Phylopic pre-compilation fix (#224) (@tpoisot)
• SurfaceLike -> GridBased (#225) (@tpoisot)
• Bug/sdt/surfacelike (#226) (@tpoisot)

Closed issues:

• Reading certain tiffs with geotiff is wrong if the CRS is not WGS84 (#32)
• Allow options to ArchGDAL driver when saving Geotiff (#30)
• Add layer description to get human-readable description of layer names (#7)
• Add a function to get the URL or reference for a data provider (#8)
• Add a way to remove observations that are documented absences (#9)
• CHELSA2 NODATA is incompatible with data type (#10)
• Move pseudo-absence code to the top-level package (#11)
• Unify distance generation in Fauxcurrences and pseudo-absence code (#12)
• Update the GBIF docstrings (#13)
• Update the model cards (#14)
• Method to get the values in a layer should be values and not collect (#16)
• Fix SimpleSDMLayers tests (#17)
• Logo (#27)
• Migrate issues about possible datasets to this repo (#28)
• Clean the code handling the CRS transformation in geotiff (#35)
• The order of arguments to read/save geotiffs make no sense (#38)
• Vignette on scaling and quantiles (#48)
• Add a method to get occurences for several taxa (#50)
• The vignettes section is getting very large (#60)
• The WorldClim tests are going to fail a lot (#61)
• Find a way to aggregate the code coverage (#62)
• Surface area of cells (#93)
• Replace data frames function by a Tables.jl interface (#94)
• Prepare repo for release of new versions (#95)
• Add Boolean operations on Boolean layers (#99)
• Link to documentation in the original repositories (#101)
• Update plotting code to work with Makie as a default (#104)
• TagBot trigger issue (#140)
• Check the weight matrices in Fauxcurrences (#142)
• Wrong coordinates returned when clipping with exact coordinates (#143)
• IO not exported? (#145)
• Split a layer into tiles (#147)
• Add a test for clipping with exact coordinates (#149)
• Avoid using stride when clipping (#150)
• Add expand options to clip (#151)
• Stitch returns the wrong bounding box in the end (#154)
• Integrate with Phylopic (#157)
• Update documentation (#158)
• geotiff driver kwarg (#160)
• downloaders break when imported as part of another module (#164)
• GBIF queries get converted (for some reason) (#165)
• Add method to download the high-res png (#171)
• Add method to generate an attribution file OR string for Phylopic (#172)
• List images by license when searching for silhouettes (#173)
• Wrong return format for names when items=1 (#174)
• Phylopic/GBIF integration (#175)
• Get the website to build for stable versions (#178)
• Using an unsupported keyword gives an error (but not the right one) (#186)
• No method for -layer (#187)
• Generate release notes that list what changes in all the packages (#189)
• Default writer should be GTiff (#190)
• Writing a layer is creating a file with no extension (#192)
• sample does not generate the expected number of background points (#194)
• cellsize returns NaN for some cells more or less at random (#198)
• Distance to observations for background points (#206)
• Check SurfaceRangeEnveloppe (#208)
• Array for a vector of layers is slow (#212)
• Fauxcurrence overload issue (#214)
• CRS (#222)
• Phylopic.jl precompiles infinitely without stopping (#223)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 12 months ago

SpeciesDistributionToolkit - GBIF-v0.4.5

GBIF GBIF-v0.4.5

Merged pull requests:

• CompatHelper: add new compat entry for Reexport at version 1, (keep existing compat) (#3) (@github-actions[bot])
• Fix the issue with NODATA using the wrong encoding (#15) (@tpoisot)
• Replace collect by values (#18) (@tpoisot)
• Fix SimpleSDMLayers tests (#19) (@tpoisot)
• CompatHelper: add new compat entry for ArchGDAL at version 0.9, (keep existing compat) (#22) (@github-actions[bot])
• Convert to WGS84 using GDAL_WARP if needed (#34) (@tpoisot)
• CompatHelper: add new compat entry for GDAL at version 1, (keep existing compat) (#41) (@github-actions[bot])
• Allow additional drivers to the geotiff writer (#47) (@tpoisot)
• [GBIF] add option to look for vector of taxa (#57) (@tpoisot)
• Update the vignette on stats (#58) (@tpoisot)
• Move the pseudo-absences to the top package and add additional methods (#59) (@tpoisot)
• CompatHelper: add new compat entry for Distances at version 0.10, (keep existing compat) (#67) (@github-actions[bot])
• CompatHelper: add new compat entry for StatsBase at version 0.33, (keep existing compat) (#69) (@github-actions[bot])
• Add additional metadata to the providers (#72) (@tpoisot)
• Add a Tables.jl interface for layers (#82) (@tpoisot)
• CompatHelper: add new compat entry for Tables at version 1, (keep existing compat) (#85) (@github-actions[bot])
• Aggregate code coverage analysis (#87) (@tpoisot)
• Work on the dataset cards (#88) (@tpoisot)
• Add some tests to SimpleSDMLayers (#89) (@tpoisot)
• Merge git tags (#92) (@tpoisot)
• [GBIF] Tables.jl (#96) (@tpoisot)
• [SimpleSDMLayers] cell size (#98) (@tpoisot)
• 📝 README (#100) (@tpoisot)
• CompatHelper: add new compat entry for GBIF at version 0.4, (keep existing compat) (#102) (@github-actions[bot])
• Make all layers broadcastable (#103) (@tpoisot)
• 🗺️ Update plotting code to work with Makie as a default (#105) (@tpoisot)
• CompatHelper: add new compat entry for SimpleSDMDatasets at version 0.1, (keep existing compat) (#108) (@github-actions[bot])
• CompatHelper: bump compat for HTTP to 1 for package GBIF, (keep existing compat) (#109) (@github-actions[bot])
• CompatHelper: add new compat entry for GBIF at version 0.4 for package Fauxcurrences, (keep existing compat) (#112) (@github-actions[bot])
• CompatHelper: bump compat for ArchGDAL to 0.10, (keep existing compat) (#114) (@github-actions[bot])
• CompatHelper: add new compat entry for MakieCore at version 0.6, (keep existing compat) (#132) (@github-actions[bot])
• CompatHelper: add new compat entry for SimpleSDMLayers at version 0.9, (keep existing compat) (#133) (@github-actions[bot])
• CompatHelper: add new compat entry for SimpleSDMLayers at version 0.9 for package Fauxcurrences, (keep existing compat) (#135) (@github-actions[bot])
• Bring Fauxcurrences back in the main package (#137) (@tpoisot)
• CompatHelper: add new compat entry for Fauxcurrences at version 0.1, (keep existing compat) (#141) (@github-actions[bot])
• Fix clipping with exact coordinates (#144) (@gabrieldansereau)
• 🐛 correct check on layer inner type (#146) (@tpoisot)
• ✨ Split a layer into tiles (#148) (@tpoisot)
• Test for clipping with natural coordinates (#152) (@gabrieldansereau)
• 🩹 SimpleSDMLayers handling of clip with coordinates on cell boundaries (#153) (@tpoisot)
• 🐛 Update the stitching code to get the right bounding box (#155) (@tpoisot)
• GBIF throws 404 (not 410) for deleted resources (#156) (@tpoisot)
• ✅ add edge case test for clip in SpeciesDistributionToolkit (#159) (@gabrieldansereau)
• compression/format kwargs for geotiffs (#161) (@gottacatchenall)
• fix typos (#162) (@spaette)
• Update the documentation (#163) (@tpoisot)
• Fix the GBIF issue for single argument queries (#166) (@tpoisot)
• Fix the naming issue when imported from a submodule (#167) (@tpoisot)
• Phylopic wrapper (#169) (@tpoisot)
• Read the GBIF enums from the API endpoints (#170) (@tpoisot)
• compat(phylopic): add compat entries (#176) (@tpoisot)
• Update the contributing guidelines (#177) (@tpoisot)
• Add GBIF/Phylopic integration (#179) (@tpoisot)
• Build website for tagged version (#180) (@tpoisot)
• CompatHelper: bump compat for StatsBase to 0.34, (keep existing compat) (#183) (@github-actions[bot])
• CompatHelper: bump compat for StatsBase to 0.34 for package Fauxcurrences, (keep existing compat) (#184) (@github-actions[bot])
• CompatHelper: bump compat for StatsBase to 0.34 for package SimpleSDMLayers, (keep existing compat) (#185) (@github-actions[bot])
• Add methods to invert a layer (#188) (@tpoisot)
• Fixes the geotiff open (#191) (@tpoisot)
• bug(datasets): keychecker fails to check some wrong arguments (#193) (@tpoisot)
• Improving WithinRadius performance (#196) (@gottacatchenall)
• Adding Offset Arrays back as a dependency (#197) (@gottacatchenall)
• Build issue on phylopic (#199) (@tpoisot)
• fix(GBIF): some records are missing a synonym field (#200) (@tpoisot)
• CompatHelper: add new compat entry for OffsetArrays at version 1, (keep existing compat) (#201) (@github-actions[bot])
• Change sample and add DistanceToEvent (#207) (@tpoisot)
• semver(layers): fix (#209) (@tpoisot)
• Bug/layers/method overwrite (#215) (@tpoisot)
• CompatHelper: add new compat entry for Statistics at version 1 for package Fauxcurrences, (keep existing compat) (#218) (@github-actions[bot])
• CompatHelper: add new compat entry for Downloads at version 1 for package SimpleSDMDatasets, (keep existing compat) (#219) (@github-actions[bot])
• CompatHelper: add new compat entry for Statistics at version 1 for package SimpleSDMLayers, (keep existing compat) (#220) (@github-actions[bot])
• CompatHelper: bump compat for MakieCore to 0.7, (keep existing compat) (#221) (@github-actions[bot])
• Phylopic pre-compilation fix (#224) (@tpoisot)
• SurfaceLike -> GridBased (#225) (@tpoisot)
• Bug/sdt/surfacelike (#226) (@tpoisot)

Closed issues:

• Reading certain tiffs with geotiff is wrong if the CRS is not WGS84 (#32)
• Allow options to ArchGDAL driver when saving Geotiff (#30)
• Add layer description to get human-readable description of layer names (#7)
• Add a function to get the URL or reference for a data provider (#8)
• Add a way to remove observations that are documented absences (#9)
• CHELSA2 NODATA is incompatible with data type (#10)
• Move pseudo-absence code to the top-level package (#11)
• Unify distance generation in Fauxcurrences and pseudo-absence code (#12)
• Update the GBIF docstrings (#13)
• Update the model cards (#14)
• Method to get the values in a layer should be values and not collect (#16)
• Fix SimpleSDMLayers tests (#17)
• Migrate issues about possible datasets to this repo (#28)
• Clean the code handling the CRS transformation in geotiff (#35)
• The order of arguments to read/save geotiffs make no sense (#38)
• Vignette on scaling and quantiles (#48)
• Add a method to get occurences for several taxa (#50)
• The vignettes section is getting very large (#60)
• The WorldClim tests are going to fail a lot (#61)
• Find a way to aggregate the code coverage (#62)
• Surface area of cells (#93)
• Replace data frames function by a Tables.jl interface (#94)
• Prepare repo for release of new versions (#95)
• Add Boolean operations on Boolean layers (#99)
• Link to documentation in the original repositories (#101)
• Update plotting code to work with Makie as a default (#104)
• TagBot trigger issue (#140)
• Check the weight matrices in Fauxcurrences (#142)
• Wrong coordinates returned when clipping with exact coordinates (#143)
• IO not exported? (#145)
• Split a layer into tiles (#147)
• Add a test for clipping with exact coordinates (#149)
• Avoid using stride when clipping (#150)
• Add expand options to clip (#151)
• Stitch returns the wrong bounding box in the end (#154)
• Integrate with Phylopic (#157)
• Update documentation (#158)
• geotiff driver kwarg (#160)
• downloaders break when imported as part of another module (#164)
• GBIF queries get converted (for some reason) (#165)
• Add method to download the high-res png (#171)
• Add method to generate an attribution file OR string for Phylopic (#172)
• List images by license when searching for silhouettes (#173)
• Wrong return format for names when items=1 (#174)
• Phylopic/GBIF integration (#175)
• Get the website to build for stable versions (#178)
• Using an unsupported keyword gives an error (but not the right one) (#186)
• No method for -layer (#187)
• Default writer should be GTiff (#190)
• Writing a layer is creating a file with no extension (#192)
• sample does not generate the expected number of background points (#194)
• cellsize returns NaN for some cells more or less at random (#198)
• Distance to observations for background points (#206)
• Check SurfaceRangeEnveloppe (#208)
• Array for a vector of layers is slow (#212)
• Fauxcurrence overload issue (#214)
• CRS (#222)
• Phylopic.jl precompiles infinitely without stopping (#223)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit - v0.0.10

SpeciesDistributionToolkit v0.0.10

Diff since v0.0.9

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] over 1 year ago

SpeciesDistributionToolkit - v0.0.9

SpeciesDistributionToolkit v0.0.9

Diff since v0.0.8

Merged pull requests:

• Update the contributing guidelines (#177) (@tpoisot)
• Change sample and add DistanceToEvent (#207) (@tpoisot)

Closed issues:

• sample does not generate the expected number of background points (#194)
• Distance to observations for background points (#206)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] over 1 year ago

SpeciesDistributionToolkit - v0.0.8

SpeciesDistributionToolkit v0.0.8

Diff since v0.0.7

Closed issues:

• Using an unsupported keyword gives an error (but not the right one) (#186)

Merged pull requests:

• bug(datasets): keychecker fails to check some wrong arguments (#193) (@tpoisot)
• Improving WithinRadius performance (#196) (@gottacatchenall)
• Adding Offset Arrays back as a dependency (#197) (@gottacatchenall)
• Build issue on phylopic (#199) (@tpoisot)
• fix(GBIF): some records are missing a synonym field (#200) (@tpoisot)
• CompatHelper: add new compat entry for OffsetArrays at version 1, (keep existing compat) (#201) (@github-actions[bot])

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] over 1 year ago

SpeciesDistributionToolkit - v0.0.7

SpeciesDistributionToolkit v0.0.7

Diff since v0.0.6

Closed issues:

• No method for -layer (#187)
• Default writer should be GTiff (#190)
• Writing a layer is creating a file with no extension (#192)

Merged pull requests:

• CompatHelper: bump compat for StatsBase to 0.34, (keep existing compat) (#183) (@github-actions[bot])
• CompatHelper: bump compat for StatsBase to 0.34 for package Fauxcurrences, (keep existing compat) (#184) (@github-actions[bot])
• CompatHelper: bump compat for StatsBase to 0.34 for package SimpleSDMLayers, (keep existing compat) (#185) (@github-actions[bot])
• Add methods to invert a layer (#188) (@tpoisot)
• Fixes the geotiff open (#191) (@tpoisot)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] almost 2 years ago

SpeciesDistributionToolkit - v0.0.6

SpeciesDistributionToolkit v0.0.6

Diff since v0.0.5

Closed issues:

• Integrate with Phylopic (#157)
• downloaders break when imported as part of another module (#164)
• GBIF queries get converted (for some reason) (#165)
• Add method to download the high-res png (#171)
• Add method to generate an attribution file OR string for Phylopic (#172)
• List images by license when searching for silhouettes (#173)
• Wrong return format for names when items=1 (#174)
• Phylopic/GBIF integration (#175)
• Get the website to build for stable versions (#178)

Merged pull requests:

• Fix the GBIF issue for single argument queries (#166) (@tpoisot)
• Fix the naming issue when imported from a submodule (#167) (@tpoisot)
• Phylopic wrapper (#169) (@tpoisot)
• Read the GBIF enums from the API endpoints (#170) (@tpoisot)
• compat(phylopic): add compat entries (#176) (@tpoisot)
• Add GBIF/Phylopic integration (#179) (@tpoisot)
• Build website for tagged version (#180) (@tpoisot)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] almost 2 years ago

SpeciesDistributionToolkit - v0.0.5

SpeciesDistributionToolkit v0.0.5

Diff since v0.0.4

Closed issues:

• Split a layer into tiles (#147)
• Add a test for clipping with exact coordinates (#149)
• Avoid using stride when clipping (#150)
• Add expand options to clip (#151)
• Stitch returns the wrong bounding box in the end (#154)
• Update documentation (#158)
• geotiff driver kwarg (#160)

Merged pull requests:

• ✨ Split a layer into tiles (#148) (@tpoisot)
• Test for clipping with natural coordinates (#152) (@gabrieldansereau)
• 🩹 SimpleSDMLayers handling of clip with coordinates on cell boundaries (#153) (@tpoisot)
• 🐛 Update the stitching code to get the right bounding box (#155) (@tpoisot)
• GBIF throws 404 (not 410) for deleted resources (#156) (@tpoisot)
• ✅ add edge case test for clip in SpeciesDistributionToolkit (#159) (@gabrieldansereau)
• compression/format kwargs for geotiffs (#161) (@gottacatchenall)
• fix typos (#162) (@spaette)
• Update the documentation (#163) (@tpoisot)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] about 2 years ago

SpeciesDistributionToolkit - v0.0.4

SpeciesDistributionToolkit v0.0.4

Diff since v0.0.3

Closed issues:

• IO not exported? (#145)

Merged pull requests:

• 🐛 correct check on layer inner type (#146) (@tpoisot)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] about 2 years ago

SpeciesDistributionToolkit - v0.0.3

SpeciesDistributionToolkit v0.0.3

Diff since v0.0.2

Closed issues:

• Wrong coordinates returned when clipping with exact coordinates (#143)

Merged pull requests:

• Fix clipping with exact coordinates (#144) (@gabrieldansereau)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] about 2 years ago

SpeciesDistributionToolkit - v0.0.2

SpeciesDistributionToolkit v0.0.2

Diff since v0.0.1

Closed issues:

• Check the weight matrices in Fauxcurrences (#142)

Merged pull requests:

• CompatHelper: add new compat entry for Fauxcurrences at version 0.1, (keep existing compat) (#141) (@github-actions[bot])

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] about 2 years ago

SpeciesDistributionToolkit - v0.0.1

SpeciesDistributionToolkit v0.0.1

Closed issues:

• Reading certain tiffs with geotiff is wrong if the CRS is not WGS84 (#32)
• Allow options to ArchGDAL driver when saving Geotiff (#30)
• Add layer description to get human-readable description of layer names (#7)
• Add a function to get the URL or reference for a data provider (#8)
• Add a way to remove observations that are documented absences (#9)
• CHELSA2 NODATA is incompatible with data type (#10)
• Move pseudo-absence code to the top-level package (#11)
• Unify distance generation in Fauxcurrences and pseudo-absence code (#12)
• Update the GBIF docstrings (#13)
• Update the model cards (#14)
• Method to get the values in a layer should be values and not collect (#16)
• Fix SimpleSDMLayers tests (#17)
• Migrate issues about possible datasets to this repo (#28)
• Clean the code handling the CRS transformation in geotiff (#35)
• The order of arguments to read/save geotiffs make no sense (#38)
• Vignette on scaling and quantiles (#48)
• Add a method to get occurences for several taxa (#50)
• The vignettes section is getting very large (#60)
• The WorldClim tests are going to fail a lot (#61)
• Find a way to aggregate the code coverage (#62)
• Surface area of cells (#93)
• Replace data frames function by a Tables.jl interface (#94)
• Prepare repo for release of new versions (#95)
• Add Boolean operations on Boolean layers (#99)
• Link to documentation in the original repositories (#101)
• Update plotting code to work with Makie as a default (#104)

Merged pull requests:

• CompatHelper: add new compat entry for Reexport at version 1, (keep existing compat) (#3) (@github-actions[bot])
• Fix the issue with NODATA using the wrong encoding (#15) (@tpoisot)
• Replace collect by values (#18) (@tpoisot)
• Fix SimpleSDMLayers tests (#19) (@tpoisot)
• CompatHelper: add new compat entry for ArchGDAL at version 0.9, (keep existing compat) (#22) (@github-actions[bot])
• Convert to WGS84 using GDAL_WARP if needed (#34) (@tpoisot)
• CompatHelper: add new compat entry for GDAL at version 1, (keep existing compat) (#41) (@github-actions[bot])
• Allow additional drivers to the geotiff writer (#47) (@tpoisot)
• [GBIF] add option to look for vector of taxa (#57) (@tpoisot)
• Update the vignette on stats (#58) (@tpoisot)
• Move the pseudo-absences to the top package and add additional methods (#59) (@tpoisot)
• CompatHelper: add new compat entry for Distances at version 0.10, (keep existing compat) (#67) (@github-actions[bot])
• CompatHelper: add new compat entry for StatsBase at version 0.33, (keep existing compat) (#69) (@github-actions[bot])
• Add additional metadata to the providers (#72) (@tpoisot)
• Add a Tables.jl interface for layers (#82) (@tpoisot)
• CompatHelper: add new compat entry for Tables at version 1, (keep existing compat) (#85) (@github-actions[bot])
• Aggregate code coverage analysis (#87) (@tpoisot)
• Work on the dataset cards (#88) (@tpoisot)
• Add some tests to SimpleSDMLayers (#89) (@tpoisot)
• Merge git tags (#92) (@tpoisot)
• [GBIF] Tables.jl (#96) (@tpoisot)
• [SimpleSDMLayers] cell size (#98) (@tpoisot)
• 📝 README (#100) (@tpoisot)
• CompatHelper: add new compat entry for GBIF at version 0.4, (keep existing compat) (#102) (@github-actions[bot])
• Make all layers broadcastable (#103) (@tpoisot)
• 🗺️ Update plotting code to work with Makie as a default (#105) (@tpoisot)
• CompatHelper: add new compat entry for SimpleSDMDatasets at version 0.1, (keep existing compat) (#108) (@github-actions[bot])
• CompatHelper: bump compat for HTTP to 1 for package GBIF, (keep existing compat) (#109) (@github-actions[bot])
• CompatHelper: add new compat entry for GBIF at version 0.4 for package Fauxcurrences, (keep existing compat) (#112) (@github-actions[bot])
• CompatHelper: bump compat for ArchGDAL to 0.10, (keep existing compat) (#114) (@github-actions[bot])
• CompatHelper: add new compat entry for MakieCore at version 0.6, (keep existing compat) (#132) (@github-actions[bot])
• CompatHelper: add new compat entry for SimpleSDMLayers at version 0.9, (keep existing compat) (#133) (@github-actions[bot])

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] about 2 years ago