SpeciesDistributionToolkit - v1.9.0

SpeciesDistributionToolkit v1.9.0

Diff since v1.8.2

This release has been identified as a backport.
Automated changelogs for backports tend to be wildly incorrect.
Therefore, the list of issues and pull requests is hidden.

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 2 months ago

SpeciesDistributionToolkit - SimpleSDMLayers-v1.4.1

SimpleSDMLayers SimpleSDMLayers-v1.4.1

Diff since SimpleSDMLayers-v1.4.0

• added an overload for reconstruct to the MultivariateStats extension
• added overloads for clamp and clamp!
• added an overload for the ÷ operator
• added an overload for Matrix on a vector of layers
• added reconcile and reconcile!

Merged pull requests:

• CompatHelper: bump compat for JSON to 1 for package OccurrencesInterface, (keep existing compat) (#510) (@github-actions[bot])
• Fix the bug of attempting to plot an empty polygon (#558) (@tpoisot)
• Handle projection function in SDT + graticule extension (#559) (@tpoisot)
• Add support for bivariate and VSUP palettes (#561) (@tpoisot)
• Improved color support in Phylopic (#563) (@tpoisot)
• Phylopic overwritten method (#568) (@tpoisot)
• OccurrencesInterface support in SDeMo (#570) (@tpoisot)
• Add more points to boundingbox when clipping polygons (#572) (@tpoisot)
• Support for PCA reconstruction in layers (#575) (@tpoisot)

Closed issues:

• Add bivariate and trivariate plots (#124)
• MERRAClim (#418)
• Add a reconcile / reconcile! method for stacks of layers (#528)
• Empty polygons break plotting (#554)
• Update SDT to rely more on the projection mechanism (#557)
• Method overwriting (#565)
• Clipping a polygon with a boundingbox should first add more points to the boundingbox (#567)
• AbstractSDM should implement OccurencesInterface (#569)
• Update the MultivariateStats extension to allow reconstruct (#574)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 2 months ago

SpeciesDistributionToolkit - SimpleSDMPolygons-v1.3.2

SimpleSDMPolygons SimpleSDMPolygons-v1.3.2

Diff since SimpleSDMPolygons-v1.3.1

• changed the polygon generation from a boundingbox in order to generate more points when clipping [#567]

Merged pull requests:

• CompatHelper: bump compat for JSON to 1 for package OccurrencesInterface, (keep existing compat) (#510) (@github-actions[bot])
• Handle projection function in SDT + graticule extension (#559) (@tpoisot)
• Add support for bivariate and VSUP palettes (#561) (@tpoisot)
• Improved color support in Phylopic (#563) (@tpoisot)
• Phylopic overwritten method (#568) (@tpoisot)
• OccurrencesInterface support in SDeMo (#570) (@tpoisot)
• Add more points to boundingbox when clipping polygons (#572) (@tpoisot)

Closed issues:

• Add bivariate and trivariate plots (#124)
• Update SDT to rely more on the projection mechanism (#557)
• Method overwriting (#565)
• Clipping a polygon with a boundingbox should first add more points to the boundingbox (#567)
• AbstractSDM should implement OccurencesInterface (#569)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 2 months ago

SpeciesDistributionToolkit - OccurrencesInterface-v1.2.2

OccurrencesInterface OccurrencesInterface-v1.2.2

Diff since OccurrencesInterface-v1.2.1

Merged pull requests:

• Update plotting extension to Makie for Phylopic (#468) (@tpoisot)
• Doc updates pre CSEE workshop (#473) (@tpoisot)
• Fix masking of occurrences by feature collections (#478) (@tpoisot)
• Bug fixes for SimpleSDMPolygons (#482) (@tpoisot)
• Fix the bug when masking a layer by a featurecollection (#483) (@tpoisot)
• Fix some bugs in SimpleSDMPolygons (#487) (@tpoisot)
• Experiments with AdaBoost (#488) (@tpoisot)
• Adding operations to SimpleSDMPolygons (#490) (@gottacatchenall)
• Support Makie v0.24 in SimpleSDMLayers (#491) (@tpoisot)
• Add Phylopic dep for 0.24 (#492) (@tpoisot)
• Clipping Polygons w/ Bounding Boxes (#495) (@gottacatchenall)
• boundingbox for MultiPolygon hotfix (#496) (@gottacatchenall)
• Training and thresholding improvements for SDeMo (#498) (@tpoisot)
• Adding CRS to construct polygons (#500) (@gottacatchenall)
• Explict specification of delimiter to GBIF CSV.File (#501) (@jeetsukumaran)
• Update to make decision stubs actually work (#502) (@tpoisot)
• CompatHelper: bump compat for JSON to 1 for package OccurrencesInterface, (keep existing compat) (#510) (@github-actions[bot])
• SDeMo: PCA and Logistic automatically apply a z-score (#514) (@tpoisot)
• Fix PCA bug (#515) (@tpoisot)
• Fix for decision stumps (#518) (@tpoisot)
• Calibration improvements (#519) (@tpoisot)
• SDeMo v1.6.1 (#524) (@tpoisot)
• Occurrences with missing coordinates are handled during boundingbox (#526) (@tpoisot)
• Add a function to use the distance in degrees to generate pseudo-absences (#527) (@tpoisot)
• AdaBoost learning rate (#531) (@tpoisot)
• AdaBoost tweaks + rebalanced LOOCV (#532) (@tpoisot)
• Add admin areas from ESRI (#533) (@tpoisot)
• Add support for coordinates of instances in SDMs (#535) (@tpoisot)
• Update CHELSA to the new location (#537) (@tpoisot)
• Read scale and offset from geotiff layers (#541) (@tpoisot)
• Next version of SDeMo (#542) (@tpoisot)
• Add a trained label to SDMs (#543) (@tpoisot)
• Model components can be changed (just like variables) (#544) (@tpoisot)
• Conformal for SDeMo (#546) (@tpoisot)
• Documentation overhaul and SDeMo 1.8 integration (#550) (@tpoisot)
• Pretty dramatic performance improvement for sliding windows (#552) (@tpoisot)
• Allow reference value to be bassed to the summary function in sliding windows (#553) (@tpoisot)
• More general handing of SRS in layers (#556) (@tpoisot)
• Fix the bug of attempting to plot an empty polygon (#558) (@tpoisot)
• Handle projection function in SDT + graticule extension (#559) (@tpoisot)
• Add support for bivariate and VSUP palettes (#561) (@tpoisot)
• Improved color support in Phylopic (#563) (@tpoisot)
• Phylopic overwritten method (#568) (@tpoisot)

Closed issues:

• Add global land use data projections (#31)
• Add bivariate and trivariate plots (#124)
• Calling boundingbox on a set of occurrences should ignore the occurrences with no coordinates (#409)
• CrossValidation type (#420)
• Cannot mask occurrences by a feature collection (#476)
• Masking a layer with a FeatureCollection is not working (#477)
• Bugfixes for polygons (#479)
• Resolv should be Resolve (fix + alias for compatibility) (#480)
• EPA polygons (I think I know why) are not working (#481)
• Cleanup the reference section of the package (#484)
• EPA polygons are on the side (#485)
• First polygon plotted by Makie has the wrong attributes (#486)
• No boundinngbox method for multipolygons (#494)
• Improvements to model thresholding (#497)
• Clipped polygons cannot be used to mask layers (#499)
• bug in virtual species documentation (#511)
• vcat doesn't work for MultiPolygons (#512)
• Update the SDM type with a trained flag (#513)
• Unfortunately, projections (#516)
• Decision stumps make weird predictions (#517)
• Add weights to isotonic calibration (#521)
• Platt calibration is very slow (#522)
• Add a link keyword to predict (#525)
• Re-balanced LOOCV (#529)
• Learning rate for AdaBoost (#530)
• CHELSA2 has been updated (#536)
• Conformal prediction (#538)
• Add a classifier! and transformer! method to change a model (#539)
• Check if layers have scale and offset info when reading from geotiff (#540)
• Add a Makie extension to SDeMo to plot instances (#545)
• Add integration between Conformal and layers (#547)
• Empty polygons break plotting (#554)
• PROJ4 can lead to loss of info (#555)
• Update SDT to rely more on the projection mechanism (#557)
• Method overwriting (#565)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 3 months ago

SpeciesDistributionToolkit - Phylopic-v1.0.4

Phylopic Phylopic-v1.0.4

Diff since Phylopic-v1.0.3

Merged pull requests:

• Phylopic overwritten method (#568) (@tpoisot)

Closed issues:

• Method overwriting (#565)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 3 months ago

SpeciesDistributionToolkit - Phylopic-v1.0.3

Phylopic Phylopic-v1.0.3

Diff since Phylopic-v1.0.2

Merged pull requests:

• Support Makie v0.24 in SimpleSDMLayers (#491) (@tpoisot)
• Clipping Polygons w/ Bounding Boxes (#495) (@gottacatchenall)
• boundingbox for MultiPolygon hotfix (#496) (@gottacatchenall)
• Training and thresholding improvements for SDeMo (#498) (@tpoisot)
• Adding CRS to construct polygons (#500) (@gottacatchenall)
• Explict specification of delimiter to GBIF CSV.File (#501) (@jeetsukumaran)
• Update to make decision stubs actually work (#502) (@tpoisot)
• SDeMo: PCA and Logistic automatically apply a z-score (#514) (@tpoisot)
• Fix PCA bug (#515) (@tpoisot)
• Fix for decision stumps (#518) (@tpoisot)
• Calibration improvements (#519) (@tpoisot)
• SDeMo v1.6.1 (#524) (@tpoisot)
• Occurrences with missing coordinates are handled during boundingbox (#526) (@tpoisot)
• Add a function to use the distance in degrees to generate pseudo-absences (#527) (@tpoisot)
• AdaBoost learning rate (#531) (@tpoisot)
• AdaBoost tweaks + rebalanced LOOCV (#532) (@tpoisot)
• Add admin areas from ESRI (#533) (@tpoisot)
• Add support for coordinates of instances in SDMs (#535) (@tpoisot)
• Update CHELSA to the new location (#537) (@tpoisot)
• Read scale and offset from geotiff layers (#541) (@tpoisot)
• Next version of SDeMo (#542) (@tpoisot)
• Add a trained label to SDMs (#543) (@tpoisot)
• Model components can be changed (just like variables) (#544) (@tpoisot)
• Conformal for SDeMo (#546) (@tpoisot)
• Documentation overhaul and SDeMo 1.8 integration (#550) (@tpoisot)
• Pretty dramatic performance improvement for sliding windows (#552) (@tpoisot)
• Allow reference value to be bassed to the summary function in sliding windows (#553) (@tpoisot)
• More general handing of SRS in layers (#556) (@tpoisot)
• Fix the bug of attempting to plot an empty polygon (#558) (@tpoisot)
• Handle projection function in SDT + graticule extension (#559) (@tpoisot)
• Add support for bivariate and VSUP palettes (#561) (@tpoisot)
• Improved color support in Phylopic (#563) (@tpoisot)

Closed issues:

• Add global land use data projections (#31)
• Add bivariate and trivariate plots (#124)
• Calling boundingbox on a set of occurrences should ignore the occurrences with no coordinates (#409)
• CrossValidation type (#420)
• No boundinngbox method for multipolygons (#494)
• Improvements to model thresholding (#497)
• Clipped polygons cannot be used to mask layers (#499)
• bug in virtual species documentation (#511)
• vcat doesn't work for MultiPolygons (#512)
• Update the SDM type with a trained flag (#513)
• Unfortunately, projections (#516)
• Decision stumps make weird predictions (#517)
• Add weights to isotonic calibration (#521)
• Platt calibration is very slow (#522)
• Add a link keyword to predict (#525)
• Re-balanced LOOCV (#529)
• Learning rate for AdaBoost (#530)
• CHELSA2 has been updated (#536)
• Conformal prediction (#538)
• Add a classifier! and transformer! method to change a model (#539)
• Check if layers have scale and offset info when reading from geotiff (#540)
• Add a Makie extension to SDeMo to plot instances (#545)
• Add integration between Conformal and layers (#547)
• Empty polygons break plotting (#554)
• PROJ4 can lead to loss of info (#555)
• Update SDT to rely more on the projection mechanism (#557)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 3 months ago

SpeciesDistributionToolkit - v1.8.2

SpeciesDistributionToolkit v1.8.2

Diff since v1.8.1

Merged pull requests:

• Add support for bivariate and VSUP palettes (#561) (@tpoisot)

Closed issues:

• Add bivariate and trivariate plots (#124)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 3 months ago

SpeciesDistributionToolkit - v1.8.1

SpeciesDistributionToolkit v1.8.1

Diff since v1.8.0

Merged pull requests:

• More general handing of SRS in layers (#556) (@tpoisot)
• Fix the bug of attempting to plot an empty polygon (#558) (@tpoisot)
• Handle projection function in SDT + graticule extension (#559) (@tpoisot)

Closed issues:

• Empty polygons break plotting (#554)
• PROJ4 can lead to loss of info (#555)
• Update SDT to rely more on the projection mechanism (#557)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 3 months ago

SpeciesDistributionToolkit - SimpleSDMPolygons-v1.3.1

SimpleSDMPolygons SimpleSDMPolygons-v1.3.1

Diff since SimpleSDMPolygons-v1.3.0

Merged pull requests:

• Add support for coordinates of instances in SDMs (#535) (@tpoisot)
• Update CHELSA to the new location (#537) (@tpoisot)
• Read scale and offset from geotiff layers (#541) (@tpoisot)
• Next version of SDeMo (#542) (@tpoisot)
• Add a trained label to SDMs (#543) (@tpoisot)
• Model components can be changed (just like variables) (#544) (@tpoisot)
• Conformal for SDeMo (#546) (@tpoisot)
• Documentation overhaul and SDeMo 1.8 integration (#550) (@tpoisot)
• Pretty dramatic performance improvement for sliding windows (#552) (@tpoisot)
• Allow reference value to be bassed to the summary function in sliding windows (#553) (@tpoisot)
• More general handing of SRS in layers (#556) (@tpoisot)
• Fix the bug of attempting to plot an empty polygon (#558) (@tpoisot)

Closed issues:

• Calling boundingbox on a set of occurrences should ignore the occurrences with no coordinates (#409)
• Update the SDM type with a trained flag (#513)
• Unfortunately, projections (#516)
• Add a link keyword to predict (#525)
• CHELSA2 has been updated (#536)
• Conformal prediction (#538)
• Add a classifier! and transformer! method to change a model (#539)
• Check if layers have scale and offset info when reading from geotiff (#540)
• Add a Makie extension to SDeMo to plot instances (#545)
• Add integration between Conformal and layers (#547)
• Empty polygons break plotting (#554)
• PROJ4 can lead to loss of info (#555)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 3 months ago

SpeciesDistributionToolkit - SimpleSDMLayers-v1.4.0

SimpleSDMLayers SimpleSDMLayers-v1.4.0

Diff since SimpleSDMLayers-v1.3.5

Merged pull requests:

• Documentation overhaul and SDeMo 1.8 integration (#550) (@tpoisot)
• More general handing of SRS in layers (#556) (@tpoisot)

Closed issues:

• Calling boundingbox on a set of occurrences should ignore the occurrences with no coordinates (#409)
• Unfortunately, projections (#516)
• Add integration between Conformal and layers (#547)
• PROJ4 can lead to loss of info (#555)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 3 months ago

SpeciesDistributionToolkit - v1.8.0

SpeciesDistributionToolkit v1.8.0

Diff since v1.7.2

Merged pull requests:

• Add a function to use the distance in degrees to generate pseudo-absences (#527) (@tpoisot)
• AdaBoost learning rate (#531) (@tpoisot)
• AdaBoost tweaks + rebalanced LOOCV (#532) (@tpoisot)
• Add admin areas from ESRI (#533) (@tpoisot)
• Add support for coordinates of instances in SDMs (#535) (@tpoisot)
• Update CHELSA to the new location (#537) (@tpoisot)
• Read scale and offset from geotiff layers (#541) (@tpoisot)
• Next version of SDeMo (#542) (@tpoisot)
• Add a trained label to SDMs (#543) (@tpoisot)
• Model components can be changed (just like variables) (#544) (@tpoisot)
• Conformal for SDeMo (#546) (@tpoisot)
• Documentation overhaul and SDeMo 1.8 integration (#550) (@tpoisot)
• Pretty dramatic performance improvement for sliding windows (#552) (@tpoisot)
• Allow reference value to be bassed to the summary function in sliding windows (#553) (@tpoisot)

Closed issues:

• Add global land use data projections (#31)
• Calling boundingbox on a set of occurrences should ignore the occurrences with no coordinates (#409)
• Update the SDM type with a trained flag (#513)
• Unfortunately, projections (#516)
• Add a link keyword to predict (#525)
• Re-balanced LOOCV (#529)
• Learning rate for AdaBoost (#530)
• CHELSA2 has been updated (#536)
• Conformal prediction (#538)
• Add a classifier! and transformer! method to change a model (#539)
• Check if layers have scale and offset info when reading from geotiff (#540)
• Add a Makie extension to SDeMo to plot instances (#545)
• Add integration between Conformal and layers (#547)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 3 months ago

SpeciesDistributionToolkit - SimpleSDMLayers-v1.3.5

SimpleSDMLayers SimpleSDMLayers-v1.3.5

Diff since SimpleSDMLayers-v1.3.4

Merged pull requests:

• Allow reference value to be bassed to the summary function in sliding windows (#553) (@tpoisot)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 3 months ago

SpeciesDistributionToolkit - SimpleSDMLayers-v1.3.4

SimpleSDMLayers SimpleSDMLayers-v1.3.4

Diff since SimpleSDMLayers-v1.3.3

Merged pull requests:

• Add support for coordinates of instances in SDMs (#535) (@tpoisot)
• Next version of SDeMo (#542) (@tpoisot)
• Add a trained label to SDMs (#543) (@tpoisot)
• Model components can be changed (just like variables) (#544) (@tpoisot)
• Conformal for SDeMo (#546) (@tpoisot)
• Pretty dramatic performance improvement for sliding windows (#552) (@tpoisot)

Closed issues:

• Update the SDM type with a trained flag (#513)
• Add a link keyword to predict (#525)
• Conformal prediction (#538)
• Add a classifier! and transformer! method to change a model (#539)
• Add a Makie extension to SDeMo to plot instances (#545)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 3 months ago

SpeciesDistributionToolkit - SDeMo-v1.8.0

SDeMo SDeMo-v1.8.0

Diff since SDeMo-v1.7.1

Merged pull requests:

• Add admin areas from ESRI (#533) (@tpoisot)
• Add support for coordinates of instances in SDMs (#535) (@tpoisot)
• Update CHELSA to the new location (#537) (@tpoisot)
• Read scale and offset from geotiff layers (#541) (@tpoisot)
• Next version of SDeMo (#542) (@tpoisot)
• Add a trained label to SDMs (#543) (@tpoisot)
• Model components can be changed (just like variables) (#544) (@tpoisot)
• Conformal for SDeMo (#546) (@tpoisot)

Closed issues:

• Add global land use data projections (#31)
• Update the SDM type with a trained flag (#513)
• Add a link keyword to predict (#525)
• CHELSA2 has been updated (#536)
• Conformal prediction (#538)
• Add a classifier! and transformer! method to change a model (#539)
• Check if layers have scale and offset info when reading from geotiff (#540)
• Add a Makie extension to SDeMo to plot instances (#545)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 3 months ago

SpeciesDistributionToolkit - SimpleSDMLayers-v1.3.3

SimpleSDMLayers SimpleSDMLayers-v1.3.3

Diff since SimpleSDMLayers-v1.3.2

Merged pull requests:

• Clipping Polygons w/ Bounding Boxes (#495) (@gottacatchenall)
• boundingbox for MultiPolygon hotfix (#496) (@gottacatchenall)
• Training and thresholding improvements for SDeMo (#498) (@tpoisot)
• Adding CRS to construct polygons (#500) (@gottacatchenall)
• Explict specification of delimiter to GBIF CSV.File (#501) (@jeetsukumaran)
• Update to make decision stubs actually work (#502) (@tpoisot)
• SDeMo: PCA and Logistic automatically apply a z-score (#514) (@tpoisot)
• Fix PCA bug (#515) (@tpoisot)
• Fix for decision stumps (#518) (@tpoisot)
• Calibration improvements (#519) (@tpoisot)
• SDeMo v1.6.1 (#524) (@tpoisot)
• Occurrences with missing coordinates are handled during boundingbox (#526) (@tpoisot)
• Add a function to use the distance in degrees to generate pseudo-absences (#527) (@tpoisot)
• AdaBoost learning rate (#531) (@tpoisot)
• AdaBoost tweaks + rebalanced LOOCV (#532) (@tpoisot)
• Add admin areas from ESRI (#533) (@tpoisot)
• Update CHELSA to the new location (#537) (@tpoisot)
• Read scale and offset from geotiff layers (#541) (@tpoisot)

Closed issues:

• Add global land use data projections (#31)
• CrossValidation type (#420)
• No boundinngbox method for multipolygons (#494)
• Improvements to model thresholding (#497)
• Clipped polygons cannot be used to mask layers (#499)
• bug in virtual species documentation (#511)
• vcat doesn't work for MultiPolygons (#512)
• Decision stumps make weird predictions (#517)
• Add weights to isotonic calibration (#521)
• Platt calibration is very slow (#522)
• Re-balanced LOOCV (#529)
• Learning rate for AdaBoost (#530)
• CHELSA2 has been updated (#536)
• Check if layers have scale and offset info when reading from geotiff (#540)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 3 months ago

SpeciesDistributionToolkit - Fauxcurrences-v0.1.1

Fauxcurrences Fauxcurrences-v0.1.1

This release has been identified as a backport.
Automated changelogs for backports tend to be wildly incorrect.
Therefore, the list of issues and pull requests is hidden.

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 3 months ago

SpeciesDistributionToolkit - Fauxcurrences-v0.0.1

Fauxcurrences Fauxcurrences-v0.0.1

This release has been identified as a backport.
Automated changelogs for backports tend to be wildly incorrect.
Therefore, the list of issues and pull requests is hidden.

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 3 months ago

SpeciesDistributionToolkit - Phylopic-v0.0.4

Phylopic Phylopic-v0.0.4

This release has been identified as a backport.
Automated changelogs for backports tend to be wildly incorrect.
Therefore, the list of issues and pull requests is hidden.

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 3 months ago

SpeciesDistributionToolkit - Phylopic-v0.0.3

Phylopic Phylopic-v0.0.3

This release has been identified as a backport.
Automated changelogs for backports tend to be wildly incorrect.
Therefore, the list of issues and pull requests is hidden.

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 3 months ago

SpeciesDistributionToolkit - Phylopic-v0.0.2

Phylopic Phylopic-v0.0.2

This release has been identified as a backport.
Automated changelogs for backports tend to be wildly incorrect.
Therefore, the list of issues and pull requests is hidden.

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 3 months ago

SpeciesDistributionToolkit - SimpleSDMDatasets-v1.0.4

SimpleSDMDatasets SimpleSDMDatasets-v1.0.4

Diff since SimpleSDMDatasets-v1.0.3

Merged pull requests:

• Download API for GBIF (#323) (@tpoisot)
• Make logistic regression more memory efficient (#399) (@tpoisot)
• Automatically link to issues from the changelog (#403) (@tpoisot)
• PseudoAbsences.jl (#404) (@tpoisot)
• Variable selection improvements (#410) (@tpoisot)
• SDT new version with pseudo absences (#413) (@tpoisot)
• Bug in sampling from Bool layers (#415) (@tpoisot)
• SimpleSDMPolygons (#417) (@gottacatchenall)
• Load and save occurrences from JSON files (#421) (@tpoisot)
• Default data and plotting for OccInt (#423) (@tpoisot)
• Remove occurrences plotting from SDT (#424) (@tpoisot)
• Fix the ways elements are collected from GBIFRecords (#425) (@tpoisot)
• semver(sdt): v1.6.0 with SimpleSDMPolygons (#427) (@gottacatchenall)
• Makie for layers (#428) (@tpoisot)
• SimpleSDMPolygons with re-exports from datasets (#429) (@tpoisot)
• SDMPolygons Makie.lines (#434) (@gottacatchenall)
• Phylopic v1 (#435) (@tpoisot)
• Polygons: Makie.lines a boundingbox (#437) (@gottacatchenall)
• GADM URL Typo (#440) (@gottacatchenall)
• SDMPolygons Makie extension supporting lines! and poly! without axis argument (#441) (@gottacatchenall)
• Release SDT post Phylopic 1 (#444) (@tpoisot)
• Fix various occint bugs (#447) (@tpoisot)
• Add bioregions from OneEarth (#448) (@tpoisot)
• Add bibliography to the documentation (#450) (@tpoisot)
• Fix GeoInterface implementation for (multi) polygons (#451) (@asinghvi17)
• OneEarth CSV Path Fix (#453) (@gottacatchenall)
• SimpleSDMPolygons docs + tests (#454) (@tpoisot)
• Replace MakieCore by Makie for the layers plotting extensions (#456) (@github-actions[bot])
• Variable selection checkpointing issue fixed (#459) (@tpoisot)
• Iteration over occurrences (#461) (@tpoisot)
• Replace MakieCore by Makie in OccurrencesInterface (#464) (@tpoisot)
• Change plotting package for polygons to Makie (#467) (@tpoisot)
• Update plotting extension to Makie for Phylopic (#468) (@tpoisot)
• Doc updates pre CSEE workshop (#473) (@tpoisot)
• Fix masking of occurrences by feature collections (#478) (@tpoisot)
• Bug fixes for SimpleSDMPolygons (#482) (@tpoisot)
• Fix the bug when masking a layer by a featurecollection (#483) (@tpoisot)
• Fix some bugs in SimpleSDMPolygons (#487) (@tpoisot)
• Experiments with AdaBoost (#488) (@tpoisot)
• Adding operations to SimpleSDMPolygons (#490) (@gottacatchenall)
• Support Makie v0.24 in SimpleSDMLayers (#491) (@tpoisot)
• Add Phylopic dep for 0.24 (#492) (@tpoisot)
• Clipping Polygons w/ Bounding Boxes (#495) (@gottacatchenall)
• boundingbox for MultiPolygon hotfix (#496) (@gottacatchenall)
• Training and thresholding improvements for SDeMo (#498) (@tpoisot)
• Adding CRS to construct polygons (#500) (@gottacatchenall)
• Explict specification of delimiter to GBIF CSV.File (#501) (@jeetsukumaran)
• Update to make decision stubs actually work (#502) (@tpoisot)
• SDeMo: PCA and Logistic automatically apply a z-score (#514) (@tpoisot)
• Fix PCA bug (#515) (@tpoisot)
• Fix for decision stumps (#518) (@tpoisot)
• Calibration improvements (#519) (@tpoisot)
• SDeMo v1.6.1 (#524) (@tpoisot)
• Occurrences with missing coordinates are handled during boundingbox (#526) (@tpoisot)
• Add a function to use the distance in degrees to generate pseudo-absences (#527) (@tpoisot)
• AdaBoost learning rate (#531) (@tpoisot)
• AdaBoost tweaks + rebalanced LOOCV (#532) (@tpoisot)
• Add admin areas from ESRI (#533) (@tpoisot)
• Update CHELSA to the new location (#537) (@tpoisot)

Closed issues:

• Add global land use data projections (#31)
• Ecoregions (#49)
• MLJ integration (#83)
• Use the resolve endpoint to match GBIF (#181)
• Add a benchmark that runs on PRs (#300)
• Download API for GBIF (#308)
• Tweaks to the polygon masking vignette (#398)
• Variable selection accidentally resets the model (#400)
• Add issue reference in the changelogs (#401)
• Split pseudo absences code (#402)
• Add variable selection for bagging models (#405)
• Add variable selection for ensemble models (#406)
• Add a reclassify function (#407)
• Logistic regression should de-mean the data (#408)
• New version using PseudoAbsences (#411)
• Sampling from Boolean layers is wrong (#414)
• Cellsize was useful... (#416)
• CrossValidation type (#420)
• Move plotting function in SimpleSDMLayers (#422)
• Documentation update for OccurrencesInterface (#426)
• Phylopic v1 when? (#430)
• Add methods to do lines in addition to poly (#431)
• Some demo occurrences in OccurrencesInterface are wrong (#432)
• Boundingbox for SimpleSDMPolygons (#433)
• Typo in GADM url in SDMPolygons (#438)
• OneEarth ecoregions (#442)
• Indexing Polygons based on properties (#449)
• Can't tag new SimpleSDMPolygons release (#452)
• Support iteration for AbstractOccurrences (#460)
• Cannot mask occurrences by a feature collection (#476)
• Masking a layer with a FeatureCollection is not working (#477)
• Bugfixes for polygons (#479)
• Resolv should be Resolve (fix + alias for compatibility) (#480)
• EPA polygons (I think I know why) are not working (#481)
• Cleanup the reference section of the package (#484)
• EPA polygons are on the side (#485)
• First polygon plotted by Makie has the wrong attributes (#486)
• No boundinngbox method for multipolygons (#494)
• Improvements to model thresholding (#497)
• Clipped polygons cannot be used to mask layers (#499)
• bug in virtual species documentation (#511)
• vcat doesn't work for MultiPolygons (#512)
• Decision stumps make weird predictions (#517)
• Add weights to isotonic calibration (#521)
• Platt calibration is very slow (#522)
• Re-balanced LOOCV (#529)
• Learning rate for AdaBoost (#530)
• CHELSA2 has been updated (#536)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 3 months ago

SpeciesDistributionToolkit - SimpleSDMDatasets-v0.1.2

SimpleSDMDatasets SimpleSDMDatasets-v0.1.2

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Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 3 months ago

SpeciesDistributionToolkit - SimpleSDMLayers-v0.9.5

SimpleSDMLayers SimpleSDMLayers-v0.9.5

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Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 3 months ago

SpeciesDistributionToolkit - SimpleSDMLayers-v0.9.4

SimpleSDMLayers SimpleSDMLayers-v0.9.4

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Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 3 months ago

SpeciesDistributionToolkit - SimpleSDMLayers-v0.9.3

SimpleSDMLayers SimpleSDMLayers-v0.9.3

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Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 3 months ago

SpeciesDistributionToolkit - SimpleSDMLayers-v0.8.3

SimpleSDMLayers SimpleSDMLayers-v0.8.3

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Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 4 months ago

SpeciesDistributionToolkit - SimpleSDMLayers-v0.8.2

SimpleSDMLayers SimpleSDMLayers-v0.8.2

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Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 4 months ago

SpeciesDistributionToolkit - SimpleSDMLayers-v0.8.1

SimpleSDMLayers SimpleSDMLayers-v0.8.1

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Biosphere - Species Distribution Modeling - Julia
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SpeciesDistributionToolkit - SimpleSDMLayers-v0.8.0

SimpleSDMLayers SimpleSDMLayers-v0.8.0

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Biosphere - Species Distribution Modeling - Julia
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SpeciesDistributionToolkit - SimpleSDMLayers-v0.7.0

SimpleSDMLayers SimpleSDMLayers-v0.7.0

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Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 4 months ago

SpeciesDistributionToolkit - SimpleSDMLayers-v0.6.0

SimpleSDMLayers SimpleSDMLayers-v0.6.0

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Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 4 months ago

SpeciesDistributionToolkit - SimpleSDMLayers-v0.5.0

SimpleSDMLayers SimpleSDMLayers-v0.5.0

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Biosphere - Species Distribution Modeling - Julia
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SpeciesDistributionToolkit - SimpleSDMLayers-v0.4.8

SimpleSDMLayers SimpleSDMLayers-v0.4.8

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Biosphere - Species Distribution Modeling - Julia
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SpeciesDistributionToolkit - SimpleSDMLayers-v0.4.7

SimpleSDMLayers SimpleSDMLayers-v0.4.7

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Biosphere - Species Distribution Modeling - Julia
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SpeciesDistributionToolkit - SimpleSDMLayers-v0.4.6

SimpleSDMLayers SimpleSDMLayers-v0.4.6

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Biosphere - Species Distribution Modeling - Julia
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SpeciesDistributionToolkit - SimpleSDMLayers-v0.4.5

SimpleSDMLayers SimpleSDMLayers-v0.4.5

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Biosphere - Species Distribution Modeling - Julia
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SpeciesDistributionToolkit - SimpleSDMLayers-v0.4.4

SimpleSDMLayers SimpleSDMLayers-v0.4.4

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Biosphere - Species Distribution Modeling - Julia
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SpeciesDistributionToolkit - SimpleSDMLayers-v0.4.3

SimpleSDMLayers SimpleSDMLayers-v0.4.3

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Biosphere - Species Distribution Modeling - Julia
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SpeciesDistributionToolkit - SimpleSDMLayers-v0.4.2

SimpleSDMLayers SimpleSDMLayers-v0.4.2

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Biosphere - Species Distribution Modeling - Julia
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SpeciesDistributionToolkit - SimpleSDMLayers-v0.4.1

SimpleSDMLayers SimpleSDMLayers-v0.4.1

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Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 4 months ago

SpeciesDistributionToolkit - SimpleSDMLayers-v0.4.0

SimpleSDMLayers SimpleSDMLayers-v0.4.0

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Biosphere - Species Distribution Modeling - Julia
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SpeciesDistributionToolkit - SimpleSDMLayers-v0.3.6

SimpleSDMLayers SimpleSDMLayers-v0.3.6

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Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 4 months ago

SpeciesDistributionToolkit - SimpleSDMLayers-v0.3.5

SimpleSDMLayers SimpleSDMLayers-v0.3.5

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Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 4 months ago

SpeciesDistributionToolkit - SimpleSDMLayers-v0.3.4

SimpleSDMLayers SimpleSDMLayers-v0.3.4

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Biosphere - Species Distribution Modeling - Julia
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SpeciesDistributionToolkit - SimpleSDMLayers-v0.3.3

SimpleSDMLayers SimpleSDMLayers-v0.3.3

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Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 4 months ago

SpeciesDistributionToolkit - SimpleSDMLayers-v0.3.2

SimpleSDMLayers SimpleSDMLayers-v0.3.2

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Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 4 months ago

SpeciesDistributionToolkit - SimpleSDMLayers-v0.3.1

SimpleSDMLayers SimpleSDMLayers-v0.3.1

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Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 4 months ago

SpeciesDistributionToolkit - SimpleSDMLayers-v0.3.0

SimpleSDMLayers SimpleSDMLayers-v0.3.0

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Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 4 months ago

SpeciesDistributionToolkit - SimpleSDMLayers-v0.2.2

SimpleSDMLayers SimpleSDMLayers-v0.2.2

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Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 4 months ago

SpeciesDistributionToolkit - SimpleSDMLayers-v0.2.1

SimpleSDMLayers SimpleSDMLayers-v0.2.1

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Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 4 months ago

SpeciesDistributionToolkit - SimpleSDMLayers-v0.2.0

SimpleSDMLayers SimpleSDMLayers-v0.2.0

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Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 4 months ago

SpeciesDistributionToolkit - SimpleSDMLayers-v0.1.0

SimpleSDMLayers SimpleSDMLayers-v0.1.0

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Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 4 months ago

SpeciesDistributionToolkit - SimpleSDMLayers-v0.0.1

SimpleSDMLayers SimpleSDMLayers-v0.0.1

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Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 4 months ago

SpeciesDistributionToolkit - GBIF-v0.4.4

GBIF GBIF-v0.4.4

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Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 4 months ago

SpeciesDistributionToolkit - GBIF-v0.4.3

GBIF GBIF-v0.4.3

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Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 4 months ago

SpeciesDistributionToolkit - GBIF-v0.3.3

GBIF GBIF-v0.3.3

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Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 4 months ago

SpeciesDistributionToolkit - GBIF-v0.3.2

GBIF GBIF-v0.3.2

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Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 4 months ago

SpeciesDistributionToolkit - GBIF-v0.3.1

GBIF GBIF-v0.3.1

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Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 4 months ago

SpeciesDistributionToolkit - GBIF-v0.3.0

GBIF GBIF-v0.3.0

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Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 4 months ago

SpeciesDistributionToolkit - GBIF-v0.2.4

GBIF GBIF-v0.2.4

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Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 4 months ago

SpeciesDistributionToolkit - GBIF-v0.2.3

GBIF GBIF-v0.2.3

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Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 4 months ago

SpeciesDistributionToolkit - GBIF-v0.2.2

GBIF GBIF-v0.2.2

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Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 4 months ago

SpeciesDistributionToolkit - GBIF-v0.2.1

GBIF GBIF-v0.2.1

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Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 4 months ago

SpeciesDistributionToolkit - GBIF-v0.2.0

GBIF GBIF-v0.2.0

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Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 4 months ago

SpeciesDistributionToolkit - GBIF-v0.1.4

GBIF GBIF-v0.1.4

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Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 4 months ago

SpeciesDistributionToolkit - SimpleSDMPolygons-v1.3.0

SimpleSDMPolygons SimpleSDMPolygons-v1.3.0

Diff since SimpleSDMPolygons-v1.2.2

Adds support for ESRI administrative areas (ESRI, Places)

Merged pull requests:

• Explict specification of delimiter to GBIF CSV.File (#501) (@jeetsukumaran)
• Update to make decision stubs actually work (#502) (@tpoisot)
• SDeMo: PCA and Logistic automatically apply a z-score (#514) (@tpoisot)
• Fix PCA bug (#515) (@tpoisot)
• Fix for decision stumps (#518) (@tpoisot)
• Calibration improvements (#519) (@tpoisot)
• SDeMo v1.6.1 (#524) (@tpoisot)
• Occurrences with missing coordinates are handled during boundingbox (#526) (@tpoisot)
• Add a function to use the distance in degrees to generate pseudo-absences (#527) (@tpoisot)
• AdaBoost learning rate (#531) (@tpoisot)
• AdaBoost tweaks + rebalanced LOOCV (#532) (@tpoisot)
• Add admin areas from ESRI (#533) (@tpoisot)

Closed issues:

• CrossValidation type (#420)
• bug in virtual species documentation (#511)
• vcat doesn't work for MultiPolygons (#512)
• Decision stumps make weird predictions (#517)
• Add weights to isotonic calibration (#521)
• Platt calibration is very slow (#522)
• Re-balanced LOOCV (#529)
• Learning rate for AdaBoost (#530)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 6 months ago

SpeciesDistributionToolkit - SDeMo-v1.7.1

SDeMo SDeMo-v1.7.1

Diff since SDeMo-v1.7.0

Merged pull requests:

• AdaBoost tweaks + rebalanced LOOCV (#532) (@tpoisot)

Closed issues:

• Re-balanced LOOCV (#529)
• Learning rate for AdaBoost (#530)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 6 months ago

SpeciesDistributionToolkit - SDeMo-v1.7.0

SDeMo SDeMo-v1.7.0

Diff since SDeMo-v1.6.1

Merged pull requests:

• Occurrences with missing coordinates are handled during boundingbox (#526) (@tpoisot)
• Add a function to use the distance in degrees to generate pseudo-absences (#527) (@tpoisot)
• AdaBoost learning rate (#531) (@tpoisot)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 6 months ago

SpeciesDistributionToolkit - PseudoAbsences-v1.1.0

PseudoAbsences PseudoAbsences-v1.1.0

Diff since PseudoAbsences-v1.0.1

Merged pull requests:

• Download API for GBIF (#323) (@tpoisot)
• SDT new version with pseudo absences (#413) (@tpoisot)
• SimpleSDMPolygons (#417) (@gottacatchenall)
• Load and save occurrences from JSON files (#421) (@tpoisot)
• Default data and plotting for OccInt (#423) (@tpoisot)
• Remove occurrences plotting from SDT (#424) (@tpoisot)
• Fix the ways elements are collected from GBIFRecords (#425) (@tpoisot)
• semver(sdt): v1.6.0 with SimpleSDMPolygons (#427) (@gottacatchenall)
• Makie for layers (#428) (@tpoisot)
• SimpleSDMPolygons with re-exports from datasets (#429) (@tpoisot)
• SDMPolygons Makie.lines (#434) (@gottacatchenall)
• Phylopic v1 (#435) (@tpoisot)
• Polygons: Makie.lines a boundingbox (#437) (@gottacatchenall)
• GADM URL Typo (#440) (@gottacatchenall)
• SDMPolygons Makie extension supporting lines! and poly! without axis argument (#441) (@gottacatchenall)
• Release SDT post Phylopic 1 (#444) (@tpoisot)
• Fix various occint bugs (#447) (@tpoisot)
• Add bioregions from OneEarth (#448) (@tpoisot)
• Add bibliography to the documentation (#450) (@tpoisot)
• Fix GeoInterface implementation for (multi) polygons (#451) (@asinghvi17)
• OneEarth CSV Path Fix (#453) (@gottacatchenall)
• SimpleSDMPolygons docs + tests (#454) (@tpoisot)
• Replace MakieCore by Makie for the layers plotting extensions (#456) (@github-actions[bot])
• Variable selection checkpointing issue fixed (#459) (@tpoisot)
• Iteration over occurrences (#461) (@tpoisot)
• Replace MakieCore by Makie in OccurrencesInterface (#464) (@tpoisot)
• Change plotting package for polygons to Makie (#467) (@tpoisot)
• Update plotting extension to Makie for Phylopic (#468) (@tpoisot)
• Doc updates pre CSEE workshop (#473) (@tpoisot)
• Fix masking of occurrences by feature collections (#478) (@tpoisot)
• Bug fixes for SimpleSDMPolygons (#482) (@tpoisot)
• Fix the bug when masking a layer by a featurecollection (#483) (@tpoisot)
• Fix some bugs in SimpleSDMPolygons (#487) (@tpoisot)
• Experiments with AdaBoost (#488) (@tpoisot)
• Adding operations to SimpleSDMPolygons (#490) (@gottacatchenall)
• Support Makie v0.24 in SimpleSDMLayers (#491) (@tpoisot)
• Add Phylopic dep for 0.24 (#492) (@tpoisot)
• Clipping Polygons w/ Bounding Boxes (#495) (@gottacatchenall)
• boundingbox for MultiPolygon hotfix (#496) (@gottacatchenall)
• Training and thresholding improvements for SDeMo (#498) (@tpoisot)
• Adding CRS to construct polygons (#500) (@gottacatchenall)
• Explict specification of delimiter to GBIF CSV.File (#501) (@jeetsukumaran)
• Update to make decision stubs actually work (#502) (@tpoisot)
• SDeMo: PCA and Logistic automatically apply a z-score (#514) (@tpoisot)
• Fix PCA bug (#515) (@tpoisot)
• Fix for decision stumps (#518) (@tpoisot)
• Calibration improvements (#519) (@tpoisot)
• SDeMo v1.6.1 (#524) (@tpoisot)
• Occurrences with missing coordinates are handled during boundingbox (#526) (@tpoisot)
• Add a function to use the distance in degrees to generate pseudo-absences (#527) (@tpoisot)

Closed issues:

• Ecoregions (#49)
• MLJ integration (#83)
• Use the resolve endpoint to match GBIF (#181)
• Download API for GBIF (#308)
• Add a reclassify function (#407)
• New version using PseudoAbsences (#411)
• Cellsize was useful... (#416)
• CrossValidation type (#420)
• Move plotting function in SimpleSDMLayers (#422)
• Documentation update for OccurrencesInterface (#426)
• Phylopic v1 when? (#430)
• Add methods to do lines in addition to poly (#431)
• Some demo occurrences in OccurrencesInterface are wrong (#432)
• Boundingbox for SimpleSDMPolygons (#433)
• Typo in GADM url in SDMPolygons (#438)
• OneEarth ecoregions (#442)
• Indexing Polygons based on properties (#449)
• Can't tag new SimpleSDMPolygons release (#452)
• Support iteration for AbstractOccurrences (#460)
• Cannot mask occurrences by a feature collection (#476)
• Masking a layer with a FeatureCollection is not working (#477)
• Bugfixes for polygons (#479)
• Resolv should be Resolve (fix + alias for compatibility) (#480)
• EPA polygons (I think I know why) are not working (#481)
• Cleanup the reference section of the package (#484)
• EPA polygons are on the side (#485)
• First polygon plotted by Makie has the wrong attributes (#486)
• No boundinngbox method for multipolygons (#494)
• Improvements to model thresholding (#497)
• Clipped polygons cannot be used to mask layers (#499)
• bug in virtual species documentation (#511)
• vcat doesn't work for MultiPolygons (#512)
• Decision stumps make weird predictions (#517)
• Add weights to isotonic calibration (#521)
• Platt calibration is very slow (#522)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 6 months ago

SpeciesDistributionToolkit - v1.7.2

SpeciesDistributionToolkit v1.7.2

Diff since v1.7.1

Merged pull requests:

• Clipping Polygons w/ Bounding Boxes (#495) (@gottacatchenall)
• Training and thresholding improvements for SDeMo (#498) (@tpoisot)
• Adding CRS to construct polygons (#500) (@gottacatchenall)
• Explict specification of delimiter to GBIF CSV.File (#501) (@jeetsukumaran)
• Update to make decision stubs actually work (#502) (@tpoisot)
• SDeMo: PCA and Logistic automatically apply a z-score (#514) (@tpoisot)
• Fix PCA bug (#515) (@tpoisot)
• Fix for decision stumps (#518) (@tpoisot)
• Calibration improvements (#519) (@tpoisot)
• SDeMo v1.6.1 (#524) (@tpoisot)
• Occurrences with missing coordinates are handled during boundingbox (#526) (@tpoisot)

Closed issues:

• CrossValidation type (#420)
• No boundinngbox method for multipolygons (#494)
• Improvements to model thresholding (#497)
• Clipped polygons cannot be used to mask layers (#499)
• bug in virtual species documentation (#511)
• vcat doesn't work for MultiPolygons (#512)
• Decision stumps make weird predictions (#517)
• Add weights to isotonic calibration (#521)
• Platt calibration is very slow (#522)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 7 months ago

SpeciesDistributionToolkit - SDeMo-v1.6.1

SDeMo SDeMo-v1.6.1

Diff since SDeMo-v1.6.0

Merged pull requests:

• SDeMo v1.6.1 (#524) (@tpoisot)

Closed issues:

• Add weights to isotonic calibration (#521)
• Platt calibration is very slow (#522)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 7 months ago

SpeciesDistributionToolkit - SDeMo-v1.6.0

SDeMo SDeMo-v1.6.0

Diff since SDeMo-v1.5.5

Merged pull requests:

• Calibration improvements (#519) (@tpoisot)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 7 months ago

SpeciesDistributionToolkit - SDeMo-v1.5.5

SDeMo SDeMo-v1.5.5

Diff since SDeMo-v1.5.4

Merged pull requests:

• Fix for decision stumps (#518) (@tpoisot)

Closed issues:

• CrossValidation type (#420)
• bug in virtual species documentation (#511)
• Decision stumps make weird predictions (#517)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 7 months ago

SpeciesDistributionToolkit - SDeMo-v1.5.4

SDeMo SDeMo-v1.5.4

Diff since SDeMo-v1.5.3

Merged pull requests:

• Fix PCA bug (#515) (@tpoisot)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 7 months ago

SpeciesDistributionToolkit - SDeMo-v1.5.3

SDeMo SDeMo-v1.5.3

Diff since SDeMo-v1.5.2

Merged pull requests:

• SDeMo: PCA and Logistic automatically apply a z-score (#514) (@tpoisot)

Closed issues:

• vcat doesn't work for MultiPolygons (#512)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 7 months ago

SpeciesDistributionToolkit - SDeMo-v1.5.2

SDeMo SDeMo-v1.5.2

Diff since SDeMo-v1.5.1

Merged pull requests:

• Adding CRS to construct polygons (#500) (@gottacatchenall)
• Explict specification of delimiter to GBIF CSV.File (#501) (@jeetsukumaran)
• Update to make decision stubs actually work (#502) (@tpoisot)

Closed issues:

• Clipped polygons cannot be used to mask layers (#499)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 10 months ago

SpeciesDistributionToolkit - GBIF-v1.1.1

GBIF GBIF-v1.1.1

Diff since GBIF-v1.1.0

Merged pull requests:

• Add bioregions from OneEarth (#448) (@tpoisot)
• Add bibliography to the documentation (#450) (@tpoisot)
• Fix GeoInterface implementation for (multi) polygons (#451) (@asinghvi17)
• OneEarth CSV Path Fix (#453) (@gottacatchenall)
• SimpleSDMPolygons docs + tests (#454) (@tpoisot)
• Replace MakieCore by Makie for the layers plotting extensions (#456) (@github-actions[bot])
• Variable selection checkpointing issue fixed (#459) (@tpoisot)
• Iteration over occurrences (#461) (@tpoisot)
• Replace MakieCore by Makie in OccurrencesInterface (#464) (@tpoisot)
• Change plotting package for polygons to Makie (#467) (@tpoisot)
• Update plotting extension to Makie for Phylopic (#468) (@tpoisot)
• Doc updates pre CSEE workshop (#473) (@tpoisot)
• Fix masking of occurrences by feature collections (#478) (@tpoisot)
• Bug fixes for SimpleSDMPolygons (#482) (@tpoisot)
• Fix the bug when masking a layer by a featurecollection (#483) (@tpoisot)
• Fix some bugs in SimpleSDMPolygons (#487) (@tpoisot)
• Experiments with AdaBoost (#488) (@tpoisot)
• Adding operations to SimpleSDMPolygons (#490) (@gottacatchenall)
• Support Makie v0.24 in SimpleSDMLayers (#491) (@tpoisot)
• Add Phylopic dep for 0.24 (#492) (@tpoisot)
• Clipping Polygons w/ Bounding Boxes (#495) (@gottacatchenall)
• boundingbox for MultiPolygon hotfix (#496) (@gottacatchenall)
• Training and thresholding improvements for SDeMo (#498) (@tpoisot)
• Adding CRS to construct polygons (#500) (@gottacatchenall)
• Explict specification of delimiter to GBIF CSV.File (#501) (@jeetsukumaran)

Closed issues:

• MLJ integration (#83)
• Use the resolve endpoint to match GBIF (#181)
• OneEarth ecoregions (#442)
• Indexing Polygons based on properties (#449)
• Can't tag new SimpleSDMPolygons release (#452)
• Support iteration for AbstractOccurrences (#460)
• Cannot mask occurrences by a feature collection (#476)
• Masking a layer with a FeatureCollection is not working (#477)
• Bugfixes for polygons (#479)
• Resolv should be Resolve (fix + alias for compatibility) (#480)
• EPA polygons (I think I know why) are not working (#481)
• Cleanup the reference section of the package (#484)
• EPA polygons are on the side (#485)
• First polygon plotted by Makie has the wrong attributes (#486)
• No boundinngbox method for multipolygons (#494)
• Improvements to model thresholding (#497)
• Clipped polygons cannot be used to mask layers (#499)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 10 months ago

SpeciesDistributionToolkit - SimpleSDMPolygons-v1.2.2

SimpleSDMPolygons SimpleSDMPolygons-v1.2.2

Diff since SimpleSDMPolygons-v1.2.1

Merged pull requests:

• Training and thresholding improvements for SDeMo (#498) (@tpoisot)
• Adding CRS to construct polygons (#500) (@gottacatchenall)

Closed issues:

• Clipped polygons cannot be used to mask layers (#499)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 10 months ago

SpeciesDistributionToolkit - SDeMo-v1.5.1

SDeMo SDeMo-v1.5.1

Diff since SDeMo-v1.5.0

Merged pull requests:

• Adding operations to SimpleSDMPolygons (#490) (@gottacatchenall)
• Support Makie v0.24 in SimpleSDMLayers (#491) (@tpoisot)
• Add Phylopic dep for 0.24 (#492) (@tpoisot)
• Clipping Polygons w/ Bounding Boxes (#495) (@gottacatchenall)
• boundingbox for MultiPolygon hotfix (#496) (@gottacatchenall)
• Training and thresholding improvements for SDeMo (#498) (@tpoisot)

Closed issues:

• No boundinngbox method for multipolygons (#494)
• Improvements to model thresholding (#497)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 10 months ago

SpeciesDistributionToolkit - SimpleSDMPolygons-v1.2.1

SimpleSDMPolygons SimpleSDMPolygons-v1.2.1

Diff since SimpleSDMPolygons-v1.2.0

Merged pull requests:

• Support Makie v0.24 in SimpleSDMLayers (#491) (@tpoisot)
• Add Phylopic dep for 0.24 (#492) (@tpoisot)
• Clipping Polygons w/ Bounding Boxes (#495) (@gottacatchenall)
• boundingbox for MultiPolygon hotfix (#496) (@gottacatchenall)

Closed issues:

• No boundinngbox method for multipolygons (#494)
• Improvements to model thresholding (#497)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 10 months ago

SpeciesDistributionToolkit - v1.7.1

SpeciesDistributionToolkit v1.7.1

Diff since v1.7.0

Merged pull requests:

• Adding operations to SimpleSDMPolygons (#490) (@gottacatchenall)
• Support Makie v0.24 in SimpleSDMLayers (#491) (@tpoisot)
• Add Phylopic dep for 0.24 (#492) (@tpoisot)
• boundingbox for MultiPolygon hotfix (#496) (@gottacatchenall)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 10 months ago

SpeciesDistributionToolkit - SimpleSDMLayers-v1.3.2

SimpleSDMLayers SimpleSDMLayers-v1.3.2

Diff since SimpleSDMLayers-v1.3.1

Merged pull requests:

• Replace MakieCore by Makie in OccurrencesInterface (#464) (@tpoisot)
• Change plotting package for polygons to Makie (#467) (@tpoisot)
• Update plotting extension to Makie for Phylopic (#468) (@tpoisot)
• Doc updates pre CSEE workshop (#473) (@tpoisot)
• Fix masking of occurrences by feature collections (#478) (@tpoisot)
• Bug fixes for SimpleSDMPolygons (#482) (@tpoisot)
• Fix the bug when masking a layer by a featurecollection (#483) (@tpoisot)
• Fix some bugs in SimpleSDMPolygons (#487) (@tpoisot)
• Experiments with AdaBoost (#488) (@tpoisot)
• Adding operations to SimpleSDMPolygons (#490) (@gottacatchenall)
• Support Makie v0.24 in SimpleSDMLayers (#491) (@tpoisot)
• Add Phylopic dep for 0.24 (#492) (@tpoisot)

Closed issues:

• Cannot mask occurrences by a feature collection (#476)
• Masking a layer with a FeatureCollection is not working (#477)
• Bugfixes for polygons (#479)
• Resolv should be Resolve (fix + alias for compatibility) (#480)
• EPA polygons (I think I know why) are not working (#481)
• Cleanup the reference section of the package (#484)
• EPA polygons are on the side (#485)
• First polygon plotted by Makie has the wrong attributes (#486)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 10 months ago

SpeciesDistributionToolkit - Phylopic-v1.0.2

Phylopic Phylopic-v1.0.2

Diff since Phylopic-v1.0.1

Merged pull requests:

• Doc updates pre CSEE workshop (#473) (@tpoisot)
• Fix masking of occurrences by feature collections (#478) (@tpoisot)
• Bug fixes for SimpleSDMPolygons (#482) (@tpoisot)
• Fix the bug when masking a layer by a featurecollection (#483) (@tpoisot)
• Fix some bugs in SimpleSDMPolygons (#487) (@tpoisot)
• Experiments with AdaBoost (#488) (@tpoisot)
• Adding operations to SimpleSDMPolygons (#490) (@gottacatchenall)
• Add Phylopic dep for 0.24 (#492) (@tpoisot)

Closed issues:

• Cannot mask occurrences by a feature collection (#476)
• Masking a layer with a FeatureCollection is not working (#477)
• Bugfixes for polygons (#479)
• Resolv should be Resolve (fix + alias for compatibility) (#480)
• EPA polygons (I think I know why) are not working (#481)
• Cleanup the reference section of the package (#484)
• EPA polygons are on the side (#485)
• First polygon plotted by Makie has the wrong attributes (#486)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 10 months ago

SpeciesDistributionToolkit - SimpleSDMPolygons-v1.2.0

SimpleSDMPolygons SimpleSDMPolygons-v1.2.0

Diff since SimpleSDMPolygons-v1.1.4

Merged pull requests:

• Doc updates pre CSEE workshop (#473) (@tpoisot)
• Experiments with AdaBoost (#488) (@tpoisot)
• Adding operations to SimpleSDMPolygons (#490) (@gottacatchenall)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 10 months ago

SpeciesDistributionToolkit - v1.7.0

SpeciesDistributionToolkit v1.7.0

Diff since v1.6.3

Merged pull requests:

• Doc updates pre CSEE workshop (#473) (@tpoisot)
• Fix some bugs in SimpleSDMPolygons (#487) (@tpoisot)
• Experiments with AdaBoost (#488) (@tpoisot)

Closed issues:

• EPA polygons are on the side (#485)
• First polygon plotted by Makie has the wrong attributes (#486)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 11 months ago

SpeciesDistributionToolkit - SDeMo-v1.5.0

SDeMo SDeMo-v1.5.0

Diff since SDeMo-v1.4.1

Merged pull requests:

• Replace MakieCore by Makie for the layers plotting extensions (#456) (@github-actions[bot])
• Iteration over occurrences (#461) (@tpoisot)
• Replace MakieCore by Makie in OccurrencesInterface (#464) (@tpoisot)
• Change plotting package for polygons to Makie (#467) (@tpoisot)
• Update plotting extension to Makie for Phylopic (#468) (@tpoisot)
• Doc updates pre CSEE workshop (#473) (@tpoisot)
• Fix masking of occurrences by feature collections (#478) (@tpoisot)
• Bug fixes for SimpleSDMPolygons (#482) (@tpoisot)
• Fix the bug when masking a layer by a featurecollection (#483) (@tpoisot)
• Fix some bugs in SimpleSDMPolygons (#487) (@tpoisot)
• Experiments with AdaBoost (#488) (@tpoisot)

Closed issues:

• MLJ integration (#83)
• Support iteration for AbstractOccurrences (#460)
• Cannot mask occurrences by a feature collection (#476)
• Masking a layer with a FeatureCollection is not working (#477)
• Bugfixes for polygons (#479)
• Resolv should be Resolve (fix + alias for compatibility) (#480)
• EPA polygons (I think I know why) are not working (#481)
• Cleanup the reference section of the package (#484)
• EPA polygons are on the side (#485)
• First polygon plotted by Makie has the wrong attributes (#486)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 11 months ago

SpeciesDistributionToolkit - SimpleSDMPolygons-v1.1.4

SimpleSDMPolygons SimpleSDMPolygons-v1.1.4

Diff since SimpleSDMPolygons-v1.1.3

Merged pull requests:

• Fix the bug when masking a layer by a featurecollection (#483) (@tpoisot)
• Fix some bugs in SimpleSDMPolygons (#487) (@tpoisot)

Closed issues:

• Masking a layer with a FeatureCollection is not working (#477)
• Cleanup the reference section of the package (#484)
• EPA polygons are on the side (#485)
• First polygon plotted by Makie has the wrong attributes (#486)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 11 months ago

SpeciesDistributionToolkit - v1.6.3

SpeciesDistributionToolkit v1.6.3

Diff since v1.6.2

Merged pull requests:

• Bug fixes for SimpleSDMPolygons (#482) (@tpoisot)
• Fix the bug when masking a layer by a featurecollection (#483) (@tpoisot)

Closed issues:

• Masking a layer with a FeatureCollection is not working (#477)
• Bugfixes for polygons (#479)
• Resolv should be Resolve (fix + alias for compatibility) (#480)
• EPA polygons (I think I know why) are not working (#481)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 12 months ago

SpeciesDistributionToolkit - SimpleSDMPolygons-v1.1.3

SimpleSDMPolygons SimpleSDMPolygons-v1.1.3

Diff since SimpleSDMPolygons-v1.1.2

Merged pull requests:

• Update plotting extension to Makie for Phylopic (#468) (@tpoisot)
• Fix masking of occurrences by feature collections (#478) (@tpoisot)
• Bug fixes for SimpleSDMPolygons (#482) (@tpoisot)

Closed issues:

• Cannot mask occurrences by a feature collection (#476)
• Bugfixes for polygons (#479)
• Resolv should be Resolve (fix + alias for compatibility) (#480)
• EPA polygons (I think I know why) are not working (#481)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 12 months ago

SpeciesDistributionToolkit - v1.6.2

SpeciesDistributionToolkit v1.6.2

Diff since v1.6.1

Merged pull requests:

• Download API for GBIF (#323) (@tpoisot)
• Fix various occint bugs (#447) (@tpoisot)
• Add bioregions from OneEarth (#448) (@tpoisot)
• Add bibliography to the documentation (#450) (@tpoisot)
• Fix GeoInterface implementation for (multi) polygons (#451) (@asinghvi17)
• OneEarth CSV Path Fix (#453) (@gottacatchenall)
• SimpleSDMPolygons docs + tests (#454) (@tpoisot)
• Replace MakieCore by Makie for the layers plotting extensions (#456) (@github-actions[bot])
• Variable selection checkpointing issue fixed (#459) (@tpoisot)
• Iteration over occurrences (#461) (@tpoisot)
• Replace MakieCore by Makie in OccurrencesInterface (#464) (@tpoisot)
• Change plotting package for polygons to Makie (#467) (@tpoisot)
• Update plotting extension to Makie for Phylopic (#468) (@tpoisot)
• Fix masking of occurrences by feature collections (#478) (@tpoisot)

Closed issues:

• MLJ integration (#83)
• Use the resolve endpoint to match GBIF (#181)
• Download API for GBIF (#308)
• Add a reclassify function (#407)
• Cellsize was useful... (#416)
• Documentation update for OccurrencesInterface (#426)
• Some demo occurrences in OccurrencesInterface are wrong (#432)
• OneEarth ecoregions (#442)
• Indexing Polygons based on properties (#449)
• Can't tag new SimpleSDMPolygons release (#452)
• Support iteration for AbstractOccurrences (#460)
• Cannot mask occurrences by a feature collection (#476)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 12 months ago

SpeciesDistributionToolkit - Phylopic-v1.0.1

Phylopic Phylopic-v1.0.1

Diff since Phylopic-v1.0.0

Merged pull requests:

• Download API for GBIF (#323) (@tpoisot)
• Release SDT post Phylopic 1 (#444) (@tpoisot)
• Fix various occint bugs (#447) (@tpoisot)
• Add bioregions from OneEarth (#448) (@tpoisot)
• Add bibliography to the documentation (#450) (@tpoisot)
• Fix GeoInterface implementation for (multi) polygons (#451) (@asinghvi17)
• OneEarth CSV Path Fix (#453) (@gottacatchenall)
• SimpleSDMPolygons docs + tests (#454) (@tpoisot)
• Replace MakieCore by Makie for the layers plotting extensions (#456) (@github-actions[bot])
• Variable selection checkpointing issue fixed (#459) (@tpoisot)
• Iteration over occurrences (#461) (@tpoisot)
• Replace MakieCore by Makie in OccurrencesInterface (#464) (@tpoisot)
• Change plotting package for polygons to Makie (#467) (@tpoisot)
• Update plotting extension to Makie for Phylopic (#468) (@tpoisot)

Closed issues:

• MLJ integration (#83)
• Use the resolve endpoint to match GBIF (#181)
• Download API for GBIF (#308)
• Add a reclassify function (#407)
• Cellsize was useful... (#416)
• Documentation update for OccurrencesInterface (#426)
• Some demo occurrences in OccurrencesInterface are wrong (#432)
• OneEarth ecoregions (#442)
• Indexing Polygons based on properties (#449)
• Can't tag new SimpleSDMPolygons release (#452)
• Support iteration for AbstractOccurrences (#460)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 12 months ago

SpeciesDistributionToolkit - OccurrencesInterface-v1.2.1

OccurrencesInterface OccurrencesInterface-v1.2.1

Diff since OccurrencesInterface-v1.2.0

Merged pull requests:

• Replace MakieCore by Makie for the layers plotting extensions (#456) (@github-actions[bot])
• Replace MakieCore by Makie in OccurrencesInterface (#464) (@tpoisot)
• Change plotting package for polygons to Makie (#467) (@tpoisot)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 12 months ago

SpeciesDistributionToolkit - SimpleSDMPolygons-v1.1.2

SimpleSDMPolygons SimpleSDMPolygons-v1.1.2

Diff since SimpleSDMPolygons-v1.1.1

Merged pull requests:

• Replace MakieCore by Makie for the layers plotting extensions (#456) (@github-actions[bot])
• Variable selection checkpointing issue fixed (#459) (@tpoisot)
• Iteration over occurrences (#461) (@tpoisot)
• Change plotting package for polygons to Makie (#467) (@tpoisot)

Closed issues:

• MLJ integration (#83)
• Use the resolve endpoint to match GBIF (#181)
• Support iteration for AbstractOccurrences (#460)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 12 months ago

SpeciesDistributionToolkit - SimpleSDMLayers-v1.3.1

SimpleSDMLayers SimpleSDMLayers-v1.3.1

Diff since SimpleSDMLayers-v1.3.0

Merged pull requests:

• Download API for GBIF (#323) (@tpoisot)
• Add bioregions from OneEarth (#448) (@tpoisot)
• Add bibliography to the documentation (#450) (@tpoisot)
• Fix GeoInterface implementation for (multi) polygons (#451) (@asinghvi17)
• OneEarth CSV Path Fix (#453) (@gottacatchenall)
• SimpleSDMPolygons docs + tests (#454) (@tpoisot)
• Replace MakieCore by Makie for the layers plotting extensions (#456) (@github-actions[bot])
• Variable selection checkpointing issue fixed (#459) (@tpoisot)
• Iteration over occurrences (#461) (@tpoisot)

Closed issues:

• MLJ integration (#83)
• Use the resolve endpoint to match GBIF (#181)
• Download API for GBIF (#308)
• OneEarth ecoregions (#442)
• Indexing Polygons based on properties (#449)
• Can't tag new SimpleSDMPolygons release (#452)
• Support iteration for AbstractOccurrences (#460)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 12 months ago

SpeciesDistributionToolkit - OccurrencesInterface-v1.2.0

OccurrencesInterface OccurrencesInterface-v1.2.0

Diff since OccurrencesInterface-v1.1.1

Merged pull requests:

• Download API for GBIF (#323) (@tpoisot)
• Add bioregions from OneEarth (#448) (@tpoisot)
• Add bibliography to the documentation (#450) (@tpoisot)
• Fix GeoInterface implementation for (multi) polygons (#451) (@asinghvi17)
• OneEarth CSV Path Fix (#453) (@gottacatchenall)
• SimpleSDMPolygons docs + tests (#454) (@tpoisot)
• Variable selection checkpointing issue fixed (#459) (@tpoisot)
• Iteration over occurrences (#461) (@tpoisot)

Closed issues:

• MLJ integration (#83)
• Use the resolve endpoint to match GBIF (#181)
• Download API for GBIF (#308)
• Add a reclassify function (#407)
• Cellsize was useful... (#416)
• OneEarth ecoregions (#442)
• Indexing Polygons based on properties (#449)
• Can't tag new SimpleSDMPolygons release (#452)
• Support iteration for AbstractOccurrences (#460)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 12 months ago

SpeciesDistributionToolkit - SDeMo-v1.4.1

SDeMo SDeMo-v1.4.1

Diff since SDeMo-v1.4.0

Merged pull requests:

• Download API for GBIF (#323) (@tpoisot)
• SDT new version with pseudo absences (#413) (@tpoisot)
• Bug in sampling from Bool layers (#415) (@tpoisot)
• SimpleSDMPolygons (#417) (@gottacatchenall)
• Load and save occurrences from JSON files (#421) (@tpoisot)
• Default data and plotting for OccInt (#423) (@tpoisot)
• Remove occurrences plotting from SDT (#424) (@tpoisot)
• Fix the ways elements are collected from GBIFRecords (#425) (@tpoisot)
• semver(sdt): v1.6.0 with SimpleSDMPolygons (#427) (@gottacatchenall)
• Makie for layers (#428) (@tpoisot)
• SimpleSDMPolygons with re-exports from datasets (#429) (@tpoisot)
• SDMPolygons Makie.lines (#434) (@gottacatchenall)
• Phylopic v1 (#435) (@tpoisot)
• Polygons: Makie.lines a boundingbox (#437) (@gottacatchenall)
• GADM URL Typo (#440) (@gottacatchenall)
• SDMPolygons Makie extension supporting lines! and poly! without axis argument (#441) (@gottacatchenall)
• Release SDT post Phylopic 1 (#444) (@tpoisot)
• Fix various occint bugs (#447) (@tpoisot)
• Add bioregions from OneEarth (#448) (@tpoisot)
• Add bibliography to the documentation (#450) (@tpoisot)
• Fix GeoInterface implementation for (multi) polygons (#451) (@asinghvi17)
• OneEarth CSV Path Fix (#453) (@gottacatchenall)
• SimpleSDMPolygons docs + tests (#454) (@tpoisot)
• Variable selection checkpointing issue fixed (#459) (@tpoisot)

Closed issues:

• Ecoregions (#49)
• Download API for GBIF (#308)
• Add a reclassify function (#407)
• New version using PseudoAbsences (#411)
• Sampling from Boolean layers is wrong (#414)
• Cellsize was useful... (#416)
• Move plotting function in SimpleSDMLayers (#422)
• Documentation update for OccurrencesInterface (#426)
• Phylopic v1 when? (#430)
• Add methods to do lines in addition to poly (#431)
• Some demo occurrences in OccurrencesInterface are wrong (#432)
• Boundingbox for SimpleSDMPolygons (#433)
• Typo in GADM url in SDMPolygons (#438)
• OneEarth ecoregions (#442)
• Indexing Polygons based on properties (#449)
• Can't tag new SimpleSDMPolygons release (#452)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] 12 months ago

SpeciesDistributionToolkit - SimpleSDMPolygons-v1.1.1

SimpleSDMPolygons SimpleSDMPolygons-v1.1.1

Diff since SimpleSDMPolygons-v1.1.0

Merged pull requests:

• SimpleSDMPolygons docs + tests (#454) (@tpoisot)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit - SimpleSDMPolygons-v1.1.0

SimpleSDMPolygons SimpleSDMPolygons-v1.1.0

Diff since SimpleSDMPolygons-v1.0.5

Merged pull requests:

• Add bioregions from OneEarth (#448) (@tpoisot)
• OneEarth CSV Path Fix (#453) (@gottacatchenall)

Closed issues:

• OneEarth ecoregions (#442)
• Indexing Polygons based on properties (#449)
• Can't tag new SimpleSDMPolygons release (#452)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit - SimpleSDMPolygons-v1.0.5

SimpleSDMPolygons SimpleSDMPolygons-v1.0.5

Diff since SimpleSDMPolygons-v1.0.4

Merged pull requests:

• Download API for GBIF (#323) (@tpoisot)
• Phylopic v1 (#435) (@tpoisot)
• Release SDT post Phylopic 1 (#444) (@tpoisot)
• Fix various occint bugs (#447) (@tpoisot)
• Add bibliography to the documentation (#450) (@tpoisot)
• Fix GeoInterface implementation for (multi) polygons (#451) (@asinghvi17)

Closed issues:

• Download API for GBIF (#308)
• Add a reclassify function (#407)
• Cellsize was useful... (#416)
• Documentation update for OccurrencesInterface (#426)
• Phylopic v1 when? (#430)
• Add methods to do lines in addition to poly (#431)
• Some demo occurrences in OccurrencesInterface are wrong (#432)
• Boundingbox for SimpleSDMPolygons (#433)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] about 1 year ago

SpeciesDistributionToolkit - GBIF-v1.1.0

GBIF GBIF-v1.1.0

Diff since GBIF-v1.0.2

Merged pull requests:

• Download API for GBIF (#323) (@tpoisot)
• Remove occurrences plotting from SDT (#424) (@tpoisot)
• semver(sdt): v1.6.0 with SimpleSDMPolygons (#427) (@gottacatchenall)
• Makie for layers (#428) (@tpoisot)
• SimpleSDMPolygons with re-exports from datasets (#429) (@tpoisot)
• SDMPolygons Makie.lines (#434) (@gottacatchenall)
• Phylopic v1 (#435) (@tpoisot)
• Polygons: Makie.lines a boundingbox (#437) (@gottacatchenall)
• GADM URL Typo (#440) (@gottacatchenall)
• SDMPolygons Makie extension supporting lines! and poly! without axis argument (#441) (@gottacatchenall)
• Release SDT post Phylopic 1 (#444) (@tpoisot)
• Fix various occint bugs (#447) (@tpoisot)

Closed issues:

• Download API for GBIF (#308)
• Add a reclassify function (#407)
• Cellsize was useful... (#416)
• Move plotting function in SimpleSDMLayers (#422)
• Documentation update for OccurrencesInterface (#426)
• Phylopic v1 when? (#430)
• Add methods to do lines in addition to poly (#431)
• Some demo occurrences in OccurrencesInterface are wrong (#432)
• Boundingbox for SimpleSDMPolygons (#433)
• Typo in GADM url in SDMPolygons (#438)

Biosphere - Species Distribution Modeling - Julia
Published by github-actions[bot] about 1 year ago