{"id":327944,"name":"Taxonomy Resolver: A Python package for building and filtering taxonomy trees","description":"Taxonomy Resolver: A Python package for building and filtering taxonomy trees - Published in JOSS (2025)","url":"https://github.com/ebi-jdispatcher/taxonomy-resolver","last_synced_at":"2025-10-26T17:14:37.404Z","repository":{"id":134761384,"uuid":"271287921","full_name":"ebi-jdispatcher/taxonomy-resolver","owner":"ebi-jdispatcher","description":"Builds lists of Taxonomy Identifiers based on the NCBI Taxonomy Database","archived":false,"fork":false,"pushed_at":"2025-06-24T11:01:19.000Z","size":113804,"stargazers_count":3,"open_issues_count":0,"forks_count":3,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-10-25T23:34:21.133Z","etag":null,"topics":["bioinformatics","bioinformatics-tool","taxonomy"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"apache-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/ebi-jdispatcher.png","metadata":{"files":{"readme":"README.rst","changelog":"CHANGELOG.rst","contributing":"CONTRIBUTING.rst","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2020-06-10T13:42:10.000Z","updated_at":"2025-06-24T11:01:23.000Z","dependencies_parsed_at":"2024-12-18T18:21:32.839Z","dependency_job_id":"3d21cfc9-8950-4604-8de2-791057bb047e","html_url":"https://github.com/ebi-jdispatcher/taxonomy-resolver","commit_stats":null,"previous_names":[],"tags_count":14,"template":false,"template_full_name":null,"purl":"pkg:github/ebi-jdispatcher/taxonomy-resolver","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ebi-jdispatcher%2Ftaxonomy-resolver","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ebi-jdispatcher%2Ftaxonomy-resolver/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ebi-jdispatcher%2Ftaxonomy-resolver/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ebi-jdispatcher%2Ftaxonomy-resolver/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ebi-jdispatcher","download_url":"https://codeload.github.com/ebi-jdispatcher/taxonomy-resolver/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ebi-jdispatcher%2Ftaxonomy-resolver/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":281139260,"owners_count":26450188,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-10-26T02:00:06.575Z","response_time":61,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"ebi-jdispatcher","name":"Job Dispatcher","uuid":"105044835","kind":"organization","description":"Bioinformatics sequence analysis and data retrieval services by the Job Dispatcher Team","email":null,"website":"https://www.ebi.ac.uk/Tools/jdispatcher","location":"United Kingdom","twitter":"ebi_jdispatcher","company":null,"icon_url":"https://avatars.githubusercontent.com/u/105044835?v=4","repositories_count":5,"last_synced_at":"2023-03-10T11:45:47.819Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/ebi-jdispatcher","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-20T11:11:46.418Z","updated_at":"2023-03-10T11:45:47.979Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ebi-jdispatcher","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ebi-jdispatcher/repositories"},"packages":[],"commits":{"id":9624584,"full_name":"ebi-jdispatcher/taxonomy-resolver","default_branch":"main","total_commits":238,"total_committers":4,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":59.5,"dds":0.012605042016806678,"past_year_total_commits":35,"past_year_total_committers":4,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":8.75,"past_year_dds":0.08571428571428574,"last_synced_at":"2025-10-25T01:49:38.761Z","last_synced_commit":"e014cd4ef80ad81e96c8a3e5018403bcfe5f4433","created_at":"2025-04-11T10:20:32.655Z","updated_at":"2025-10-25T01:49:27.077Z","committers":[{"name":"Fábio Madeira","email":"fbiomadeira@gmail.com","login":"biomadeira","count":235},{"name":"Thiago Britto Borges","email":"tbrittoborges","login":"tbrittoborges","count":1},{"name":"Juanjo Bazán","email":"jjbazan@gmail.com","login":"xuanxu","count":1},{"name":"Russell Neches","email":"russell@vort.org","login":null,"count":1}],"past_year_committers":[{"name":"Fábio Madeira","email":"fabiomadeira@me.com","login":"biomadeira","count":32},{"name":"Thiago Britto Borges","email":"tbrittoborges","login":"tbrittoborges","count":1},{"name":"Juanjo Bazán","email":"jjbazan@gmail.com","login":"xuanxu","count":1},{"name":"Russell Neches","email":"russell@vort.org","login":null,"count":1}],"commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/ebi-jdispatcher%2Ftaxonomy-resolver/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-10-25T00:00:16.883Z","repositories_count":6087797,"commits_count":922343674,"contributors_count":35992972,"owners_count":1109078,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"ebi-jdispatcher/taxonomy-resolver","html_url":"https://github.com/ebi-jdispatcher/taxonomy-resolver","last_synced_at":"2025-08-31T07:59:50.356Z","status":null,"issues_count":10,"pull_requests_count":20,"avg_time_to_close_issue":36667434.3,"avg_time_to_close_pull_request":26939.0,"issues_closed_count":10,"pull_requests_closed_count":20,"pull_request_authors_count":4,"issue_authors_count":4,"avg_comments_per_issue":0.8,"avg_comments_per_pull_request":0.2,"merged_pull_requests_count":20,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":5,"past_year_pull_requests_count":20,"past_year_avg_time_to_close_issue":1125617.0,"past_year_avg_time_to_close_pull_request":26939.0,"past_year_issues_closed_count":5,"past_year_pull_requests_closed_count":20,"past_year_pull_request_authors_count":4,"past_year_issue_authors_count":4,"past_year_avg_comments_per_issue":1.4,"past_year_avg_comments_per_pull_request":0.2,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":20,"created_at":"2025-04-11T10:20:38.050Z","updated_at":"2025-09-03T04:56:45.604Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/ebi-jdispatcher%2Ftaxonomy-resolver","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/ebi-jdispatcher%2Ftaxonomy-resolver/issues","issue_labels_count":{"enhancement":6},"pull_request_labels_count":{},"issue_author_associations_count":{"MEMBER":7,"NONE":2,"CONTRIBUTOR":1},"pull_request_author_associations_count":{"MEMBER":22,"NONE":4,"CONTRIBUTOR":2},"issue_authors":{"biomadeira":7,"rossbar":1,"tbrittoborges":1,"ryneches":1},"pull_request_authors":{"biomadeira":22,"xuanxu":2,"tbrittoborges":2,"ryneches":2},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-10-24T00:00:23.297Z","repositories_count":11160057,"issues_count":34768485,"pull_requests_count":112673255,"authors_count":11041224,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{"enhancement":3},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"MEMBER":2,"NONE":2,"CONTRIBUTOR":1},"past_year_pull_request_author_associations_count":{"MEMBER":12,"NONE":4,"CONTRIBUTOR":2},"past_year_issue_authors":{"biomadeira":2,"rossbar":1,"ryneches":1,"tbrittoborges":1},"past_year_pull_request_authors":{"biomadeira":12,"tbrittoborges":2,"xuanxu":2,"ryneches":2},"maintainers":[{"login":"biomadeira","count":29,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/biomadeira"}],"active_maintainers":[{"login":"biomadeira","count":14,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/biomadeira"}]},"events":{"total":{"CreateEvent":7,"ReleaseEvent":1,"IssuesEvent":8,"WatchEvent":5,"IssueCommentEvent":9,"PushEvent":23,"PullRequestEvent":17,"ForkEvent":3},"last_year":{"CreateEvent":7,"ReleaseEvent":1,"IssuesEvent":8,"WatchEvent":5,"IssueCommentEvent":9,"PushEvent":23,"PullRequestEvent":17,"ForkEvent":3}},"keywords":["bioinformatics","bioinformatics-tool","taxonomy"],"dependencies":[],"score":2.4849066497880004,"created_at":"2025-10-26T17:05:13.664Z","updated_at":"2025-10-26T17:14:37.458Z","avatar_url":"https://github.com/ebi-jdispatcher.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":0,"total_dependent_repos":0,"total_dependent_packages":0,"readme":null,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://ost.ecosyste.ms/api/v1/projects/327944","html_url":"https://ost.ecosyste.ms/projects/327944"}