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Analysis and Metrics","monthly_downloads":0,"total_dependent_repos":0,"total_dependent_packages":0,"readme":"# __ENMTML__ \u003cimg src=\"https://github.com/andrefaa/ENMTML/blob/master/man/figures/logo.png\" align=\"right\" width=\"170\" /\u003e\r\n[![DOI](https://zenodo.org/badge/DOI/10.1016/j.envsoft.2019.104615.svg)](https://doi.org/10.1016/j.envsoft.2019.104615)\r\n[![License](https://img.shields.io/badge/license-GPL%20%28%3E=%203%29-lightgrey.svg?style=flat)](http://www.gnu.org/licenses/gpl-3.0.html)\r\n[![Lifecycle:manturing](https://img.shields.io/badge/lifecycle-manturing-blue.svg)](https://www.tidyverse.org/lifecycle/#manturing)\r\n\r\n## An R package for an integrated construction of Ecological Niche Models\r\n\r\n### Installation\r\n```ruby\r\nif (!\"remotes\"%in%installed.packages()){install.packages(\"remotes\")}  \r\nremotes::install_github(\"cran/rgeos\")\r\nremotes::install_github(\"cran/rgdal\")\r\nremotes::install_github(\"andrefaa/ENMTML\")  \r\n```\r\n### Why **ENMTML**?  \r\n**ENMTML** stands for **E**cological **N**iche **M**odelling within **T**he **M**eta**L**and EcologyLab.  \r\nIt is a product from the [Prof. Paulo De Marco's lab in Ubiversidade Federal de Goiás, Brasil](https://themetaland.wixsite.com/themetaland).\r\n\r\nIt puts together a lot of our work with ENM's in the past years in a single script, with the objective of making it easy to use but also covering the complex methodological development that exists in the field.\r\n\r\n### What is the main objective of **ENMTML**?   \r\nWe believe there is a division within ENM/SDM.\r\n\r\nDevelopers are constantly coming up with better methods, which causes those improvements to be scattered throughout literature and not always reach users.  \r\nThis effect is potentialized as novelties are sometimes built within different R-packages, which demand users to also have some comprehension of programming. \r\n \r\nThe main objective of **ENMTML** is to minimize those issues. \r\n \r\nWe gather here most of the methodological development on ENM and present them to users in a single function with arguments related to those methodological decisions. \r\n \r\nWe bring together several alternatives for: \r\n\r\n* Variable collinearity control  \r\n* Bias control  \r\n* Accessible area delimitation  \r\n* Pseudo-absence allocation  \r\n* Data partition  \r\n* A wide variety of algorithms   \r\n* Thresholds  \r\n* Evaluation metrics  \r\n* [Deal with overprediction (MSDM)](https://github.com/sjevelazco/MSDM)  \r\n* Ensemble models  \r\n* Projection to a different time period/spatial extent (MOP calculation included)  \r\n\r\n### What if I couldn't find what I was looking for in **ENMTML**?  \r\n\r\n\r\n#### Please let us know!\r\n\r\nWe are regularly working on the package and are very interested in incorporating new functionalities to the package. \r\n\r\n### Last but not least  \r\n**There are no defaults!** \r\n\r\nWe believe **every ENM should be carefully planned and every decision matters!**  \r\n\r\nWe attempted to present a solid background for all methodological alternatives in our package, you can find in our article specific details on where to find a detailed description of the included methods.\r\n\r\n\r\n### CITATION:\r\n**Andrade, A.F.A., Velazco, S.J.E., De Marco Jr, P., 2020. ENMTML: An R package for a straightforward construction of complex ecological niche models. Environmental Modelling \u0026 Software 125, 104615. https://doi.org/10.1016/j.envsoft.2019.104615**\r\n  \r\n  \r\n\u003e Please report bugs [here](https://github.com/andrefaa/ENMTML/issues) or send an e-mail to andrefaandrade@gmail.com or sjevelazco@gmail.com! \r\n","funding_links":[],"readme_doi_urls":["https://doi.org/10.1016/j.envsoft.2019.104615"],"works":{"https://doi.org/10.1016/j.envsoft.2019.104615":{"id":"https://openalex.org/W2997881419","doi":"https://doi.org/10.1016/j.envsoft.2019.104615","title":"ENMTML: An R package for a straightforward construction of complex ecological niche models","display_name":"ENMTML: An R package for a straightforward construction of complex ecological niche 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