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Wildlife","monthly_downloads":603,"total_dependent_repos":0,"total_dependent_packages":0,"readme":"---\noutput: github_document\n---\n\n\u003c!-- README.md is generated from README.Rmd. Please edit that file --\u003e\n\n```{r, include = FALSE}\nknitr::opts_chunk$set(\n  collapse = TRUE,\n  comment = \"#\u003e\",\n  fig.path = \"man/figures/README-\",\n  out.width = \"100%\"\n)\n```\n\n# camtrapdp\n\n\u003c!-- badges: start --\u003e\n[![CRAN status](https://www.r-pkg.org/badges/version/camtrapdp)](https://CRAN.R-project.org/package=camtrapdp)\n[![CRAN checks](https://badges.cranchecks.info/worst/camtrapdp.svg)](https://cran.r-project.org/web/checks/check_results_camtrapdp.html)\n[![R-CMD-check](https://github.com/inbo/camtrapdp/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/inbo/camtrapdp/actions/workflows/R-CMD-check.yaml)\n[![codecov](https://codecov.io/gh/inbo/camtrapdp/branch/main/graph/badge.svg)](https://app.codecov.io/gh/inbo/camtrapdp/)\n[![repo status](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)\n[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.11490269.svg)](https://doi.org/10.5281/zenodo.11490269)\n\u003c!-- badges: end --\u003e\n\nCamtrapdp is an R package to read and manipulate Camera Trap Data Packages (Camtrap DP). [Camtrap DP](https://camtrap-dp.tdwg.org) is a data exchange format for camera trap data. With camtrapdp you can read, filter and transform data (including to [Darwin Core](https://dwc.tdwg.org)) before further analysis in e.g. [camtraptor](https://inbo.github.io/camtraptor/) or [camtrapR](https://cran.r-project.org/package=camtrapR).\n\nTo get started, see:\n\n- [Function reference](https://inbo.github.io/camtrapdp/reference/index.html): overview of all functions.\n\n## Installation\n\nInstall the latest released version from CRAN:\n\n```{r, eval = FALSE}\ninstall.packages(\"camtrapdp\")\n```\n\nOr the development version from [GitHub](https://github.com/inbo/camtrapdp):\n\n```{r, eval = FALSE}\n# install.packages(\"devtools\")\ndevtools::install_github(\"inbo/camtrapdp\")\n```\n\n## Usage\n\nWith camtrapdp you can **read** a Camtrap DP dataset into your R environment:\n\n```{r}\nlibrary(camtrapdp, warn.conflicts = FALSE)\n\nfile \u003c- \"https://raw.githubusercontent.com/tdwg/camtrap-dp/1.0/example/datapackage.json\"\nx \u003c- read_camtrapdp(file)\nx\n```\n\n`read_camtrapdp()` will automatically **upgrade** an older version of Camtrap DP to the latest version. It will also make the data easier to use, by assigning taxonomic information (found in the metadata) to the observations and `eventID`s (found in the observations) to the media.\n\nTo **access** the data, use one of the [accessor functions](https://inbo.github.io/camtrapdp/reference/index.html#accessor-and-assignment-functions) like `locations()`:\n\n```{r}\nlocations(x)\n```\n\nYou can also **filter** data with one of the [filter functions](https://inbo.github.io/camtrapdp/reference/index.html#filter-functions), which automatically filter the related data. For example, here we filter observations on scientific name(s) and return the associated events in that subset:\n\n```{r}\nx %\u003e%\n  filter_observations(\n    scientificName %in% c(\"Martes foina\", \"Mustela putorius\")\n  ) %\u003e%\n  events()\n```\n\nFor more functionality, see the [function reference](https://inbo.github.io/camtrapdp/reference/index.html).\n\n## GBIF pipeline\n\nThe Global Biodiversity Information Facility ([GBIF](https://www.gbif.org/)) uses camtrapdp to process Camera Trap Data Packages published with the Integrated Publishing Toolkit ([IPT](https://www.gbif.org/ipt)). Datasets are first read with `read_camtrapdp()` and then converted to Darwin Core with `write_dwc()` and EML with `write_eml()`. See the [Camtrap DP pipeline repository](https://github.com/gbif/camtrap-dp-pipeline/tree/master/docker) for details.\n\n## Meta\n\n- We welcome [contributions](https://inbo.github.io/camtrapdp/CONTRIBUTING.html) including bug reports.\n- License: MIT\n- Get [citation information](https://inbo.github.io/camtrapdp/authors.html#citation) for camtrapdp in R doing `citation(\"camtrapdp\")`.\n- Please note that this project is released with a [Contributor Code of Conduct](https://inbo.github.io/camtrapdp/CODE_OF_CONDUCT.html). By participating in this project you agree to abide by its terms.\n","funding_links":[],"readme_doi_urls":["https://doi.org/10.5281/zenodo.11490269"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["data-access","animal-movement","animal-tracking","biologging","fish","lifewatch","camera-traps","frictionlessdata","opencpu","invasive-species"],"project_url":"https://ost.ecosyste.ms/api/v1/projects/350826","html_url":"https://ost.ecosyste.ms/projects/350826"}