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Change","sub_category":"Earth and Climate Modeling","monthly_downloads":0,"total_dependent_repos":0,"total_dependent_packages":0,"readme":"Atlas\n=====\n\n[![atlas release version](https://img.shields.io/github/release/ecmwf/atlas.svg)](https://github.com/ecmwf/atlas/releases/latest)\n[![build](https://github.com/ecmwf/atlas/actions/workflows/build.yml/badge.svg)](https://github.com/ecmwf/atlas/actions/workflows/build.yml)\n[![codecov](https://codecov.io/gh/ecmwf/atlas/branch/develop/graph/badge.svg)](https://codecov.io/gh/ecmwf/atlas)\n\nProject home: https://confluence.ecmwf.int/display/ATLAS  \nContact: Willem Deconinck (willem.deconinck@ecmwf.int)  \nPublication:\n   \u003e  [Deconinck et al, 2017](https://doi.org/10.1016/j.cpc.2017.07.006) --- \n   \u003e  Atlas: A library for numerical weather prediction and climate modelling\n\nAtlas is a ECMWF library for parallel data-structures supporting unstructured\ngrids and function spaces, with the aim to investigate alternative more scalable\ndynamical core options for Earth System models, and to support modern interpolation\nand product generation software\n\nAtlas is predominantly C++ code, with main features available to Fortran codes\nthrough a F2003 interface. It requires some flavour of Unix (such as Linux).\nIt is known to run on a number of systems, some of which are directly supported\nby ECMWF.\n\nRequirements\n------------\n\nTested compilers include:\n\n- GCC 4.9.1, 5.3.0, 6.3.0, 7.2.0\n- Intel 15.0.2, 16.0.3, 17, 18\n- CCE 8.4.5, 8.5.8, 8.6.2\n- PGI-Fortran 17.7 combined with GNU-C/C++ 6.3\n- PGI 17.7\n\nKnown compilers to fail include:\n\n- PGI-Fortran 17.10, 18.1\n\nRequired dependencies:\n\n- CMake --- For use and installation see http://www.cmake.org/\n- ecbuild --- ECMWF library of CMake macros\n- eckit (with MPI support) --- C++ support library\n\nRecommended dependencies:\n\n- fckit --- For enabling Fortran interfaces\n- python (only when Fortran bindings are required)\n\nOptional dependencies:\n\n- gridtools-storage --- For GPU interoperability\n- transi --- For enabling IFS spherical harmonics transforms ( not open-source )\n- CGAL --- For enabling Delaunay triangulation of unstructured grids\n- Eigen3 -- For certain linear algebra operations\n- FFTW -- For enabling inverse spherical harmonics transforms (TransLocal)\n\nInstallation\n------------\n\nAtlas employs an out-of-source build/install based on CMake.\n\nMake sure ecbuild, eckit and fckit are installed and the ecbuild\nexecutable script is found ( `which ecbuild` ). Following environment variables\nhelp the build system to detect the right dependencies:\n\n```bash\n# For finding eckit\nECKIT_PATH               # Path to eckit prefix\n\n# For finding fckit\nFCKIT_PATH               # Path to fckit prefix\n```\n\nOther environment variables that could be required for optional features:\n\n```bash\n# For finding gridtools-storage\nGRIDTOOLS_STORAGE_PATH   # Path to gridtools-storage prefix\n\n# For finding transi\nTRANSI_PATH              # Path to transi prefix\n\n# For finding CGAL\nBOOST_ROOT               # Path to Boost prefix\nCGAL_DIR                 # Path to directory containing CGALConfig.cmake\nEigen3_DIR               # Path to directory containing Eigen3Config.cmake\nFFTW_PATH                # Path to FFTW prefix\n```\n\nNow proceed with installation as follows\n\n```bash\n# Environment --- Edit as needed\nATLAS_SRC=$(pwd)\nATLAS_BUILD=build\nATLAS_INSTALL=$HOME/local\n\n# 1. Create the build directory:\nmkdir $ATLAS_BUILD\ncd $ATLAS_BUILD\n\n# 2. Run CMake\necbuild --prefix=$ATLAS_INSTALL -- $ATLAS_SRC\n\n# 3. Compile / Install\nmake -j10\nmake install\n\n# 4. Check installation\n$ATLAS_INSTALL/bin/atlas --info\n```\n\nExtra flags maybe added to step 2 to fine-tune configuration.\n\n- `--build=DEBUG|RELEASE|BIT` --- Optimisation level\n  * DEBUG:   No optimisation (`-O0 -g`)\n  * BIT:     Maximum optimisation while remaning bit-reproducible (`-O2 -g`)\n  * RELEASE: Maximum optimisation (`-O3`)\n- `-DENABLE_OMP=OFF` --- Disable OpenMP\n- `-DENABLE_FORTRAN=OFF` --- Disable Compilation of Fortran bindings\n\n\u003e **Note:**\n\u003e By default compilation is done using shared libraries. Some systems have linking\n\u003e problems with static libraries that have not been compiled with `-fPIC`.\n\u003e In this case, also compile atlas using static linking, by adding to step 2:\n    `--static`\n\nRuntime Configuration\n---------------------\n\nAtlas behaviour can be configured through some environment variables with defaults marked in square brackets\n\n- `ATLAS_INFO=\u003c0|[1]\u003e`  --- Control printing of Atlas standard information\n- `ATLAS_DEBUG=\u003c[0]|1\u003e` --- Control printing of Atlas debug information\n- `ATLAS_TRACE=\u003c[0]|1\u003e` --- Control printing of Atlas traces (includes timings)\n\nContributing\n------------\nContributions to Atlas are welcome. In order to do so, please open an issue\nwhere a feature request or bug can be discussed. Then issue a pull request\nwith your contribution. Pull requests must be issued against the develop branch.\n\nCiting Atlas\n------------\nIf you publish work which mentions Atlas, or Atlas has been useful in your research,\nplease cite the following paper:\n\n```bibtex\n@article{DECONINCK2017188,\ntitle = \"Atlas : A library for numerical weather prediction and climate modelling\",\njournal = \"Computer Physics Communications\",\nvolume = \"220\",\npages = \"188 - 204\",\nyear = \"2017\",\nissn = \"0010-4655\",\ndoi = \"https://doi.org/10.1016/j.cpc.2017.07.006\",\nurl = \"http://www.sciencedirect.com/science/article/pii/S0010465517302138\",\nauthor = \"Willem Deconinck and Peter Bauer and Michail Diamantakis and Mats Hamrud and Christian Kühnlein and Pedro Maciel and Gianmarco Mengaldo and Tiago Quintino and Baudouin Raoult and Piotr K. Smolarkiewicz and Nils P. 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