{"id":328122,"name":"cgeniepy","description":"A Python package to analyse the output of cGENIE Earth System Model.","url":"https://github.com/ruiying-ocean/cgeniepy","last_synced_at":"2026-04-28T16:00:50.718Z","repository":{"id":182151877,"uuid":"523869938","full_name":"ruiying-ocean/cgeniepy","owner":"ruiying-ocean","description":"A Python package for analysing the cGENIE model output","archived":false,"fork":false,"pushed_at":"2026-02-03T20:48:12.000Z","size":32513,"stargazers_count":9,"open_issues_count":4,"forks_count":2,"subscribers_count":1,"default_branch":"master","last_synced_at":"2026-03-09T21:36:24.786Z","etag":null,"topics":["cgenie","earth-sciences","earth-system-model","oceanography","python","visualisation"],"latest_commit_sha":null,"homepage":"https://cgeniepy.readthedocs.io/en/latest","language":"ReScript","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/ruiying-ocean.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2022-08-11T21:11:17.000Z","updated_at":"2026-03-05T13:39:14.000Z","dependencies_parsed_at":"2026-02-13T05:31:28.579Z","dependency_job_id":null,"html_url":"https://github.com/ruiying-ocean/cgeniepy","commit_stats":null,"previous_names":["ruiying-ocean/cgeniepy"],"tags_count":34,"template":false,"template_full_name":null,"purl":"pkg:github/ruiying-ocean/cgeniepy","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ruiying-ocean%2Fcgeniepy","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ruiying-ocean%2Fcgeniepy/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ruiying-ocean%2Fcgeniepy/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ruiying-ocean%2Fcgeniepy/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ruiying-ocean","download_url":"https://codeload.github.com/ruiying-ocean/cgeniepy/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ruiying-ocean%2Fcgeniepy/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":30437534,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-03-12T14:34:45.044Z","status":"ssl_error","status_checked_at":"2026-03-12T14:09:33.793Z","response_time":114,"last_error":"SSL_read: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"ruiying-ocean","name":null,"uuid":"38958822","kind":"user","description":"PhD student studying marine system and biogeochemical cycle. Emacs lover.","email":"","website":"www.ruiying.online","location":"Bristol, UK","twitter":"YingRui17","company":"University of Bristol","icon_url":"https://avatars.githubusercontent.com/u/38958822?u=212dc2f678ce58c12575c78851372d1512b83945\u0026v=4","repositories_count":4,"last_synced_at":"2023-07-18T22:42:06.847Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/ruiying-ocean","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-07-18T22:42:07.034Z","updated_at":"2023-07-18T22:42:07.034Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ruiying-ocean","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ruiying-ocean/repositories"},"packages":[],"commits":{"id":9624746,"full_name":"ruiying-ocean/cgeniepy","default_branch":"master","total_commits":537,"total_committers":4,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":134.25,"dds":0.06331471135940414,"past_year_total_commits":50,"past_year_total_committers":2,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":25.0,"past_year_dds":0.4,"last_synced_at":"2026-04-26T15:00:41.710Z","last_synced_commit":"731aae3a3d1ebecfe7a82dfb18f0a96e22657a2f","created_at":"2025-04-11T10:44:44.949Z","updated_at":"2026-04-26T15:00:34.405Z","committers":[{"name":"Rui Ying (Mac)","email":"38958822+ruiying-ocean","login":"ruiying-ocean","count":503},{"name":"Rui Ying (UEA MAC)","email":"r.ying@uea.ac.uk","login":null,"count":31},{"name":"Rachel Wegener","email":"35503632+rwegener2","login":"rwegener2","count":2},{"name":"Kristen Thyng","email":"kthyng@gmail.com","login":"kthyng","count":1}],"past_year_committers":[{"name":"Rui Ying (UEA MAC)","email":"r.ying@uea.ac.uk","login":null,"count":30},{"name":"Rui Ying (Mac)","email":"38958822+ruiying-ocean","login":"ruiying-ocean","count":20}],"commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/ruiying-ocean%2Fcgeniepy/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2026-04-28T00:00:07.369Z","repositories_count":6221076,"commits_count":900092367,"contributors_count":34897309,"owners_count":1146655,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"ruiying-ocean/cgeniepy","html_url":"https://github.com/ruiying-ocean/cgeniepy","last_synced_at":"2026-03-28T03:01:03.244Z","status":"error","issues_count":24,"pull_requests_count":6,"avg_time_to_close_issue":795334.4,"avg_time_to_close_pull_request":17426.2,"issues_closed_count":15,"pull_requests_closed_count":5,"pull_request_authors_count":3,"issue_authors_count":2,"avg_comments_per_issue":0.5833333333333334,"avg_comments_per_pull_request":0.16666666666666666,"merged_pull_requests_count":5,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":13,"past_year_pull_requests_count":2,"past_year_avg_time_to_close_issue":75690.83333333333,"past_year_avg_time_to_close_pull_request":39.0,"past_year_issues_closed_count":6,"past_year_pull_requests_closed_count":2,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":1,"past_year_avg_comments_per_issue":0.15384615384615385,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":2,"created_at":"2025-04-11T10:44:45.591Z","updated_at":"2026-03-28T03:01:03.244Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/ruiying-ocean%2Fcgeniepy","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/ruiying-ocean%2Fcgeniepy/issues","issue_labels_count":{"enhancement":9,"bug":1},"pull_request_labels_count":{},"issue_author_associations_count":{"OWNER":21,"NONE":3},"pull_request_author_associations_count":{"OWNER":2,"NONE":2,"CONTRIBUTOR":2},"issue_authors":{"ruiying-ocean":21,"koldunovn":3},"pull_request_authors":{"rwegener2":2,"kthyng":2,"ruiying-ocean":2},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2026-04-26T00:00:11.126Z","repositories_count":14417205,"issues_count":34459305,"pull_requests_count":112753746,"authors_count":11246142,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{"enhancement":2},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"OWNER":7},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{"ruiying-ocean":7},"past_year_pull_request_authors":{},"maintainers":[{"login":"ruiying-ocean","count":23,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/ruiying-ocean"}],"active_maintainers":[{"login":"ruiying-ocean","count":7,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/ruiying-ocean"}]},"events":{"total":{"DeleteEvent":1,"PullRequestEvent":1,"IssuesEvent":18,"WatchEvent":2,"IssueCommentEvent":6,"PushEvent":65,"CreateEvent":9},"last_year":{"IssuesEvent":5,"WatchEvent":1,"IssueCommentEvent":1,"PushEvent":18,"CreateEvent":1}},"keywords":["cgenie","earth-sciences","earth-system-model","oceanography","python","visualisation"],"dependencies":[{"ecosystem":"pypi","filepath":"pyproject.toml","sha":null,"kind":"manifest","created_at":"2023-10-16T13:12:07.049Z","updated_at":"2023-10-16T13:12:07.049Z","repository_link":"https://github.com/ruiying-ocean/cgeniepy/blob/master/pyproject.toml","dependencies":[]},{"ecosystem":"actions","filepath":".github/workflows/draft-pdf.yml","sha":null,"kind":"manifest","created_at":"2026-02-13T05:31:12.233Z","updated_at":"2026-02-13T05:31:12.233Z","repository_link":"https://github.com/ruiying-ocean/cgeniepy/blob/master/.github/workflows/draft-pdf.yml","dependencies":[{"id":25817242324,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":25817242325,"package_name":"openjournals/openjournals-draft-action","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false},{"id":25817242336,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"pypi","filepath":"docs/requirements.txt","sha":null,"kind":"manifest","created_at":"2026-02-13T05:31:12.501Z","updated_at":"2026-02-13T05:31:12.501Z","repository_link":"https://github.com/ruiying-ocean/cgeniepy/blob/master/docs/requirements.txt","dependencies":[{"id":25817242337,"package_name":"cgeniepy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"uv.lock","sha":null,"kind":"lockfile","created_at":"2026-02-13T05:31:12.738Z","updated_at":"2026-02-13T05:31:12.738Z","repository_link":"https://github.com/ruiying-ocean/cgeniepy/blob/master/uv.lock","dependencies":[{"id":25817242339,"package_name":"accessible-pygments","ecosystem":"pypi","requirements":"0.0.5","direct":false,"kind":"runtime","optional":false},{"id":25817242344,"package_name":"affine","ecosystem":"pypi","requirements":"2.4.0","direct":false,"kind":"runtime","optional":false},{"id":25817242354,"package_name":"aiohappyeyeballs","ecosystem":"pypi","requirements":"2.6.1","direct":false,"kind":"runtime","optional":false},{"id":25817242355,"package_name":"aiohttp","ecosystem":"pypi","requirements":"3.12.15","direct":false,"kind":"runtime","optional":false},{"id":25817242356,"package_name":"aiosignal","ecosystem":"pypi","requirements":"1.4.0","direct":false,"kind":"runtime","optional":false},{"id":25817242357,"package_name":"alabaster","ecosystem":"pypi","requirements":"1.0.0","direct":false,"kind":"runtime","optional":false},{"id":25817242431,"package_name":"appnope","ecosystem":"pypi","requirements":"0.1.4","direct":false,"kind":"runtime","optional":false},{"id":25817242435,"package_name":"astroid","ecosystem":"pypi","requirements":"3.3.11","direct":false,"kind":"runtime","optional":false},{"id":25817242453,"package_name":"asttokens","ecosystem":"pypi","requirements":"3.0.0","direct":false,"kind":"runtime","optional":false},{"id":25817242456,"package_name":"async-timeout","ecosystem":"pypi","requirements":"5.0.1","direct":false,"kind":"runtime","optional":false},{"id":25817242507,"package_name":"attrs","ecosystem":"pypi","requirements":"25.3.0","direct":false,"kind":"runtime","optional":false},{"id":25817242508,"package_name":"autoapi","ecosystem":"pypi","requirements":"2.0.1","direct":false,"kind":"runtime","optional":false},{"id":25817242509,"package_name":"babel","ecosystem":"pypi","requirements":"2.17.0","direct":false,"kind":"runtime","optional":false},{"id":25817242513,"package_name":"beautifulsoup4","ecosystem":"pypi","requirements":"4.13.4","direct":false,"kind":"runtime","optional":false},{"id":25817242514,"package_name":"cartopy","ecosystem":"pypi","requirements":"0.25.0","direct":false,"kind":"runtime","optional":false},{"id":25817242555,"package_name":"certifi","ecosystem":"pypi","requirements":"2025.8.3","direct":false,"kind":"runtime","optional":false},{"id":25817242556,"package_name":"cffi","ecosystem":"pypi","requirements":"1.17.1","direct":false,"kind":"runtime","optional":false},{"id":25817242557,"package_name":"cftime","ecosystem":"pypi","requirements":"1.6.4.post1","direct":false,"kind":"runtime","optional":false},{"id":25817242561,"package_name":"cgeniepy","ecosystem":"pypi","requirements":"0.15.0","direct":false,"kind":"runtime","optional":false},{"id":25817242562,"package_name":"charset-normalizer","ecosystem":"pypi","requirements":"3.4.3","direct":false,"kind":"runtime","optional":false},{"id":25817242564,"package_name":"click","ecosystem":"pypi","requirements":"8.2.1","direct":false,"kind":"runtime","optional":false},{"id":25817242565,"package_name":"click-plugins","ecosystem":"pypi","requirements":"1.1.1.2","direct":false,"kind":"runtime","optional":false},{"id":25817242594,"package_name":"cligj","ecosystem":"pypi","requirements":"0.7.2","direct":false,"kind":"runtime","optional":false},{"id":25817242719,"package_name":"colorama","ecosystem":"pypi","requirements":"0.4.6","direct":false,"kind":"runtime","optional":false},{"id":25817242720,"package_name":"comm","ecosystem":"pypi","requirements":"0.2.3","direct":false,"kind":"runtime","optional":false},{"id":25817242736,"package_name":"contourpy","ecosystem":"pypi","requirements":"1.3.2","direct":false,"kind":"runtime","optional":false},{"id":25817242744,"package_name":"contourpy","ecosystem":"pypi","requirements":"1.3.3","direct":false,"kind":"runtime","optional":false},{"id":25817242745,"package_name":"cycler","ecosystem":"pypi","requirements":"0.12.1","direct":false,"kind":"runtime","optional":false},{"id":25817242770,"package_name":"debugpy","ecosystem":"pypi","requirements":"1.8.16","direct":false,"kind":"runtime","optional":false},{"id":25817242771,"package_name":"decorator","ecosystem":"pypi","requirements":"5.2.1","direct":false,"kind":"runtime","optional":false},{"id":25817242777,"package_name":"docutils","ecosystem":"pypi","requirements":"0.21.2","direct":false,"kind":"runtime","optional":false},{"id":25817242794,"package_name":"exceptiongroup","ecosystem":"pypi","requirements":"1.3.0","direct":false,"kind":"runtime","optional":false},{"id":25817242795,"package_name":"executing","ecosystem":"pypi","requirements":"2.2.0","direct":false,"kind":"runtime","optional":false},{"id":25817242796,"package_name":"fonttools","ecosystem":"pypi","requirements":"4.59.1","direct":false,"kind":"runtime","optional":false},{"id":25817242903,"package_name":"frozenlist","ecosystem":"pypi","requirements":"1.7.0","direct":false,"kind":"runtime","optional":false},{"id":25817242908,"package_name":"geopandas","ecosystem":"pypi","requirements":"1.1.1","direct":false,"kind":"runtime","optional":false},{"id":25817242909,"package_name":"gwspy","ecosystem":"pypi","requirements":"0.1.2","direct":false,"kind":"runtime","optional":false},{"id":25817242916,"package_name":"idna","ecosystem":"pypi","requirements":"3.10","direct":false,"kind":"runtime","optional":false},{"id":25817242917,"package_name":"imagesize","ecosystem":"pypi","requirements":"1.4.1","direct":false,"kind":"runtime","optional":false},{"id":25817242968,"package_name":"iniconfig","ecosystem":"pypi","requirements":"2.1.0","direct":false,"kind":"runtime","optional":false},{"id":25817242969,"package_name":"ipykernel","ecosystem":"pypi","requirements":"6.30.1","direct":false,"kind":"runtime","optional":false},{"id":25817242970,"package_name":"ipython","ecosystem":"pypi","requirements":"8.37.0","direct":false,"kind":"runtime","optional":false},{"id":25817242974,"package_name":"ipython","ecosystem":"pypi","requirements":"9.4.0","direct":false,"kind":"runtime","optional":false},{"id":25817242975,"package_name":"ipython-pygments-lexers","ecosystem":"pypi","requirements":"1.1.1","direct":false,"kind":"runtime","optional":false},{"id":25817242986,"package_name":"jedi","ecosystem":"pypi","requirements":"0.19.2","direct":false,"kind":"runtime","optional":false},{"id":25817242991,"package_name":"jinja2","ecosystem":"pypi","requirements":"3.1.6","direct":false,"kind":"runtime","optional":false},{"id":25817242992,"package_name":"jupyter-client","ecosystem":"pypi","requirements":"8.6.3","direct":false,"kind":"runtime","optional":false},{"id":25817242993,"package_name":"jupyter-core","ecosystem":"pypi","requirements":"5.8.1","direct":false,"kind":"runtime","optional":false},{"id":25817243005,"package_name":"kiwisolver","ecosystem":"pypi","requirements":"1.4.9","direct":false,"kind":"runtime","optional":false},{"id":25817243006,"package_name":"lxml","ecosystem":"pypi","requirements":"6.0.0","direct":false,"kind":"runtime","optional":false},{"id":25817243007,"package_name":"markupsafe","ecosystem":"pypi","requirements":"3.0.2","direct":false,"kind":"runtime","optional":false},{"id":25817243008,"package_name":"matplotlib","ecosystem":"pypi","requirements":"3.10.5","direct":false,"kind":"runtime","optional":false},{"id":25817243042,"package_name":"matplotlib-inline","ecosystem":"pypi","requirements":"0.1.7","direct":false,"kind":"runtime","optional":false},{"id":25817243061,"package_name":"multidict","ecosystem":"pypi","requirements":"6.6.4","direct":false,"kind":"runtime","optional":false},{"id":25817243108,"package_name":"nest-asyncio","ecosystem":"pypi","requirements":"1.6.0","direct":false,"kind":"runtime","optional":false},{"id":25817243110,"package_name":"netcdf4","ecosystem":"pypi","requirements":"1.7.2","direct":false,"kind":"runtime","optional":false},{"id":25817243112,"package_name":"numpy","ecosystem":"pypi","requirements":"2.2.6","direct":false,"kind":"runtime","optional":false},{"id":25817243113,"package_name":"numpy","ecosystem":"pypi","requirements":"2.3.2","direct":false,"kind":"runtime","optional":false},{"id":25817243114,"package_name":"packaging","ecosystem":"pypi","requirements":"25.0","direct":false,"kind":"runtime","optional":false},{"id":25817243115,"package_name":"pandas","ecosystem":"pypi","requirements":"2.3.2","direct":false,"kind":"runtime","optional":false},{"id":25817243116,"package_name":"pangaeapy","ecosystem":"pypi","requirements":"1.1.0","direct":false,"kind":"runtime","optional":false},{"id":25817243117,"package_name":"parso","ecosystem":"pypi","requirements":"0.8.5","direct":false,"kind":"runtime","optional":false},{"id":25817243118,"package_name":"pexpect","ecosystem":"pypi","requirements":"4.9.0","direct":false,"kind":"runtime","optional":false},{"id":25817243233,"package_name":"pillow","ecosystem":"pypi","requirements":"11.3.0","direct":false,"kind":"runtime","optional":false},{"id":25817243234,"package_name":"platformdirs","ecosystem":"pypi","requirements":"4.3.8","direct":false,"kind":"runtime","optional":false},{"id":25817243235,"package_name":"pluggy","ecosystem":"pypi","requirements":"1.6.0","direct":false,"kind":"runtime","optional":false},{"id":25817243236,"package_name":"pooch","ecosystem":"pypi","requirements":"1.8.2","direct":false,"kind":"runtime","optional":false},{"id":25817243310,"package_name":"prompt-toolkit","ecosystem":"pypi","requirements":"3.0.51","direct":false,"kind":"runtime","optional":false},{"id":25817243311,"package_name":"propcache","ecosystem":"pypi","requirements":"0.3.2","direct":false,"kind":"runtime","optional":false},{"id":25817243312,"package_name":"psutil","ecosystem":"pypi","requirements":"7.0.0","direct":false,"kind":"runtime","optional":false},{"id":25817243313,"package_name":"ptyprocess","ecosystem":"pypi","requirements":"0.7.0","direct":false,"kind":"runtime","optional":false},{"id":25817243317,"package_name":"pure-eval","ecosystem":"pypi","requirements":"0.2.3","direct":false,"kind":"runtime","optional":false},{"id":25817243318,"package_name":"pycparser","ecosystem":"pypi","requirements":"2.22","direct":false,"kind":"runtime","optional":false},{"id":25817243319,"package_name":"pydata-sphinx-theme","ecosystem":"pypi","requirements":"0.16.1","direct":false,"kind":"runtime","optional":false},{"id":25817243347,"package_name":"pygments","ecosystem":"pypi","requirements":"2.19.2","direct":false,"kind":"runtime","optional":false},{"id":25817243348,"package_name":"pyogrio","ecosystem":"pypi","requirements":"0.11.1","direct":false,"kind":"runtime","optional":false},{"id":25817243349,"package_name":"pyparsing","ecosystem":"pypi","requirements":"3.2.3","direct":false,"kind":"runtime","optional":false},{"id":25817243369,"package_name":"pyproj","ecosystem":"pypi","requirements":"3.7.1","direct":false,"kind":"runtime","optional":false},{"id":25817243372,"package_name":"pyproj","ecosystem":"pypi","requirements":"3.7.2","direct":false,"kind":"runtime","optional":false},{"id":25817243373,"package_name":"pyshp","ecosystem":"pypi","requirements":"2.3.1","direct":false,"kind":"runtime","optional":false},{"id":25817243397,"package_name":"pytest","ecosystem":"pypi","requirements":"8.4.1","direct":false,"kind":"runtime","optional":false},{"id":25817243398,"package_name":"python-dateutil","ecosystem":"pypi","requirements":"2.9.0.post0","direct":false,"kind":"runtime","optional":false},{"id":25817243417,"package_name":"python-dotenv","ecosystem":"pypi","requirements":"1.1.1","direct":false,"kind":"runtime","optional":false},{"id":25817243419,"package_name":"pytz","ecosystem":"pypi","requirements":"2025.2","direct":false,"kind":"runtime","optional":false},{"id":25817243427,"package_name":"pywin32","ecosystem":"pypi","requirements":"311","direct":false,"kind":"runtime","optional":false},{"id":25817243428,"package_name":"pyyaml","ecosystem":"pypi","requirements":"6.0.2","direct":false,"kind":"runtime","optional":false},{"id":25817243429,"package_name":"pyzmq","ecosystem":"pypi","requirements":"27.0.2","direct":false,"kind":"runtime","optional":false},{"id":25817243430,"package_name":"rasterio","ecosystem":"pypi","requirements":"1.4.3","direct":false,"kind":"runtime","optional":false},{"id":25817243441,"package_name":"regionmask","ecosystem":"pypi","requirements":"0.13.0","direct":false,"kind":"runtime","optional":false},{"id":25817243452,"package_name":"requests","ecosystem":"pypi","requirements":"2.32.5","direct":false,"kind":"runtime","optional":false},{"id":25817243453,"package_name":"roman-numerals-py","ecosystem":"pypi","requirements":"3.1.0","direct":false,"kind":"runtime","optional":false},{"id":25817243454,"package_name":"scipy","ecosystem":"pypi","requirements":"1.15.3","direct":false,"kind":"runtime","optional":false},{"id":25817243455,"package_name":"scipy","ecosystem":"pypi","requirements":"1.16.1","direct":false,"kind":"runtime","optional":false},{"id":25817243456,"package_name":"shapely","ecosystem":"pypi","requirements":"2.1.1","direct":false,"kind":"runtime","optional":false},{"id":25817243479,"package_name":"six","ecosystem":"pypi","requirements":"1.17.0","direct":false,"kind":"runtime","optional":false},{"id":25817243480,"package_name":"snowballstemmer","ecosystem":"pypi","requirements":"3.0.1","direct":false,"kind":"runtime","optional":false},{"id":25817243482,"package_name":"soupsieve","ecosystem":"pypi","requirements":"2.7","direct":false,"kind":"runtime","optional":false},{"id":25817243484,"package_name":"sphinx","ecosystem":"pypi","requirements":"8.1.3","direct":false,"kind":"runtime","optional":false},{"id":25817243485,"package_name":"sphinx","ecosystem":"pypi","requirements":"8.2.3","direct":false,"kind":"runtime","optional":false},{"id":25817243486,"package_name":"sphinx-autoapi","ecosystem":"pypi","requirements":"3.6.0","direct":false,"kind":"runtime","optional":false},{"id":25817243501,"package_name":"sphinx-design","ecosystem":"pypi","requirements":"0.6.1","direct":false,"kind":"runtime","optional":false},{"id":25817243505,"package_name":"sphinx-gallery","ecosystem":"pypi","requirements":"0.19.0","direct":false,"kind":"runtime","optional":false},{"id":25817243506,"package_name":"sphinxcontrib-applehelp","ecosystem":"pypi","requirements":"2.0.0","direct":false,"kind":"runtime","optional":false},{"id":25817243510,"package_name":"sphinxcontrib-devhelp","ecosystem":"pypi","requirements":"2.0.0","direct":false,"kind":"runtime","optional":false},{"id":25817243539,"package_name":"sphinxcontrib-htmlhelp","ecosystem":"pypi","requirements":"2.1.0","direct":false,"kind":"runtime","optional":false},{"id":25817243540,"package_name":"sphinxcontrib-jsmath","ecosystem":"pypi","requirements":"1.0.1","direct":false,"kind":"runtime","optional":false},{"id":25817243541,"package_name":"sphinxcontrib-qthelp","ecosystem":"pypi","requirements":"2.0.0","direct":false,"kind":"runtime","optional":false},{"id":25817243574,"package_name":"sphinxcontrib-serializinghtml","ecosystem":"pypi","requirements":"2.0.0","direct":false,"kind":"runtime","optional":false},{"id":25817243577,"package_name":"stack-data","ecosystem":"pypi","requirements":"0.6.3","direct":false,"kind":"runtime","optional":false},{"id":25817243586,"package_name":"tomli","ecosystem":"pypi","requirements":"2.2.1","direct":false,"kind":"runtime","optional":false},{"id":25817243587,"package_name":"tornado","ecosystem":"pypi","requirements":"6.5.2","direct":false,"kind":"runtime","optional":false},{"id":25817243619,"package_name":"traitlets","ecosystem":"pypi","requirements":"5.14.3","direct":false,"kind":"runtime","optional":false},{"id":25817243627,"package_name":"typing-extensions","ecosystem":"pypi","requirements":"4.14.1","direct":false,"kind":"runtime","optional":false},{"id":25817243628,"package_name":"tzdata","ecosystem":"pypi","requirements":"2025.2","direct":false,"kind":"runtime","optional":false},{"id":25817243629,"package_name":"urllib3","ecosystem":"pypi","requirements":"2.5.0","direct":false,"kind":"runtime","optional":false},{"id":25817243630,"package_name":"wcwidth","ecosystem":"pypi","requirements":"0.2.13","direct":false,"kind":"runtime","optional":false},{"id":25817243646,"package_name":"xarray","ecosystem":"pypi","requirements":"2025.6.1","direct":false,"kind":"runtime","optional":false},{"id":25817243660,"package_name":"xarray","ecosystem":"pypi","requirements":"2025.8.0","direct":false,"kind":"runtime","optional":false},{"id":25817243661,"package_name":"yarl","ecosystem":"pypi","requirements":"1.20.1","direct":false,"kind":"runtime","optional":false}]}],"score":3.951243718581427,"created_at":"2025-10-26T17:05:18.192Z","updated_at":"2026-04-28T16:00:50.720Z","avatar_url":"https://github.com/ruiying-ocean.png","language":"ReScript","category":"Climate Change","sub_category":"Climate Data Processing and Analysis","monthly_downloads":0,"total_dependent_repos":0,"total_dependent_packages":0,"readme":"\u003cp align=\"center\"\u003e\n  \u003cimg src=\"logo.png\"/\u003e\n\u003c/p\u003e\n\n[![Documentation Status](https://readthedocs.org/projects/cgeniepy/badge/?version=latest)](https://cgeniepy.readthedocs.io/en/latest/?badge=latest)\n[![PyPI version](https://badge.fury.io/py/cgeniepy.svg)](https://badge.fury.io/py/cgeniepy)\n![PyPI - Downloads](https://img.shields.io/pypi/dm/cgeniepy)\n[![DOI](https://joss.theoj.org/papers/10.21105/joss.06762/status.svg)](https://doi.org/10.21105/joss.06762)\n[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.13799838.svg)](https://doi.org/10.5281/zenodo.13799838)\n[![License: GPL v3](https://img.shields.io/badge/License-GPL%20v3-blue.svg)](https://www.gnu.org/licenses/gpl-3.0)\n\n`cgeniepy` is a Python package to analyse the output of [cGENIE Earth System Model](https://www.seao2.info/mymuffin.html). It aims to provide a set of convenient tools for the post-simulation work, including analysing the model output, plotting publication-quality figures, and conducting model-data comparison.\n\n\n## Installation\n\n1. Install from [PyPI](https://pypi.org/project/cgeniepy/) by running commands below in your terminal.\n\n```bash\npython3 -m pip install cgeniepy\n```\n\n2. Install from GitHub:\n\n```bash\npython3 -m pip install git+https://github.com/ruiying-ocean/cgeniepy.git@master\n```\n\n3. Install extra dependency\n```bash\npython3 -m pip install \"cgeniepy[extra]\"\n```\n\n4. Install using uv\n```bash\nuv add cgeniepy\n```\n\n5. Update package\n```bash\npip install --upgrade cgeniepy\n```\n\n\n## Quickstart\nI have uploaded a sample model run, which is a [preindustrial spinup configuration](https://doi.org/10.5194/gmd-17-1729-2024) with marine ecosystem and biogeochemistry enabled (C, P, Fe, Si, O). \n\n```python\nimport cgeniepy\nfrom cgeniepy.model import GenieModel\n\nmodel = cgeniepy.sample_model()\n## for your own model experiment\nmodel = GenieModel(\"directory_to_your_model_output\")\n\n## select variable -\u003e select coordinate -\u003e operation like mean or plot\nmodel.get_var('ocn_sur_temp').isel(time=-1).plot(colorbar=True)\n```\n\n* If you want to try other cGENIE model runs, you may go to this zenodo record (https://zenodo.org/records/10575295). \n* If you want to try non-cGENIE model, I have also uploaded two example files to here (https://zenodo.org/records/13786014). \n\n\n## Documentation\n\n[An online documentation is hosted in readthedoc.](https://cgeniepy.readthedocs.io/en/latest/)\n\n\n\n## Citation\n\nYing, R. (2024). cgeniepy: A Python package for analysing cGENIE Earth System Model output. Journal of Open Source Software, 9(101), 6762. https://doi.org/10.21105/joss.06762\n\n## Logo\n\nLogo is designed by me using free **righteous** font.\n\n## Alternative\n* Prof. Andy Ridgwell's [muffinplot](https://github.com/derpycode/muffinplot)\n* Dr. Alex Phol's [genie_basicdiags](https://github.com/alexpohl/genie_basicdiags/)\n\n## Raise a bug\n\nPlease use GitHub's Issues to raise a bug. This makes the issues traceable so that future users having the same problem can find the answer in the public domain.\n\n## Contributing\n\n[How to contribute](CONTRIBUTING.md)\n","funding_links":[],"readme_doi_urls":["https://doi.org/10.21105/joss.06762","https://doi.org/10.5281/zenodo.13799838","https://doi.org/10.5194/gmd-17-1729-2024"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://ost.ecosyste.ms/api/v1/projects/328122","html_url":"https://ost.ecosyste.ms/projects/328122"}