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Life and Fishery","monthly_downloads":0,"total_dependent_repos":0,"total_dependent_packages":0,"readme":"# frasyr\n[![Build status](https://github.com/ichimomo/frasyr/actions/workflows/check-standard.yaml/badge.svg)](https://github.com/ichimomo/frasyr/actions/workflows/check-standard.yaml)\n  [![Codecov test coverage](https://codecov.io/gh/ichimomo/frasyr/branch/dev/graph/badge.svg)](https://codecov.io/gh/ichimomo/frasyr?branch=dev)\n- Fisheries Research Agency (FRA) provides the method for calculating sustainable yield (SY) with R\n- VPAを用いた資源量推定と，その推定結果をもとにしてMSYを基礎とした目標管理基準値を計算するためのRのパッケージです．開発途中のものであること，ご承知おきください．\n\n# 使い方など\nhttps://ichimomo.github.io/main/ に一括した情報へのリンクがあります\n\n# インストール方法\n\n```\n# devtoolsをインストールしていない人はインストールする\ninstall.packages(\"devtools\")\n\n# 開発中の最新版をインストールする\n# ref=\"\"で開発中のブランチを指定します。だいたい、\"dev\"ブランチに開発中のものがあります\ndevtools::install_github(\"ichimomo/frasyr\", ref=\"dev\")\n\n# 過去の安定版を指定してインストールする場合\n# @以下にリリースバージョンを指定します\ndevtools::install_github(\"ichimomo/frasyr@v1.00\")\n\n# 以上の操作をしてfrasyrをインストールしてから、以下のコマンドで呼び出します\nlibrary(frasyr)\n\n```\n\n# リリースバージョン\n最新のリリース状況についてはこちらを参照ください　https://github.com/ichimomo/frasyr/releases\n\n以下は過去のリリースです\n- v1.00 : future-rvpaから移動してきたほぼそのままのバージョン\n- v1.10 : future.vpaにuse.MSEオプションを追加\n- v1.20 : 2019年アジ・イワシ事前検討会用\n- v2.00 : 2020年アジ・イワシ研究機関会議用(事前配布版)\n   - 将来予測のメイン関数をfuture.vpaからfuture_vpaに移行。基本的な使い方は以下のマニュアルのリンク先を参照のこと\n- v2.01 : 2020年アジ・イワシ研究機関会議用(最終版)\n   - fit.parでL1の場合のSDをRMSEに統一\n- v2.1.0.0 : 2020年度資源評価会議用プロトタイプバージョン\n   - VPAを用いたモデル診断スクリプトをvignetteに追加\n   - 途中でプラスグループが変わる（対馬マイワシ）VPAの計算を修正\n   - ほか、関数のテストを充実。\n\n# マニュアル\n- VPAによる資源量推定　[vignette](https://ichimomo.github.io/frasyr/articles/vpa.html)\n- VPAモデル診断スクリプト　[vignette](https://ichimomo.github.io/frasyr/articles/Diagnostics-for-VPA.html)\n- fitSR関数による再生産関係推定　[vignette](https://ichimomo.github.io/frasyr/articles/fittingSR.html)\n\nこれらはRコマンドで以下のようにしても見れます。\n```\ndevtools::install_github(\"ichimomo/frasyr\", ref=\"dev\", build_vignettes=TRUE) # インストールするときにvignetteを作る（時間かかります）\nlibrary(frasyr)\nvignette(package=\"frasyr\") # 利用可能なvignetteを調べる\nvignette(\"vpa\",package=\"frasyr\") # VPAの実施のしかた\nvignette(\"Diagnostics-for-VPA\",package=\"frasyr\") # VPAのモデル診断\n```\n\n- 将来予測関数の使い方：[wiki](https://github.com/ichimomo/frasyr/wiki/future_new)\n\n\n\u003c!--\n- 新ルールのもとでの将来予測計算 https://ichimomo.github.io/frasyr/doc/future.html\n- 管理基準値の計算 https://ichimomo.github.io/frasyr/doc/estMSY.html\n--\u003e\n\n\n\n=======\n\nfrasyr_tool群の全体説明は[こちら](https://ichimomo.github.io/main/)\n","funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://ost.ecosyste.ms/api/v1/projects/300836","html_url":"https://ost.ecosyste.ms/projects/300836"}