motus - motus 6.1.1

• Add support for Sigma Eight receivers

Biosphere - Avian Monitoring and Analysis - R
Published by steffilazerte 11 months ago

motus - motus 6.1.0

• fix bugs in tagme()
  • tagme(dir = ...) now correctly downloads projects as well as receivers and
    respects the skipXXX arguments
  • tagme() for receivers now skips node downloads if receiver is not a SensorStation
  • tagme() fails gracefully if the directory specified does not exist
• tagme(new = TRUE) now starts a download immediately
• Add srvTimeout() to specify the server timeout limit
• Clean up helper functions sunRiseSet() and timeToSunriset()
  • sunRiseSet() now required to run timeToSunriset()
  • Changed function argument names for clarity
• Replace use of ggmap with ggspatial for creating plots with static maps.
• Clean up docs for tagSum()
• Add helper function tagmeSample() for an in-memory connection to the sample
  data base for running examples
• Remove any functions that rely on deprecating spatial functions
• Remove year, month, day fields from activity tables.
• Standardize names in docs and examples
• Update tests internally
• Remove placeholder for French documents (will add back in once we get translations)

Biosphere - Avian Monitoring and Analysis - R
Published by steffilazerte about 1 year ago

motus - motus v6.0.1

Bug fix

• Fix bug in xxxRunsFilter() functions resulting in the inability to correctly return the filter id

Biosphere - Avian Monitoring and Analysis - R
Published by steffilazerte over 2 years ago

motus - motus v6.0.0

Potential breaking change

• Changed internal method for loading SQLite databases. Now uses standard method
  with DBI::dbConnect(). Previously, users applying DBI functions to
  databases loaded with tagme() had to use the $con sub-element of the connection.
  $con should no longer be used (it will result in an error).

Functions removed

• Remove functions safeSQL(), sqliteToRDS()

Bug fixes

• fixed bug in deprecateBatches() which caused an error when removing deprecated
  batches from receivers.

Other

• Updated internal code for logging messages
• Now use simple wrappers for DBI::dbExecute() and DBI::dbGetQuery(), using
  glue::glue_sql() to help construct statements.

Biosphere - Avian Monitoring and Analysis - R
Published by steffilazerte over 2 years ago

motus - motus v5.0.0

New features

• New allruns and allrunsGPS views for quicker first passes of the data with
  large datasets
• New field/column attachment in tagDeps table
• New field/column numGPSfix in activity and activityAll tables
• New field/columns stationName and stationID in recvDeps tables
• gpsAll() and activityAll() functions allow downloading complete records
  of GPS points and Activity
• Deprecated batches are now returned to a new table deprecated on tagme()
• deprecateBatches() function to fetch and (optionally) remove deprecated batches
  from all relevant tables

Bug fixes

• fixed bug in filterByActivity() resulting in NA probabilities
• fixed bug in getGPS() which crashed if ts had been converted to date/time format

Biosphere - Avian Monitoring and Analysis - R
Published by steffilazerte about 3 years ago

motus - motus v4.0.5

Bug fixes

• removed not null constraint on tsEnd in nodeDeps (v4.0.5)
• fixed bug resulting in occasional unending download loop of GPS fixes for receivers (v4.0.4)
• fixed bug resulting in error "no applicable method for 'db_has_table'..." (v4.0.3)

Biosphere - Avian Monitoring and Analysis - R
Published by steffilazerte about 4 years ago

motus - motus v4.0.2

Bug fixes

• fixed rounding error in filterByActivity() resulting in mismatched hourBins
• fixed incorrect receiver types and model assignment for CTT receivers

Biosphere - Avian Monitoring and Analysis - R
Published by steffilazerte over 4 years ago

motus - motus v4.0.0

Small Changes

• Add test to metadata in tagDeps table to identify test deployments
  (tagDeployTest in alltags and alltagsGPS views)
• Add age and sex to metadata in tagDeps table
• For CTT SensorStation V2
  • Add lat_mean, lon_mean, and n_fixes to gps table
  • Add nodets, firmware, solarVolt, solarCurrent, solarCurrentCumul, lat, and lon to nodeData table
  • Add validated to hits table

Bug fixes

• Downloading hits no longer fails if extra columns are supplied by the server

Internal changes

• Internal workings of major motusUpdateXXX() functions split into multiple
  smaller functions to make testing more efficient
• Added mockery package for mock testing

Biosphere - Avian Monitoring and Analysis - R
Published by steffilazerte over 4 years ago

motus - Version 3.1.0

Small Changes

• Receiver downloads now have similar progress messages to Project downloads
• Move GPS fields from alltags to alltagsGPS
• New function getGPS() adds GPS fields to data
• Remove NOT NULL constraint on motusTagIDs in ambiguous tag view

Bug fixes

• Receivers updating to the new version errored on the download start
• Allow renaming (if possible) of large databases on data updates
• Continue checking for activity/nodeData even if first batch returns 0
• nodeDataId is corrected to nodeDataID
• Warn users with custom views if they need to be removed prior to updating

Biosphere - Avian Monitoring and Analysis - R
Published by steffilazerte almost 5 years ago

motus - Version 3.0.0

Big Changes

• Switch to data version 2
  • Includes new CTT antennas
  • Includes nodeData and nodeDeps tables for node related data and metadata.

Small Changes

• Replace all cat() with message() (now suppressible)
• Add recvUtcOffset and tsCorrected to alltags view
• Add gpsID to gps table, gpsID is now the primary key and index

Bug fixes

• Fixed bug where tagme(..., countOnly = TRUE) failed

Biosphere - Avian Monitoring and Analysis - R
Published by steffilazerte over 5 years ago

motus - Version 2.0.0

Big Changes

• Combined motus and motusClient packages

New Features

• New function activity() adds hit activity for batches to a new activity table in the SQLite database. This is useful for detecting 'noisy' periods where hits may be unreliable.
• New function filterByActivity() allows users to create custom filters using data from the activity table.
• Added a NEWS.md file to track changes to the package
• Added support for httr for server queries
• Added ?motus package documentation
• Added unit testing

Bug Fixes

• Fix references to ggmap to avoid having to get Google API keys

Other

• Moved dependencies to import rather than depend, to improve attach times, and reduce conflict with user-attached packages (note that dplyr will have to be loaded by users now)
• All examples are tested

Biosphere - Avian Monitoring and Analysis - R
Published by denislepage over 5 years ago

motus - version 1.0.0

Biosphere - Avian Monitoring and Analysis - R
Published by denislepage over 6 years ago