r3PG - r3PG 0.1.6

Bug fixed

• replace real(kind=8) with real(kind=kind(0.0d0)) in the more modern source files #97

New function and data sets

Major changes

Minor changes

• re-structuring the repository and moving the files to the main directory #95
• adding GitHub CI

Biosphere - Forest Modeling and Analysis - HTML
Published by trotsiuk over 1 year ago

r3PG - r3PG 0.1.5

Bug fixed

• update of the r3pg_ll function in the vignette #89. There were wrong default parameters used.
• new mcmc run for the vignette.

New function and data sets

Major changes

• constrain the frost_days to the maximum days in month prepare_climate #68. Additionaly, in the main Fortran program f_frost is now calculated using the number of days per month (not standard 30 days as in original program). Consequently this lead to the deviation in the output of biomass to the third digit (see tests).

Minor changes

• improved checks for the climate data (whether within hard ranges) #90

Biosphere - Forest Modeling and Analysis - HTML
Published by trotsiuk almost 2 years ago

r3PG - r3PG 0.1.4

This is a minor update of r3PG.

Bug fixed

• minor bug fixes for the prepare_input.R, prepare_climate.R, prepare_sizeDist.R #69
• ensuring that thinning values are withing plausible range prepare_thinning.R #75
• correct ordering of species in prepare_thinning.R #70
• insuring that the cumulative volume is not decreasing md_3PG.f95 #63
• likelihood function in the vignette contained wrong error values r3pg_ll #54
• adjusting the vignette for the new multidplyr version #47

New function and data sets

• get_parameters Gets parameters sets for species from published studies
• param.db Data.frame containing all parameters from the literature review.
• prepare_site to check whether the site data are within the plausible range #73.
• prepare_species to check whether the species data are within the plausible range #73.

Minor changes

• adding the LICENSE
• renaming and exporting the param.default, var.default and sizedist.default internal data

Biosphere - Forest Modeling and Analysis - HTML
Published by trotsiuk almost 3 years ago

r3PG - r3PG 0.1.3

Bug fixed

• continue simulation even if one of the cohort was removed earlier (was only an issue if correct_bias = 1)
• simulation if one of the cohort appear later (sensu regeneration)

Minor changes

• re-arangement some of the variables in the fortran code (no effect on input/output)

Biosphere - Forest Modeling and Analysis - HTML
Published by trotsiuk about 4 years ago

r3PG - r3PG 0.1.2

Minor changes

• check with valgrind for memory allocation.

Biosphere - Forest Modeling and Analysis - HTML
Published by trotsiuk almost 5 years ago

r3PG - r3PG 0.1.1

Minor changes

• adjusting src/Makevars to avoid failures with parallel makes
• small typos in the description files

Biosphere - Forest Modeling and Analysis - HTML
Published by trotsiuk almost 5 years ago

r3PG - r3PG 0.1.0

This is a first stable release available also on CRAN. The main functionality includes:

• simulating forest growth with 3-PGpjs (single species, even aged) and 3-PGmix (mixed, uneven aged)
• adjusting size distribution due to Jens inequality
• calculating delta13C
• preparing the input data

Biosphere - Forest Modeling and Analysis - HTML
Published by trotsiuk almost 5 years ago