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Total](http://cranlogs.r-pkg.org/badges/grand-total/icesDatras)](https://cran.r-project.org/package=icesDatras)\r\n[![License](https://img.shields.io/badge/license-GPL%20(%3E%3D%202)-blue.svg)](https://www.gnu.org/licenses/gpl-3.0.en.html)\r\n\r\n[\u003cimg align=\"right\" alt=\"ICES Logo\" width=\"17%\" height=\"17%\" src=\"https://ices.dk/_layouts/15/1033/images/icesimg/iceslogo.png\"\u003e](http://ices.dk)\r\n\r\nicesDatras\r\n==========\r\n\r\nicesDatras provides R functions that access the\r\n[web services](https://datras.ices.dk/WebServices/Webservices.aspx) of the\r\n[ICES](http://ices.dk) [DATRAS](http://datras.ices.dk) trawl survey database.\r\n\r\nicesDatras is implemented as an [R](https://www.r-project.org) package and\r\navailable on [CRAN](https://cran.r-project.org/package=icesDatras).\r\n\r\nDATRAS database support\r\n-----------------------\r\n\r\nIf you have questions relating to the ICES DATRAS database or web services please email: DatrasAdministration@ices.dk\r\n\r\nInstallation\r\n------------\r\n\r\nicesDatras can be installed from CRAN using the `install.packages` command:\r\n\r\n```R\r\ninstall.packages(\"icesDatras\")\r\n```\r\n\r\nUsage\r\n-----\r\n\r\nFor a summary of the package:\r\n\r\n```R\r\nlibrary(icesDatras)\r\n?icesDatras\r\n```\r\nInformation on available surveys in DATRAS: \r\n\r\n```R\r\ngetSurveyList()\r\n\r\n```\r\n\r\nWorking Examples \r\n-----\r\n\r\nExtracting survey haul (HH), lenght (HL) and agebased (CA) data from a given survey, quarter and year, \r\ni.e. North Sea IBTS, Quarter 1, 2019:\r\n\r\n```R\r\nsurvey \u003c- \"NS-IBTS\"\r\nyear \u003c- 2019\r\nquarter \u003c- 1\r\n\r\nHH \u003c- getHHdata(survey, year, quarter) \r\nHL \u003c- getHLdata(survey, year, quarter) \r\nCA \u003c- getCAdata(survey, year, quarter) \r\n```\r\n\r\nExtracting catch weight of cod from the Baltic Sea survey, year 2019, quarter 1.  \r\nNote: The icesVocab package provides `findAphia`, a function to look up Aphia species codes.    \r\n\r\n```R\r\nlibrary(icesVocab)\r\naphia \u003c- icesVocab::findAphia(\"cod\") \r\n\r\nsurvey \u003c- \"BITS\"\r\nyears \u003c- 2019\r\nquarters \u003c- 1\r\ncodwgt \u003c- getCatchWgt(survey, years, quarters, aphia)\r\n\r\n```\r\n\r\nGet catch weight for Baltic cod from all quarters  in a small timeseries (e.g. 1991 to 2011) and plot the weight in a sipmle graph per quarter.\r\n\r\n```R\r\nlibrary(icesVocab)\r\nlibrary(ggplot2)\r\n\r\naphia \u003c- icesVocab::findAphia(\"cod\") \r\n\r\nsurvey \u003c- \"BITS\"\r\nyears \u003c- 1991:2011\r\nquarters \u003c- 1:4\r\ncodwgt \u003c- getCatchWgt(survey, years, quarters, aphia)\r\ncodwgt %\u003e% ggplot(aes(x = Year, y = CatchWgt, colour= Quarter)) + geom_point()\r\n```\r\n\r\nReferences\r\n----------\r\n\r\nICES DATRAS database:\r\nhttp://datras.ices.dk\r\n\r\nICES DATRAS web services:\r\nhttps://datras.ices.dk/WebServices/Webservices.aspx\r\n\r\nAphiaID of marine organisms: \r\nhttp://www.marinespecies.org/index.php\r\n\r\n\r\nDevelopment\r\n-----------\r\n\r\nicesDatras is developed openly on\r\n[GitHub](https://github.com/ices-tools-prod/icesDatras).\r\n\r\nFeel free to open an\r\n[issue](https://github.com/ices-tools-prod/icesDatras/issues) there if you\r\nencounter problems or have suggestions for future versions.\r\n\r\nThe current development version can be installed using:\r\n\r\n```R\r\nlibrary(devtools)\r\ninstall_github(\"ices-tools-prod/icesDatras\")\r\n```\r\n\r\n","funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["fisheries"],"project_url":"https://ost.ecosyste.ms/api/v1/projects/46052","html_url":"https://ost.ecosyste.ms/projects/46052"}