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Change","sub_category":"Climate Data Standards","monthly_downloads":14014,"total_dependent_repos":4,"total_dependent_packages":1,"readme":"cfdm\n====\n\nA Python reference implementation of the CF data model.\n\n[![GitHub tag (latest by date)](https://img.shields.io/github/v/tag/NCAS-CMS/cfdm?color=000000\u0026label=latest%20version)](https://ncas-cms.github.io/cfdm/Changelog.html)\n[![PyPI](https://img.shields.io/pypi/v/cfdm?color=000000)](https://pypi.org/project/cfdm/)\n[![Conda](https://img.shields.io/conda/v/conda-forge/cfdm?color=000000)](https://anaconda.org/conda-forge/cfdm)\n\n[![Conda](https://img.shields.io/conda/pn/conda-forge/cfdm?color=2d8659)](https://ncas-cms.github.io/cfdm/installation.html#operating-systems)\n[![Website](https://img.shields.io/website?color=2d8659\u0026down_message=online\u0026label=documentation\u0026up_message=online\u0026url=https%3A%2F%2Fncas-cms.github.io%2Fcfdm%2F)](https://ncas-cms.github.io/cfdm/index.html)\n[![GitHub](https://img.shields.io/github/license/NCAS-CMS/cfdm?color=2d8659)](https://github.com/NCAS-CMS/cfdm/blob/main/LICENSE)\n\n[![Codecov](https://img.shields.io/codecov/c/github/NCAS-CMS/cfdm?color=006666)](https://codecov.io/gh/NCAS-CMS/cfdm)\n[![GitHub Workflow Status](https://img.shields.io/github/actions/workflow/status/NCAS-CMS/cfdm/run-test-suite.yml?branch=main?color=006666\u0026label=test%20suite%20workflow)](https://github.com/NCAS-CMS/cfdm/actions)\n\n[![fair-software.eu](https://img.shields.io/badge/fair--software.eu-%E2%97%8F%20%20%E2%97%8F%20%20%E2%97%8F%20%20%E2%97%8F%20%20%E2%97%8B-yellow)](https://fair-software.eu)\n\n#### References\n\n[![Website](https://img.shields.io/website?down_color=264d73\u0026down_message=10.21105%2Fjoss.02717\u0026label=JOSS\u0026up_color=264d73\u0026up_message=10.21105%2Fjoss.02717\u0026url=https:%2F%2Fjoss.theoj.org%2Fpapers%2F10.21105%2Fjoss.02717%2Fstatus.svg)](https://doi.org/10.21105/joss.02717)\n[![Website](https://img.shields.io/website?color=264d73\u0026down_message=10.5281%2Fzenodo.3894524\u0026label=DOI\u0026up_message=10.5281%2Fzenodo.3894524\u0026url=https%3A%2F%2Fzenodo.org%2Frecord%2F3894524%23.Xuf2uXVKjeQ)](https://doi.org/10.5281/zenodo.3894524)\n[![Website](https://img.shields.io/website?down_color=264d73\u0026down_message=10.5194%2Fgmd-10-4619-2017\u0026label=GMD\u0026up_color=264d73\u0026up_message=10.5194%2Fgmd-10-4619-2017\u0026url=https%3A%2F%2Fwww.geosci-model-dev.net%2F10%2F4619%2F2017%2F)](https://www.geosci-model-dev.net/10/4619/2017/)\n\nDocumentation\n=============\n\nhttps://ncas-cms.github.io/cfdm\n\nDask\n====\n\nFrom version 1.11.2.0 the `cfdm` package uses\n[Dask](https://docs.dask.org) for all of its data manipulations.\n\nInstallation\n============\n\nhttps://ncas-cms.github.io/cfdm/installation\n\nTutorial\n========\n\nhttps://ncas-cms.github.io/cfdm/tutorial\n\nFunctionality\n=============\n\nThe ``cfdm`` package fully implements the [CF data\nmodel](https://cfconventions.org/cf-conventions/cf-conventions.html#appendix-CF-data-model)\nfor its internal data structures and so is able to process any\nCF-compliant dataset. It is not strict about CF-compliance, however,\nso that partially conformant datasets may be ingested from existing\ndatasets and written to new datasets. This is so that datasets which\nare partially conformant may nonetheless be modified in memory.\n\nThe central elements defined by the CF data model are the **field\nconstruct**, which corresponds to CF-netCDF data variable with all of\nits metadata; and the **domain contruct**, which may be the domain of\na field construct or corresponds to a CF-netCDF domain variable with\nall of its metadata.\n\nA simple example of reading a field construct from a file and\ninspecting it:\n\n    \u003e\u003e\u003e import cfdm\n    \u003e\u003e\u003e f = cfdm.read('file.nc')\n    \u003e\u003e\u003e f\n    [\u003cField: air_temperature(time(12), latitude(64), longitude(128)) K\u003e]\n    \u003e\u003e\u003e print(f[0])\n    Field: air_temperature (ncvar%tas)\n    ----------------------------------\n    Data            : air_temperature(time(12), latitude(64), longitude(128)) K\n    Cell methods    : time(12): mean (interval: 1.0 month)\n    Dimension coords: time(12) = [0450-11-16 00:00:00, ..., 0451-10-16 12:00:00] noleap\n                    : latitude(64) = [-87.8638, ..., 87.8638] degrees_north\n                    : longitude(128) = [0.0, ..., 357.1875] degrees_east\n                    : height(1) = [2.0] m\n\nThe ``cfdm`` package can:\n\n* read field and domain constructs from netCDF, CDL, and Zarr datasets\n  with a choice of netCDF backends, and in local, http, and s3\n  locations,\n* be fully flexible with respect to dataset storage chunking,\n* create new field and domain constructs in memory,\n* write and append field and domain constructs to netCDF and Zarr v3\n  datasets on disk, with control over HDF5 internal metadata,\n* read, write, and manipulate UGRID mesh topologies,\n* read, write, and manipulate HEALPix grids,\n* read, write, and create coordinates defined by geometry cells,\n* read and write netCDF4 string data-type variables,\n* read, write, and create netCDF and CDL datasets containing\n  hierarchical groups,\n* inspect field and domain constructs,\n* test whether two constructs are the same,\n* modify field and domain construct metadata and data,\n* create subspaces of field and domain constructs, from indices or\n  metadata values,\n* incorporate, and create, metadata stored in external files, and\n* read, write, and create data that have been compressed by convention\n  (i.e. ragged or gathered arrays, or coordinate arrays compressed by\n  subsampling), whilst presenting a view of the data in its\n  uncompressed form,\n* read and write that data that are quantized to eliminate false\n  precision.\n\nCommand line utility\n====================\n\nDuring installation the `cfdump` command line tool is also installed,\nwhich generates text descriptions of the field constructs contained in\na netCDF dataset:\n\n    $ cfdump file.nc\n    Field: air_temperature (ncvar%tas)\n    ----------------------------------\n    Data            : air_temperature(time(12), latitude(64), longitude(128)) K\n    Cell methods    : time(12): mean (interval: 1.0 month)\n    Dimension coords: time(12) = [0450-11-16 00:00:00, ..., 0451-10-16 12:00:00] noleap\n                    : latitude(64) = [-87.8638, ..., 87.8638] degrees_north\n                    : longitude(128) = [0.0, ..., 357.1875] degrees_east\n                    : height(1) = [2.0] m\n\nTests\n=====\n\nTests are run from within the ``cfdm/test`` directory:\n\n    $ python run_tests.py\n\nCitation\n========\n\nIf you use cfdm, either as a stand-alone application or to provide a CF\ndata model implementation to another software library, please consider\nincluding the reference:\n\nHassell et al., (2020). cfdm: A Python reference implementation of the\nCF data model. Journal of Open Source Software, 5(54), 2717,\nhttps://doi.org/10.21105/joss.02717\n\n```\n@article{Hassell2020,\n  doi = {10.21105/joss.02717},\n  url = {https://doi.org/10.21105/joss.02717},\n  year = {2020},\n  publisher = {The Open Journal},\n  volume = {5},\n  number = {54},\n  pages = {2717},\n  author = {David Hassell and Sadie L. Bartholomew},\n  title = {cfdm: A Python reference implementation of the CF data model},\n  journal = {Journal of Open Source Software}\n}\n```\n","funding_links":[],"readme_doi_urls":["https://doi.org/10.21105/joss.02717","https://doi.org/10.5281/zenodo.3894524"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["atmospheric-science","cfdm","cfunits","earth-science","pp","um","archival","udunits2","units","earth-system-model"],"project_url":"https://ost.ecosyste.ms/api/v1/projects/329656","html_url":"https://ost.ecosyste.ms/projects/329656"}