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Change","sub_category":"Climate Data Standards","monthly_downloads":257425,"total_dependent_repos":0,"total_dependent_packages":0,"readme":"# Icechunk\n\n![Icechunk logo](https://raw.githubusercontent.com/earth-mover/icechunk/refs/heads/main/icechunk-python/docs/docs/assets/logo.svg)\n\n\u003ca href=\"https://pypi.org/project/icechunk\" target=\"_blank\"\u003e\u003cimg alt=\"PyPI\" src=\"https://img.shields.io/pypi/v/icechunk?logo=pypi\u0026logoColor=ffde57\u0026label=pypi\u0026style=for-the-badge\"\u003e\u003c/a\u003e\n\u003ca href=\"https://anaconda.org/conda-forge/icechunk\" target=\"_blank\"\u003e\u003cimg alt=\"Conda Forge\" src=\"https://img.shields.io/conda/vn/conda-forge/icechunk.svg?logo=conda-forge\u0026style=for-the-badge\"\u003e\u003c/a\u003e\n\u003ca href=\"https://crates.io/crates/icechunk\" target=\"_blank\"\u003e\u003cimg alt=\"Crates.io\" src=\"https://img.shields.io/crates/v/icechunk?logo=rust\u0026label=crates.io\u0026link=https%3A%2F%2Fcrates.io%2Fcrates%2Ficechunk\u0026logoColor=CE422B\u0026style=for-the-badge\"\u003e\u003c/a\u003e\n\u003ca href=\"https://github.com/earth-mover/icechunk\" target=\"_blank\"\u003e\u003cimg alt=\"GitHub Repo stars\" src=\"https://img.shields.io/github/stars/earth-mover/icechunk?style=for-the-badge\u0026logo=github\"\u003e\u003c/a\u003e\n\u003ca href=\"https://join.slack.com/t/earthmover-community/shared_invite/zt-2cwje92ir-xU3CfdG8BI~4CJOJy~sceQ\" target=\"_blank\"\u003e\u003cimg alt=\"Earthmover Community Slack\" src=\"https://img.shields.io/badge/Slack-4A154B?style=for-the-badge\u0026logo=slack\u0026logoColor=white\" /\u003e\u003c/a\u003e\n\n---\n\u003e [!TIP]\n\u003e **Icechunk 2.0 is released!** Better consistency, performance, and reliability for tensor storage\n---\n\nIcechunk is an open-source (Apache 2.0), transactional storage engine for tensor / ND-array data designed for use on cloud object storage.\nIcechunk works together with **[Zarr](https://zarr.dev/)**, augmenting the Zarr core data model with features\nthat enhance performance, collaboration, and safety in a cloud-computing context.\n\n## Documentation and Resources\n\n- This page: a general overview of the project's goals and components.\n- [Icechunk Launch Blog Post](https://earthmover.io/blog/icechunk)\n- [Frequently Asked Questions](https://icechunk.io/en/latest/faq/)\n- Documentation for [Icechunk Python](https://icechunk.io/en/latest/), the main user-facing\n  library\n- Documentation for the [Icechunk Rust Crate](https://icechunk.io/en/latest/icechunk-rust)\n- The [Contributor Guide](https://icechunk.io/en/latest/contributing)\n- The [Icechunk Spec](https://icechunk.io/en/latest/spec)\n\n## Crate Structure\n\nThe Rust workspace is organized into layered crates:\n\n```mermaid\ngraph TD\n    python[icechunk-python] --\u003e core[icechunk]\n    core --\u003e arrow[icechunk-arrow-object-store]\n    core --\u003e s3[icechunk-s3 *optional*]\n    core --\u003e storage[icechunk-storage]\n    core --\u003e format[icechunk-format]\n    arrow --\u003e storage\n    s3 --\u003e storage\n    storage --\u003e types[icechunk-types]\n    format --\u003e types\n```\n\n| Crate | Description |\n|-------|-------------|\n| **icechunk-macros** | Procedural macro helpers for tests and internal use |\n| **icechunk-types** | Shared foundational types (`Path`, `ETag`, `Move`, error wrappers) used across all crates |\n| **icechunk-format** | Binary format types and serialization (snapshots, manifests, transaction logs, repo info) |\n| **icechunk-storage** | Storage trait definitions and common storage utilities |\n| **icechunk-arrow-object-store** | Storage backend using Apache Arrow's `object_store` (in-memory, local, GCS, Azure, etc.) |\n| **icechunk-s3** | Native AWS S3 storage backend (optional feature) |\n| **icechunk** | Core storage engine: transactions, version control, repositories |\n| **icechunk-python** | PyO3 bindings exposing the engine to Python |\n\n## Icechunk Overview\n\nLet's break down what \"transactional storage engine for Zarr\" actually means:\n\n- **[Zarr](https://zarr.dev/)** is an open source specification for the storage of multidimensional array (a.k.a. tensor) data.\n  Zarr defines the metadata for describing arrays (shape, dtype, etc.) and the way these arrays are chunked, compressed, and converted to raw bytes for storage. Zarr can store its data in any key-value store.\n  There are many different implementations of Zarr in different languages. _Right now, Icechunk only supports\n  [Zarr Python](https://zarr.readthedocs.io/en/stable/)._\n  If you're interested in implementing Icechunk support, please [open an issue](https://github.com/earth-mover/icechunk/issues) so we can help you.\n- **Storage engine** - Icechunk exposes a key-value interface to Zarr and manages all of the actual I/O for getting, setting, and updating both metadata and chunk data in cloud object storage.\n  Zarr libraries don't have to know exactly how icechunk works under the hood in order to use it.\n- **Transactional** - The key improvement that Icechunk brings on top of regular Zarr is to provide consistent serializable isolation between transactions.\n  This means that Icechunk data is safe to read and write in parallel from multiple uncoordinated processes.\n  This allows Zarr to be used more like a database.\n\nThe core entity in Icechunk is a repository or **repo**.\nA repo is defined as a Zarr hierarchy containing one or more Arrays and Groups, and a repo functions as a\nself-contained _Zarr Store_.\nThe most common scenario is for an Icechunk repo to contain a single Zarr group with multiple arrays, each corresponding to different physical variables but sharing common spatiotemporal coordinates.\nHowever, formally a repo can be any valid Zarr hierarchy, from a single Array to a deeply nested structure of Groups and Arrays.\nUsers of Icechunk should aim to scope their repos only to related arrays and groups that require consistent transactional updates.\n\nIcechunk supports the following core requirements:\n\n1. **Object storage** - the format is designed around the consistency features and performance characteristics available in modern cloud object storage. No external database or catalog is required to maintain a repo.\n(It also works with file storage.)\n1. **Serializable isolation** - Reads are isolated from concurrent writes and always use a committed snapshot of a repo. Writes are committed atomically and are never partially visible. No locks are required for reading.\n1. **Time travel** - Previous snapshots of a repo remain accessible after new ones have been written.\n1. **Data version control** - Repos support both _tags_ (immutable references to snapshots) and _branches_ (mutable references to snapshots).\n1. **Chunk shardings** - Chunk storage is decoupled from specific file names. Multiple chunks can be packed into a single object (sharding).\n1. **Chunk references** - Zarr-compatible chunks within other file formats (e.g. HDF5, NetCDF) can be referenced.\n1. **Schema evolution** - Arrays and Groups can be added, renamed, and removed from the hierarchy with minimal overhead.\n\n## Key Concepts\n\n### Groups, Arrays, and Chunks\n\nIcechunk is designed around the Zarr data model, widely used in scientific computing, data science, and AI / ML.\n(The Zarr high-level data model is effectively the same as HDF5.)\nThe core data structure in this data model is the **array**.\nArrays have two fundamental properties:\n\n- **shape** - a tuple of integers which specify the dimensions of each axis of the array. A 10 x 10 square array would have shape (10, 10)\n- **data type** - a specification of what type of data is found in each element, e.g. integer, float, etc. Different data types have different precision (e.g. 16-bit integer, 64-bit float, etc.)\n\nIn Zarr / Icechunk, arrays are split into **chunks**.\nA chunk is the minimum unit of data that must be read / written from storage, and thus choices about chunking have strong implications for performance.\nZarr leaves this completely up to the user.\nChunk shape should be chosen based on the anticipated data access pattern for each array.\nAn Icechunk array is not bounded by an individual file and is effectively unlimited in size.\n\nFor further organization of data, Icechunk supports **groups** within a single repo.\nGroup are like folders which contain multiple arrays and or other groups.\nGroups enable data to be organized into hierarchical trees.\nA common usage pattern is to store multiple arrays in a group representing a NetCDF-style dataset.\n\nArbitrary JSON-style key-value metadata can be attached to both arrays and groups.\n\n### Snapshots\n\nEvery update to an Icechunk store creates a new **snapshot** with a unique ID.\nIcechunk users must organize their updates into groups of related operations called **transactions**.\nFor example, appending a new time slice to multiple arrays should be done as a single transaction, comprising the following steps\n\n1. Update the array metadata to resize the array to accommodate the new elements.\n2. Write new chunks for each array in the group.\n\nWhile the transaction is in progress, none of these changes will be visible to other users of the store.\nOnce the transaction is committed, a new snapshot is generated.\nReaders can only see and use committed snapshots.\n\n### Branches and Tags\n\nAdditionally, snapshots occur in a specific linear (i.e. serializable) order within a **branch**.\nA branch is a mutable reference to a snapshot--a pointer that maps the branch name to a snapshot ID.\nThe default branch is `main`.\nEvery commit to the main branch updates this reference.\nIcechunk's design protects against the race condition in which two uncoordinated sessions attempt to update the branch at the same time; only one can succeed.\n\nIcechunk also defines **tags**--_immutable_ references to snapshot.\nTags are appropriate for publishing specific releases of a repository or for any application which requires a persistent, immutable identifier to the store state.\n\n### Chunk References\n\nChunk references are \"pointers\" to chunks that exist in other files--HDF5, NetCDF, GRIB, etc.\nIcechunk can store these references alongside native Zarr chunks as \"virtual datasets\".\nYou can then update these virtual datasets incrementally (overwrite chunks, change metadata, etc.) without touching the underling files.\n\n## How Does It Work?\n\n**!!! Note:**\n    For a more detailed explanation, have a look at the [Icechunk spec](./docs/docs/spec.md).\n\nZarr itself works by storing both metadata and chunk data into a abstract store according to a specified system of \"keys\".\nFor example, a 2D Zarr array called `myarray`, within a group called `mygroup`, would generate the following keys:\n\n```\nmygroup/zarr.json\nmygroup/myarray/zarr.json\nmygroup/myarray/c/0/0\nmygroup/myarray/c/0/1\n```\n\nIn standard regular Zarr stores, these key map directly to filenames in a filesystem or object keys in an object storage system.\nWhen writing data, a Zarr implementation will create these keys and populate them with data.\nWhen modifying existing arrays or groups, a Zarr implementation will potentially overwrite existing keys with new data.\n\nThis is generally not a problem, as long there is only one person or process coordinating access to the data.\nHowever, when multiple uncoordinated readers and writers attempt to access the same Zarr data at the same time, [various consistency problems](https://icechunk.io/en/latest/faq/#why-was-icechunk-created) emerge.\nThese consistency problems can occur in both file storage and object storage; they are particularly severe in a cloud setting where Zarr is being used as an active store for data that are frequently changed while also being read.\n\nWith Icechunk, we keep the same core Zarr data model, but add a layer of indirection between the Zarr keys and the on-disk storage.\nThe Icechunk library translates between the Zarr keys and the actual on-disk data given the particular context of the user's state.\nIcechunk defines a series of interconnected metadata and data files that together enable efficient isolated reading and writing of metadata and chunks.\nOnce written, these files are immutable.\nIcechunk keeps track of every single chunk explicitly in a \"chunk manifest\".\n\n```mermaid\nflowchart TD\n    zarr-python[Zarr Library] \u003c-- key / value--\u003e icechunk[Icechunk Library]\n    icechunk \u003c-- data / metadata files --\u003e storage[(Object Storage)]\n```\n","funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["compressed","ndimensional-arrays","pangeo","pydata","earth-observation","open-science","closember","gdal","cloud-computing","climate"],"project_url":"https://ost.ecosyste.ms/api/v1/projects/318287","html_url":"https://ost.ecosyste.ms/projects/318287"}