R-ecology-lesson

Data Analysis and Visualization in R for Ecologists.
https://github.com/datacarpentry/R-ecology-lesson

Category: Sustainable Development
Sub Category: Education

Keywords

carpentries data-carpentry data-visualisation data-visualization data-wrangling ecology english lesson open-educational-resources r stable

Keywords from Contributors

beta carpentries-incubator tidyverse spreadsheet data-management fair-principles sustainable-software tibfds geospatial-data carpentries-lab

Last synced: about 2 hours ago
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Repository metadata

Data Analysis and Visualization in R for Ecologists

• Host: GitHub
• URL: https://github.com/datacarpentry/R-ecology-lesson
• Owner: datacarpentry
• License: other
• Created: 2015-04-02T22:11:48.000Z (about 10 years ago)
• Default Branch: main
• Last Pushed: 2025-04-22T00:23:18.000Z (6 days ago)
• Last Synced: 2025-04-22T01:25:00.756Z (6 days ago)
• Topics: carpentries, data-carpentry, data-visualisation, data-visualization, data-wrangling, ecology, english, lesson, open-educational-resources, r, stable
• Language: R
• Homepage: https://datacarpentry.org/R-ecology-lesson/
• Size: 579 MB
• Stars: 321
• Watchers: 29
• Forks: 508
• Open Issues: 21
• Releases: 8
• Metadata Files:
  • Readme: README.md
  • Changelog: NEWS.md
  • Contributing: CONTRIBUTING.Rmd
  • License: LICENSE.md
  • Citation: CITATION.Rmd
  • Authors: AUTHORS
  • Zenodo: .zenodo.json

README.md

Citation (CITATION.Rmd)

# CITATION

```{r, echo=FALSE, results="hide"}
eds <- personList(
    person(given = "Ana Costa", family = "Conrado"),
    person(given = "Auriel M.V.", family = "Fournier"),
    person(given = "Brian", family = "Seok"),
    person(given = "Francois", family = "Michonneau")
)

generate_citation <- function(authors = "AUTHORS",
                              editors = eds,
                              doi = "10.5281/zenodo.3264888") {
    aut <- readLines(authors)
    
    # remove first line
    aut <- aut[-1]
    
    aut <- as.person(aut)
    
    bibentry(
        bibtype = "Misc",
        author = personList(aut),
        title = "datacarpentry/R-ecology-lesson: Data Carpentry: Data Analysis and Visualization in R for Ecologists, June 2019",
        editor = editors,
        month = format(Sys.Date(), "%B"),
        year = format(Sys.Date(), "%Y"),
        url = "https://datacarpentry.org/R-ecology-lesson/",
        doi = doi
    )
}

generate_zenodo_json <- function(editors) {
    tfile <- tempfile()
    system(paste("git shortlog -n -e -s >", tfile))
    aut <- read.table(file = tfile, sep = "\t")
    aut <- as.person(aut[, 2])
    pp <- lapply(aut,  function(x) {
        res <- gsub("^\\s", "", paste(paste(x$given, collapse = " "),
                                      x$family))
        list(name =  res)
    })
    eds <- paste(editors$given, editors$family)
    res <- list(creators = pp)
    
    if (!is.null(editors)) {
        ctb <- lapply(paste(editors$given, editors$family),
                      function(x)
                          list(type = "Editor", name = x))
        res <- c(list(contributors = ctb), res)
    }
    cat(jsonlite::toJSON(res, auto_unbox = TRUE), file = ".zenodo.json")
}

system("update-copyright.py")
## generate_zenodo_json(editors = eds)
```

## Data

Data is from the paper S. K. Morgan Ernest, Thomas J. Valone, and James
H. Brown. 2009. Long-term monitoring and experimental manipulation of a
Chihuahuan Desert ecosystem near Portal, Arizona, USA. Ecology 90:1708.

[http://esapubs.org/archive/ecol/E090/118/](http://esapubs.org/archive/ecol/E090/118/)

A simplified version of this data, suitable for teaching is available on
[figshare](https://doi.org/10.6084/m9.figshare.1314459.v5).

## Lessons

The first workshop was run at NESCent on May 8-9, 2014 with the development and
instruction of lessons by Karen Cranston, Hilmar Lapp, Tracy Teal, and Ethan
White and contributions from Deb Paul and Mike Smorul.

Original materials adapted from SWC Python lessons by Sarah Supp. John Blischak
led the continued development of materials with contributions from Gavin
Simpson, Tracy Teal, Greg Wilson, Diego Barneche, Stephen Turner, and Karthik
Ram. This original material has been modified and expanded by François
Michonneau.

The **`dplyr`** lesson was created by Kara Woo, who copied and modified and
modified from Jeff
Hollister's [materials](https://usepa.github.io/introR/2015/01/14/03-Clean/).

The **`ggplot2`** lesson was initially created by Mateusz Kuzak, Diana Marek,
and Hedi Peterson, during a Hackathon in Espoo, Finland on March 16-17, 2015,
sponsored by the [ELIXIR project](https://elixir-europe.org/).

You can cite this Data Carpentry lesson as follow:

```{r, echo=FALSE, results="asis"}
print(generate_citation(), style = "html")
```

or as a BibTeX entry:

```{r, echo=FALSE, comment=""}
print(generate_citation(), style = "bibtex")
```

---

Owner metadata

• Name: Data Carpentry
• Login: datacarpentry
• Email: [email protected]
• Kind: organization
• Description: Workshops teaching scientists basic skills for retrieving, viewing, managing, and manipulating data in an open and reproducible way.
• Website: https://datacarpentry.org/
• Location:
• Twitter:
• Company:
• Icon url: https://avatars.githubusercontent.com/u/6666450?v=4
• Repositories: 89
• Last ynced at: 2023-03-13T13:55:49.004Z
• Profile URL: https://github.com/datacarpentry

---

GitHub Events

Total

• Issues event: 3
• Watch event: 8
• Delete event: 13
• Issue comment event: 15
• Push event: 69
• Pull request event: 18
• Pull request review event: 2
• Fork event: 6
• Create event: 12

Last Year

• Issues event: 3
• Watch event: 8
• Delete event: 13
• Issue comment event: 15
• Push event: 69
• Pull request event: 18
• Pull request review event: 2
• Fork event: 6
• Create event: 12

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Committers metadata

Last synced: 6 days ago

Name	Email	Commits
Francois Michonneau	f****u@g****m	373
Tobias Busch	t****h@g****m	46
Toby Hodges	t****s@g****m	31
Katrin Leinweber	K****r@t****u	27
Brian Seok	s****k@c****u	27
Adam Obeng	g****b@b****m	25
zkamvar	z****r	19
Mateusz Kuzak	m****k@g****m	15
Katrin Leinweber	9****r	14
Tracy Teal	t****l@g****m	14
Edmund Hart	e****t@g****m	14
Ana Costa	2****t	13
Philip Lijnzaad	p****d@g****m	12
Kara Woo	w****a@g****m	12
Ben Marwick	b****k@h****m	10
maneesha sane	8****a	10
Aleksandra Pawlik	a****k@g****m	9
Auriel M.V. Fournier	a****r@g****m	9
Matthias Grenié	m****e@h****m	8
kathy0305	k****5@h****m	8
Erin Becker	e****r@c****g	8
Ben Bolker	b****r@g****m	8
Ethan White	e****n@w****g	7
chriseshleman	e****s@g****m	7
Kari L. Jordan	k****n@m****m	7
Doug Joubert	d****C	5
Mark Robinson	m****n@i****h	5
David	k****d@s****u	5
Sergio Martínez Cuesta	s****e@g****m	5
Ruud Steltenpool	g****m@s****m	5
and 187 more...

Committer domains:

• carpentries.org: 3
• weecology.org: 3
• ufl.edu: 3
• wisc.edu: 2
• msu.edu: 2
• uw.edu: 2
• umich.edu: 2
• ucdavis.edu: 2
• cam.ac.uk: 2
• swansea.ac.uk: 1
• otago.ac.nz: 1
• iimog.org: 1
• mac.com: 1
• geo.uio.no: 1
• idyll.org: 1
• g.harvard.edu: 1
• sub.uni-goettingen.de: 1
• anche.no: 1
• umb.edu: 1
• soton.ac.uk: 1
• bu.edu: 1
• nih.govt: 1
• member.fsf.org: 1
• steltenpower.com: 1
• si.edu: 1
• imls.uzh.ch: 1
• me.com: 1
• binaryeagle.com: 1
• colorado.edu: 1
• tib.eu: 1
• wfu.edu: 1
• sfu.ca: 1
• drycafe.net: 1
• illinois.edu: 1
• ex.ac.uk: 1
• canada.ca: 1
• mimuw.edu.pl: 1
• gokliya.net: 1
• calpoly.edu: 1
• czterybity.pl: 1
• unm.edu: 1
• mail.missouri.edu: 1
• cc.au.dk: 1
• ucdenver.edu: 1
• uchicago.edu: 1
• logarithmic.net: 1
• mail.nih.gov: 1
• slcu.cam.ac.uk: 1
• neoninc.org: 1
• ucsd.edu: 1
• jhu.edu: 1
• utexas.edu: 1
• mcgill.ca: 1
• york.ac.uk: 1
• aol.com: 1
• acadiau.ca: 1
• email.arizona.edu: 1

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Issue and Pull Request metadata

Last synced: 1 day ago

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/datacarpentry/R-ecology-lesson

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Dependencies

Score: 11.214708090603065