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and Hydrology Data Access","monthly_downloads":911,"total_dependent_repos":0,"total_dependent_packages":1,"readme":"---\noutput: github_document\n---\n\n```{r settings, echo = FALSE, message = FALSE}\nknitr::opts_chunk$set(\n  collapse = TRUE,\n  comment = \"#\u003e\",\n  fig.path = \"man/figures/README-\"\n)\nlibrary(CopernicusMarine)\n```\n\n# CopernicusMarine \u003cimg src=\"man/figures/logo.png\" align=\"right\" height=\"139\" copyright=\"cc-sa\" alt=\"logo\" /\u003e\n\n\u003c!-- badges: start --\u003e\n[![R-CMD-check](https://github.com/pepijn-devries/CopernicusMarine/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/pepijn-devries/CopernicusMarine/actions/workflows/R-CMD-check.yaml)\n![cranlogs](https://cranlogs.r-pkg.org/badges/CopernicusMarine)\n[![version](https://www.r-pkg.org/badges/version/CopernicusMarine)](https://CRAN.R-project.org/package=CopernicusMarine)\n[![cran checks](https://badges.cranchecks.info/worst/CopernicusMarine.svg)](https://cran.r-project.org/web/checks/check_results_CopernicusMarine.html)\n[![CopernicusMarine status badge](https://pepijn-devries.r-universe.dev/badges/CopernicusMarine)](https://pepijn-devries.r-universe.dev/CopernicusMarine)\n[![Codecov test coverage](https://codecov.io/gh/pepijn-devries/CopernicusMarine/graph/badge.svg)](https://app.codecov.io/gh/pepijn-devries/CopernicusMarine)\n\u003c!-- badges: end --\u003e\n\n## Overview\n\n[Copernicus Marine Service Information](https://marine.copernicus.eu/about/) is a programme subsidised by the\nEuropean Commission. Its mission is to provide free authoritative information on the oceans physical and\nbiogeochemical state. The `CopernicusMarine` R package is developed apart from this programme and facilitates\nretrieval of information from \u003chttps://data.marine.copernicus.eu\u003e. With the package you can:\n\n * List available marine data for Copernicus and provide meta-information.\n * Download and use the data directly in R.\n\n## Why use `CopernicusMarine`\n\nCopernicus Marine offers access to their data services through a\n[Python application interface](https://pypi.org/project/copernicusmarine/).\nFor R users this requires complex installation procedures and is difficult to maintain in\na stable R package. The `CopernicusMarine` R package has\na much simpler installation procedure (see below) and does not depend on\nthird party software, other than packages available from [CRAN](https://cran.r-project.org/).\n\n## Installation\n\nInstall CRAN release:\n\n```{r install1, eval=FALSE}\ninstall.packages(\"CopernicusMarine\")\n```\n\nInstall latest developmental version from R-Universe:\n\n```{r install2, eval=FALSE}\ninstall.packages(\"CopernicusMarine\", repos = c('https://pepijn-devries.r-universe.dev', 'https://cloud.r-project.org'))\n```\n\n## Usage\n\nThe package provides an interface between R and the Copernicus Marine services. Note that for some of these\nservices you need an account and have to comply with\n[specific terms](https://marine.copernicus.eu/user-corner/service-commitments-and-licence). The usage section\nbriefly shows three different ways of obtaining data from Copernicus:\n\n * [Downloading a subset](#sec-subset)\n * [Downloading a full dataset](#sec-full)\n * [Using the WMTS server](#sec-wtms)\n\nIf you want to explore the available products and their layers, you\nshould consult `vignette(\"product-info\")`.\nPlease check the manual for complete documentation of the package.\n\n\u003ch3 id=\"sec-subset\"\u003eDownloading a subset\u003c/h3\u003e\n\nThe example below demonstrates how to subset a specific layer for a specific product. The subset is constrained by\nthe `region`, `timerange` and `verticalrange` arguments. The subset is downloaded to memory\nrepresented as a [`stars`](https://r-spatial.github.io/stars/) object.\n\n```{r download-subset, eval=TRUE, fig.alt=\"Example plots of downloaded subsets\", results='hide'}\nmy_data \u003c-\n  cms_download_subset(\n    product       = \"GLOBAL_ANALYSISFORECAST_PHY_001_024\",\n    layer         = \"cmems_mod_glo_phy-cur_anfc_0.083deg_P1D-m\",\n    variable      = c(\"uo\", \"vo\"),\n    region        = c(-1, 50, 10, 55),\n    timerange     = c(\"2025-01-01\", \"2025-01-02\"),\n    verticalrange = c(0, -0.5),\n    progress      = FALSE\n)\n\nplot(my_data[\"vo\", drop = TRUE], col = hcl.colors(100), axes = TRUE)\n```\n\nYou can also use the request code from the Copernicus Marine Service website\nto download a subset. For more details see `vignette(\"translate\")`\n\nIn addition it is also possible to subset data with `stars_proxy` objects,\nusing either `cms_zarr_proxy()` or `cms_native_proxy()`. This is explained\nin more detail in `vignette(\"proxy\")`.\n\n\u003ch3 id=\"sec-full\"\u003eDownloading a complete Copernicus marine product\u003c/h3\u003e\n\nIf you don't want to subset the data and want the complete set, you can download\ncomplete native files, if these are available for your product.\nYou can list available files with (restricted to first 10 results with `max=10`):\n\n```{r native1}\nnative_files \u003c-\n  cms_list_native_files(\n    \"GLOBAL_ANALYSISFORECAST_PHY_001_024\",\n    \"cmems_mod_glo_phy-cur_anfc_0.083deg_P1D-m\",\n    max = 10)\nnative_files\n```\n\nDownloading a specific (or multiple file) can be done with:\n\n```{r native2, eval=FALSE}\ncms_download_native(\n  destination   = tempdir(),\n  product       = \"GLOBAL_ANALYSISFORECAST_PHY_001_024\",\n  layer         = \"cmems_mod_glo_phy_anfc_0.083deg_PT1H-m\",\n  prefix        = \"2022/06/\",\n  pattern       = \"m_20220630\"\n)\n```\nThe file, whose file name matches the pattern, will be stored in the specified destination folder.\nBy default the progress is printed as files can be very large and may take some time to download.\n\n\u003ch3 id=\"sec-wmts\"\u003eCopernicus Web Map Tile Services (WMTS)\u003c/h3\u003e\n\nWeb Map Tile Services (WMTS) allow to quickly plot pre-rendered images onto a map. This may not be useful when\nyou need the data for analyses but is handy for quick visualisations, inspection or presentation of data.\nIn R it is very easy to add WMTS layers to an interactive map using [leaflet](https://rstudio.github.io/leaflet/).\nThis page is rendered statically and resulting in a non-interactive map.\n\n```{r leaflet, eval=TRUE, message=FALSE, warning=FALSE, fig.alt=\"Static example image of a leaflet map\"}\nleaflet::leaflet() |\u003e\n  leaflet::setView(lng = 3, lat = 54, zoom = 4) |\u003e\n  leaflet::addProviderTiles(\"Esri.WorldImagery\") |\u003e\n  addCmsWMTSTiles(\n    product     = \"GLOBAL_ANALYSISFORECAST_PHY_001_024\",\n    layer       = \"cmems_mod_glo_phy-thetao_anfc_0.083deg_P1D-m\",\n    variable    = \"thetao\"\n  )\n```\n\n### Citing the data you use\n\nA Copernicus account comes with several terms of use. One of these is that you\n[properly cite](https://help.marine.copernicus.eu/en/articles/4444611-how-to-cite-copernicus-marine-products-and-services)\nthe data you use in publications. In fact, we also have credit the data used in this documentation, which can be easily\ndone with the following code:\n\n```{r cite, eval=TRUE}\ncms_cite_product(\"GLOBAL_ANALYSISFORECAST_PHY_001_024\")$doi\n```\n\n## More of Copernicus\n\nMore R packages for exploring other Copernicus data services:\n\n * [CopernicusClimate](https://github.com/pepijn-devries/CopernicusClimate)\n Dedicated to climate change datasets\n\n## Resources\n\n```{r, eval=TRUE, echo=FALSE}\ncop_det \u003c- cms_product_details(\"GLOBAL_ANALYSISFORECAST_PHY_001_024\")\n```\n\n * [E.U. Copernicus Marine Service Information](https://data.marine.copernicus.eu)\n * `r sprintf(\"[%s - %s (%s); DOI:%s](https://doi.org/%s)\", cop_det$title, cop_det$id, cop_det$properties$creationDate, cop_det[[\"sci:doi\"]], cop_det[[\"sci:doi\"]])`\n\n## Code of Conduct\n\nPlease note that the CopernicusMarine project is released with a [Contributor Code of Conduct](https://pepijn-devries.github.io/CopernicusMarine/CODE_OF_CONDUCT.html). By contributing to this project, you agree to abide by its terms.\n","funding_links":[],"readme_doi_urls":["https://doi.org/"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://ost.ecosyste.ms/api/v1/projects/297136","html_url":"https://ost.ecosyste.ms/projects/297136"}