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Wildlife","monthly_downloads":0,"total_dependent_repos":0,"total_dependent_packages":0,"readme":"---\noutput: github_document\n---\n\n\u003c!-- README.md is generated from README.Rmd. Please edit that file --\u003e\n\n```{r, include = FALSE}\nknitr::opts_chunk$set(\n  collapse = TRUE,\n  comment = \"#\u003e\",\n  fig.path = \"man/figures/README-\",\n  fig.width = 5,\n  fig.height = 4\n)\nlibrary(bboutools)\n```\n\n# bbousuite\n\n\u003c!-- badges: start --\u003e\n[![Lifecycle: experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://lifecycle.r-lib.org/articles/stages.html#experimental)\n[![R-CMD-check](https://github.com/poissonconsulting/bbousuite/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/poissonconsulting/bbousuite/actions/workflows/R-CMD-check.yaml)\n[![Codecov test coverage](https://codecov.io/gh/poissonconsulting/bbousuite/branch/main/graph/badge.svg)](https://app.codecov.io/gh/poissonconsulting/bbousuite?branch=main)\n\u003c!-- badges: end --\u003e\n\nThe goal of `bbousuite` is to make it easy to install and load the (`bbou`) suite of\nR packages for **B**oreal cari**BOU**.\n\nThe `bbou`suite is a set of R packages to facilitate simulation and analysis of boreal caribou survival and recruitment data to estimate population growth.  \n\nIt consists of:  \n\n- [`bboudata`](https://poissonconsulting.github.io/bboudata/), a collection of simulated and anonymized empirical survival and recruitment datasets.  \n- [`bboutools`](https://poissonconsulting.github.io/bboutools/), a set of functions to estimate population growth in a Bayesian or Maximum Likelihood (ML) framework, implemented under the hood using the [Nimble](https://r-nimble.org) R package.  \n- [`bboushiny`](https://poissonconsulting.github.io/bboushiny/), a Graphical User Interface (GUI) to `bboutools`.    \n- [`bbouretro`](https://poissonconsulting.github.io/bbouretro/), a set of functions to estimate population growth using traditional frequentist methods.  \n- [`bbousims`](https://poissonconsulting.github.io/bbousims/), a set of functions to simulate survival and recruitment data from hypothetical radio-collaring and composition surveys.  \n\nEach R package has a website with function documentation and a 'Get Started' guide.  \nIf you are completely new to the `bbou` suite, we recommend taking a look at the [bboutools 'Get Started' guide](https://poissonconsulting.github.io/bboutools/articles/bboutools.html) as this demonstrates core functionality and methods.\n\nThere are also several vignettes, including `bboutools` [analytical methods](https://poissonconsulting.github.io/bboutools/articles/methods.html) and [prior selection](https://poissonconsulting.github.io/bboutools/articles/priors.html), `bbouretro` [analytical methods](https://poissonconsulting.github.io/bbouretro/articles/retro-methods.html), using [`bbousims` with `bboutools`](https://poissonconsulting.github.io/bbousims/articles/bboutools.html), and comparison of Bayesian and traditional method estimates with [empirical](https://poissonconsulting.github.io/bbousuite/articles/empirical-comparisons.html) and [simulated](https://poissonconsulting.github.io/bbousuite/articles/simulations.html) data. \n\n\n## Installation\n\nYou can install the latest version of `bbousuite` from [GitHub](https://github.com/poissonconsulting/bbousuite) with:\n\n``` r\n# install.packages(\"remotes\")\nremotes::install_github(\"poissonconsulting/bbousuite\")\n```\n\n## Load\n\nTo load `bbousuite`\n\n```{r}\nlibrary(bbousuite)\n```\n\n### Packages\n\nThe packages installed and loaded by `bbousuite` suite are:\n\n- [bboudata](https://github.com/poissonconsulting/bboudata)\n- [bbouretro](https://github.com/poissonconsulting/bbouretro)\n- [bboutools](https://github.com/poissonconsulting/bboutools)\n- [bbousims](https://github.com/poissonconsulting/bbousims)\n- [bboushiny](https://github.com/poissonconsulting/bboushiny)\n\n## Inspiration\n\n`bbousuite` was inspired by the [`tidyverse`](https://github.com/tidyverse/tidyverse) package.\n\n## Getting Help or Reporting an Issue\n\nTo report bugs/issues/feature requests, please file an [issue](https://github.com/poissonconsulting/bbousuite/issues/).\n\n## How to Contribute\n\nIf you would like to contribute to the package, please see our \n[CONTRIBUTING](https://github.com/poissonconsulting/bbousuite/blob/master/.github/CONTRIBUTING.md) guidelines.\n\n## Code of Conduct\n\nPlease note that the bbou project is released with a [Contributor Code of Conduct](https://contributor-covenant.org/version/2/1/CODE_OF_CONDUCT.html). 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