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Resources","sub_category":"Soil and Land","monthly_downloads":0,"total_dependent_repos":0,"total_dependent_packages":0,"readme":"---\noutput: github_document\n---\n\n# soils \u003ca href=\"https://wa-department-of-agriculture.github.io/soils/\"\u003e\u003cimg src=\"man/figures/logo.png\" align=\"right\" height=\"138\"/\u003e\u003c/a\u003e\n\n\u003c!-- badges: start --\u003e\n\n[![Project Status: Active -- The project has reached a stable, usable state and\nis being actively\ndeveloped.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)\n\n[![CRAN\nstatus](https://www.r-pkg.org/badges/version/soils)](https://CRAN.R-project.org/package=soils)\n[![:name status\nbadge](https://wa-department-of-agriculture.r-universe.dev/badges/:name)](https://wa-department-of-agriculture.r-universe.dev/)\n[![soils status\nbadge](https://wa-department-of-agriculture.r-universe.dev/badges/soils)](https://wa-department-of-agriculture.r-universe.dev/soils)\n[![R-CMD-check](https://github.com/WA-Department-of-Agriculture/soils/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/WA-Department-of-Agriculture/soils/actions/workflows/R-CMD-check.yaml)\n\n\u003c!-- badges: end --\u003e\n\n```{r setup, include=FALSE}\nknitr::opts_chunk$set(\n  fig.align = \"left\",\n  dpi = 300\n)\n```\n\n📢 **Announcing Dirt Data Reports: a no-code soil health reporting tool built on\n{soils} using Shiny**\n\n👉 Try it [here](https://wsda.shinyapps.io/dirt-data-reports/) if you don't need\nfull customization or prefer not to code.\n\n📖 Read more about it in this [blog\npost](https://washingtonsoilhealthinitiative.com/2025/09/dirt-data-reports/).\n\n# Overview\n\n{soils} is an R package for all your soil health data visualization and\nreporting needs. {soils} provides an RStudio project template to generate\ncustomized, interactive soil health reports. These reports include plots and\ntables to show how the participant's results compare to simple averages of\nresults from samples of the same crop, same county, and across the entire\nproject.\n\nAny scientist leading a soil health survey can use {soils} to create custom\nreports for all participants. Democratize your data by giving back to the\nfarmers and land managers who contributed soil samples to your soil sampling\nproject. Use these reports to empower each participant to explore and better\nunderstand their data.\n\nThe [Washington State Department of\nAgriculture](https://agr.wa.gov/departments/land-and-water/natural-resources/soil-health)\nand [Washington State University](https://soilhealth.wsu.edu/) developed {soils}\nas part of the [Washington Soil Health\nInitiative](https://washingtonsoilhealthinitiative.com/). Learn more about\n{soils} in this [blog\npost](https://washingtonsoilhealthinitiative.com/2024/03/soils-an-r-package-for-soil-health-reporting/)\nor this [webinar](https://youtu.be/_8m7fTjSEOk?si=ikrCASdchiB6rDC2).\n\n# Requirements\n\nThe report template uses [Quarto](https://quarto.org/docs/get-started/), which\nis the [next-generation](https://quarto.org/docs/faq/rmarkdown.html) version of\n[R Markdown](https://quarto.org/docs/faq/rmarkdown.html).\n\nWe assume you're using [RStudio\nv2022.07](https://dailies.rstudio.com/version/2022.07.2+576.pro12/) or later for\nediting and previewing Quarto documents. We **strongly recommend** you use the\n[latest release of RStudio](https://posit.co/download/rstudio-desktop/) for\nsupport of all Quarto features. You can also download and install the [latest\nversion of Quarto](https://quarto.org/docs/get-started/) independently from\nRStudio.\n\nTo render Microsoft Word (MS Word) documents, you must have MS Word installed\nand activated.\n\n**If you're new to Quarto and Markdown formatting syntax, first take a look at\nthe Primers on\n[Quarto](https://wa-department-of-agriculture.github.io/soils/articles/quarto.html)\nand\n[Markdown](https://wa-department-of-agriculture.github.io/soils/articles/markdown.html)\nto learn how they're used in {soils} and get familiar with their features.**\n\n# Installation\n\nInstall the development version of {soils} from our\n[r-universe](https://wa-department-of-agriculture.r-universe.dev/) with:\n\n```{r install-r-universe, eval=FALSE}\ninstall.packages(\n  \"soils\",\n  repos = c(\"https://wa-department-of-agriculture.r-universe.dev\")\n)\n```\n\nOr install from GitHub with [{pak}](https://pak.r-lib.org/index.html):\n\n```{r pak-install, eval=FALSE}\n# Uncomment the below line if {pak} is not installed.\n# install.packages(\"pak\")\npak::pak(\"WA-Department-of-Agriculture/soils\")\n```\n\nLoad the example datasets and functions with:\n\n```{r load-soils, eval=FALSE}\nlibrary(soils)\n```\n\n# Usage\n\n{soils} was developed to work 'out of the box' so you can immediately install\nand render an example report. However, you will need to customize and edit\ncontent to fit your project.\n\nOur recommended workflow is to **1)** create a new {soils} project, **2)** try\nto render the example reports to make sure everything works on your system, and\n**3)** customize the template files to use your own data, content, and styling.\n\nWe provide a series of [Primers and\nTutorials](https://wa-department-of-agriculture.github.io/soils/articles/index.html)\nto prepare and guide you through this workflow. See below for short demo videos\nand links to the relevant tutorials.\n\n## 1. Create a new {soils} project\n\nFollow along in the [**Create a {soils}\nproject**](https://wa-department-of-agriculture.github.io/soils/articles/project.html)\ntutorial. Choose between two report templates: **English** or **Spanish**.\n\n[create-soils.webm](https://github.com/WA-Department-of-Agriculture/soils/assets/95007373/12a01cf7-0efc-4948-b41e-a826dd86e6f6)\n\n## 2. Render the example reports\n\nFollow along in the [**Render the example\nreports**](https://wa-department-of-agriculture.github.io/soils/articles/render-example.html)\ntutorial.\n\nSee the [**rendered example\nreports**](https://wa-department-of-agriculture.github.io/soils/articles/examples.html).\n\n### HTML\n\n[render-html.webm](https://github.com/WA-Department-of-Agriculture/soils/assets/95007373/a1f680a0-bed4-495a-aae7-ba85a9fa22e3)\n\n### MS Word\n\n[render-docx.webm](https://github.com/WA-Department-of-Agriculture/soils/assets/95007373/a617fee6-a53b-4772-ac3b-bf8d48f8fc5b)\n\n## 3. Create reports with your own data\n\nTo use your own data, customize the reports for your project, and render all\nreports, follow along with these tutorials:\n\n-   [**Import\n    data**](https://wa-department-of-agriculture.github.io/soils/articles/data.html)\n\n-   [**Customize \u0026\n    write**](https://wa-department-of-agriculture.github.io/soils/articles/customize.html)\n\n-   [**Render\n    reports**](https://wa-department-of-agriculture.github.io/soils/articles/render.html)\n\n[render-reports.webm](https://github.com/WA-Department-of-Agriculture/soils/assets/95007373/b796f674-ed90-4d57-bed3-85b58c399c8f)\n\n## Troubleshooting\n\nAs you edit the content, errors are bound to occur. Read [**tips and workflows\nfor\ntroubleshooting**](https://wa-department-of-agriculture.github.io/soils/articles/troubleshoot.html)\n\n# Acknowledgement and citation\n\nThe below acknowledgement is automatically embedded in each report:\n\n```{r acknowledgement, echo = FALSE, results='asis'}\nacknowledgement \u003c- knitr::knit_child(\n  here::here(\"inst/templates/english/09_acknowledgement.qmd\"),\n  quiet = TRUE\n)\n\ncat(\"\u003e\", acknowledgement)\n```\n\n```{r citation-header, echo=FALSE, results='asis'}\ncitation \u003c- citation(\"soils\")\n\nheader \u003c- format(citation, style = \"citation\")[[1]]\ntext \u003c- format(citation, style = \"textVersion\")\n\ncat(header)\n```\n\n```{r citation-text, echo=FALSE, results='asis'}\ncat(\"\u003e\", text)\n```\n\n## Credits\n\n{soils} adapts from existing R project templating resources and packages:\n\n-   [RStudio Project\n    Templates](https://rstudio.github.io/rstudio-extensions/rstudio_project_templates.html)\n-   [{ratlas}](https://github.com/atlas-aai/ratlas)\n-   [{quartotemplate}](https://github.com/Pecners/quartotemplate)\n-   [{golem}](https://github.com/ThinkR-open/golem/)\n\nText and figures were adapted from [WSU Extension publication #FS378E Soil\nHealth in Washington\nVineyards](https://pubs.extension.wsu.edu/soil-health-in-washington-vineyards).\n\nReport text and images were translated by Erica Tello, Eber Rivera, and Kate\nSmith with WSU Food Systems and Skagit County Extension as part of the USDA NRCS\nInnovation in Conservation program, led by Viva Farms (grant number\nNR22-13G004).\n","funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://ost.ecosyste.ms/api/v1/projects/194230","html_url":"https://ost.ecosyste.ms/projects/194230"}