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Change","sub_category":"Climate Data Processing and Analysis","monthly_downloads":1134,"total_dependent_repos":6,"total_dependent_packages":3,"readme":"# daymetr \u003ca href='https://bluegreen-labs.github.io/daymetr/'\u003e\u003cimg src='https://raw.githubusercontent.com/bluegreen-labs/daymetr/master/logo.png' align=\"right\" height=\"139\" /\u003e\u003c/a\u003e\n\n[![R-CMD-check](https://github.com/bluegreen-labs/daymetr/workflows/R-CMD-check/badge.svg)](https://github.com/bluegreen-labs/daymetr/actions)\n[![codecov](https://codecov.io/gh/bluegreen-labs/daymetr/branch/master/graph/badge.svg)](https://app.codecov.io/gh/bluegreen-labs/daymetr)\n[![CRAN\\_Status\\_Badge](https://www.r-pkg.org/badges/version/daymetr)](https://cran.r-project.org/package=daymetr)\n![CRAN\\_Downloads](https://cranlogs.r-pkg.org/badges/grand-total/daymetr)\n\nA programmatic interface to the [Daymet web\nservices](https://daymet.ornl.gov). Allows for easy downloads of Daymet\nclimate data directly to your R workspace or your computer. Routines for\nboth single pixel data downloads and gridded (netCDF) data are provided.\nPlease use the below citation when using the package.\n\n\u003e We received news from Dr. Michele Thornton at the Oak Ridge National Laboratory (ORNL) that the DAYMET API they host will be decommissioned. This change will be effective within weeks (late March 2025) and affect first and foremost the spatial (gridded/tiled) data products, before most likely covering the whole THREDDS data server setup including point based data by the end of the year. We suggest that users of our {daymetr} R package migrate to the NASA EarthData Appeears based API as covered by our [{appeears} R package](https://bluegreen-labs.github.io/appeears/).\n\n## How to cite this package\n\n\u003e Hufkens K., Basler J. D., Milliman T. Melaas E., Richardson A.D. 2018\n\u003e An integrated phenology modelling framework in R: Phenology modelling\n\u003e with phenor. Methods in Ecology \u0026\n\u003e Evolution, 9: 1-10. https://doi.org/10.1111/2041-210X.12970\n\n## Installation\n\n### stable release\n\nTo install the current stable release use a CRAN repository:\n\n``` r\ninstall.packages(\"daymetr\")\nlibrary(\"daymetr\")\n```\n\n### development release\n\nTo install the development releases of the package run the following\ncommands:\n\n``` r\nif(!require(remotes)){install.packages(\"remotes\")}\nremotes::install_github(\"bluegreen-labs/daymetr\")\nlibrary(\"daymetr\")\n```\n\nVignettes are not rendered by default, if you want to include additional\ndocumentation please use:\n\n``` r\nif(!require(remotes)){install.packages(\"remotes\")}\nremotes::install_github(\"bluegreen-labs/daymetr\", build_vignettes = TRUE)\nlibrary(\"daymetr\")\n```\n\n## Use\n\n### Single pixel location download\n\nFor a single site use the following format\n\n``` r\ndownload_daymet(site = \"Oak Ridge National Laboratories\",\n                lat = 36.0133,\n                lon = -84.2625,\n                start = 1980,\n                end = 2010,\n                internal = TRUE)\n```\n\n| Parameter | Description                                                                                                                     |\n| --------- | ------------------------------------------------------------------------------------------------------------------------------- |\n| site      | site name                                                                                                                       |\n| lat       | latitude of the site                                                                                                            |\n| lon       | longitude of the site                                                                                                           |\n| start     | start year of the time series (data start in 1980)                                                                              |\n| end       | end year of the time series (current year - 2 years, use force = TRUE to override)                                              |\n| internal  | logical, TRUE or FALSE, if true data is imported into R workspace otherwise it is downloaded into the current working directory |\n| path      | path where to store the data when not used internally, defaults to tempdir()                                                    |\n| force     | force “out of temporal range” downloads                                                                                         |\n| silent    | suppress the verbose output                                                                                                     |\n\nBatch mode uses similar parameters but you provide a comma separated\nfile with site names and latitude longitude which are sequentially\ndownloaded. The format of the comma separated file is: site name,\nlatitude, longitude.\n\n``` r\ndownload_daymet_batch(file_location = 'my_sites.csv',\n                      start = 1980,\n                      end = 2010,\n                      internal = TRUE)\n```\n\n### Gridded data downloads\n\nFor gridded data use either download\\_daymet\\_tiles() for individual\ntiles or download\\_daymet\\_ncss() for a netCDF subset which is not bound\nby tile limits (but restricted to a 6GB query size).\n\n#### *Tiled data*\n\n``` r\ndownload_daymet_tiles(location = c(36.0133,-84.2625),\n                      tiles = NULL,\n                      start = 1980,\n                      end = 2012,\n                      param = \"ALL\")\n```\n\n| Parameter | Description                                                                                                                                                                                                                                                                                            |\n| --------- | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |\n| location  | vector with a point location c(lat,lon) or top left / bottom right pair c(lat,lon,lat,lon)                                                                                                                                                                                                             |\n| tiles     | vector with tile numbers if location point or top left / bottom right pair is not provided                                                                                                                                                                                                             |\n| start     | start year of the time series (data start in 1980)                                                                                                                                                                                                                                                     |\n| end       | end year of the time series (current year - 2 years, use force = TRUE to override)                                                                                                                                                                                                                     |\n| param     | climate variable you want to download vapour pressure (vp), minimum and maximum temperature (tmin,tmax), snow water equivalent (swe), solar radiation (srad), precipitation (prcp) , day length (dayl). The default setting is ALL, this will download all the previously mentioned climate variables. |\n| path      | path where to store the data, defaults to tempdir()                                                                                                                                                                                                                                                    |\n| silent    | suppress the verbose output                                                                                                                                                                                                                                                                            |\n\nIf only the first set of coordinates is provided the tile in which these\nreside is downloaded. If your region of interest falls outside the scope\nof the DAYMET data coverage a warning is issued. If both top left and\nbottom right coordinates are provided all tiles covering the region of\ninterst are downloaded. I would caution against downloading too much\ndata, as file sizes do add up. So be careful how you specify your region\nof interest.\n\n#### *netCDF subset (ncss) data*\n\n``` r\ndownload_daymet_ncss(location = c(36.61,-85.37,33.57,-81.29),\n                     start = 1980,\n                     end = 1980,\n                     param = \"tmin\")\n```\n\n| Parameter | Description                                                                                                                                                                                                                                                                                            |\n| --------- | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |\n| location  | bounding box extent defined as top left / bottom right pair c(lat,lon,lat,lon)                                                                                                                                                                                                                         |\n| start     | start year of the time series (data start in 1980)                                                                                                                                                                                                                                                     |\n| end       | end year of the time series (current year - 2 years, use force = TRUE to override)                                                                                                                                                                                                                     |\n| param     | climate variable you want to download vapour pressure (vp), minimum and maximum temperature (tmin,tmax), snow water equivalent (swe), solar radiation (srad), precipitation (prcp) , day length (dayl). The default setting is ALL, this will download all the previously mentioned climate variables. |\n| mosaic    | tile mosaic to use, defaults to “na” for North America (use “pr” for Puerto Rico and “hi” for Hawaii)                                                                                                                                                                                                  |\n| path      | path where to store the data, defaults to tempdir()                                                                                                                                                                                                                                                    |\n| silent    | suppress the verbose output                                                                                                                                                                                                                                                                            |\n\nKeep in mind that the bounding box is defined by the minimum (square)\nbounding box in a Lambert Conformal Conic (LCC) projection as defined by\nthe provided geographic coordinates. In general the query area will be\nlarger than the requested location. For more information I refer to\n[Daymet documentation](https://daymet.ornl.gov/web_services.html) on the\nweb service.\n\n## Acknowledgements\n\nThis project was supported by the National Science Foundation’s\nMacro-system Biology Program (awards EF-1065029 and EF-1702697)  and the Marie Skłodowska-Curie Action (H2020 grant 797668). Logo design elements are taken from the FontAwesome library according to [these terms](https://fontawesome.com/license), where the globe element was inverted and intersected.\n\n","funding_links":[],"readme_doi_urls":["https://doi.org/10.1111/2041-210X.12970"],"works":{"https://doi.org/10.1111/2041-210X.12970":{"id":"https://openalex.org/W2792442798","doi":"https://doi.org/10.1111/2041-210x.12970","title":"An integrated phenology modelling framework in \u003cscp\u003er\u003c/scp\u003e","display_name":"An integrated phenology modelling framework in \u003cscp\u003er\u003c/scp\u003e","publication_year":2018,"publication_date":"2018-02-13","ids":{"openalex":"https://openalex.org/W2792442798","doi":"https://doi.org/10.1111/2041-210x.12970","mag":"2792442798"},"language":"en","primary_location":{"is_oa":true,"landing_page_url":"https://doi.org/10.1111/2041-210x.12970","pdf_url":"https://rss.onlinelibrary.wiley.com/doi/am-pdf/10.1111/2041-210x.12970","source":{"id":"https://openalex.org/S1131227","display_name":"Methods in Ecology and Evolution","issn_l":"2041-210X","issn":["2041-210X"],"is_oa":true,"is_in_doaj":true,"host_organization":"https://openalex.org/P4310320503","host_organization_name":"Wiley-Blackwell","host_organization_lineage":["https://openalex.org/P4310320503","https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley-Blackwell","Wiley"],"type":"journal"},"license":"publisher-specific, author manuscript","version":"acceptedVersion","is_accepted":true,"is_published":false},"type":"article","type_crossref":"journal-article","open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://rss.onlinelibrary.wiley.com/doi/am-pdf/10.1111/2041-210x.12970","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055971588","display_name":"Koen Hufkens","orcid":"https://orcid.org/0000-0002-5070-8109"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210116558","display_name":"Atmosphere Plant Soil Interactions","ror":"https://ror.org/02aswf736","country_code":"FR","type":"facility","lineage":["https://openalex.org/I15057530","https://openalex.org/I4210091158","https://openalex.org/I4210096859","https://openalex.org/I4210116558"]}],"countries":["BE","FR","US"],"is_corresponding":true,"raw_author_name":"Koen Hufkens","raw_affiliation_string":"Department of Applied Ecology and Environmental Biology, Ghent University, Aquitaine, Belgium; Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA, USA; INRA, UMR ISPA, Villenave d'Ornon, France","raw_affiliation_strings":["Department of Applied Ecology and Environmental Biology, Ghent University, Aquitaine, Belgium","Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA, USA","INRA, UMR ISPA, Villenave d'Ornon, France"]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009086416","display_name":"David Basler","orcid":"https://orcid.org/0000-0002-4068-8319"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Basler","raw_affiliation_string":"Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA, USA","raw_affiliation_strings":["Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA, USA"]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064459178","display_name":"Tom Milliman","orcid":"https://orcid.org/0000-0001-6234-8967"},"institutions":[{"id":"https://openalex.org/I161057412","display_name":"University of New Hampshire","ror":"https://ror.org/01rmh9n78","country_code":"US","type":"education","lineage":["https://openalex.org/I161057412","https://openalex.org/I2800453862"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tom Milliman","raw_affiliation_string":"Earth Systems Research Center, University of New Hampshire, Durham, NH, USA","raw_affiliation_strings":["Earth Systems Research Center, University of New Hampshire, Durham, NH, USA"]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076187018","display_name":"E. 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