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Data Cleaning and Standardization","monthly_downloads":0,"total_dependent_repos":0,"total_dependent_packages":0,"readme":"# Bionomia\nSinatra app to parse people names from structured biodiversity occurrence data, apply basic regular expressions and heuristics to disambiguate them, and then allow them to be claimed by authenticated users via [ORCID](https://orcid.org). Authenticated users may also help other users that have either ORCID or Wikidata identifiers. The web application lives at [https://bionomia.net](https://bionomia.net).\n\n[![Build Status](https://github.com/bionomia/bionomia/actions/workflows/ruby.yml/badge.svg)](https://github.com/bionomia/bionomia/actions)\n\n## Translations\n\nStrings of text in the user interface are translatable via [config/locales](config/locales). Large pages of text are fully translatable in the [views/static_i18n/](views/static_i18n/) directory.\n\n[![Crowdin](https://badges.crowdin.net/bionomia/localized.svg)](https://crowdin.com/project/bionomia)\n\n## Requirements\n\n1. ruby 3.3.6s+\n2. Elasticsearch 8.18.1+\n3. MySQL 8.0.34+\n4. Redis 7.0.12+\n5. Apache Spark 3+\n6. Unix-based operating system to use GNU parallel to process GBIF downloads\n\n## Installation\n\n     $ git clone https://github.com/bionomia/bionomia.git\n     $ cd bionomia\n     $ gem install bundler\n     $ bundle install\n     $ mysql -u root bionomia \u003c db/bionomia.sql\n     $ cp config/settings/development.yml.sample config/settings/development.yml\n     # Adjust content of development.yml\n     # Copy and edit production.yml and test.yml as above\n     # A development docker image for elasticsearch can be run like:\n     $ docker network create elastic\n     $ docker pull docker.elastic.co/elasticsearch/elasticsearch:8.18.2\n     $ docker run -d --name elasticsearch --net elastic --restart unless-stopped -p 9200:9200 -p 9300:9300 -e \"discovery.type=single-node\" -e \"xpack.security.enabled=false\" elasticsearch:8.18.2\n     $ RUBY_YJIT_ENABLE=true rackup -p 4567 config.ru\n\n## License\n\nThe MIT License (MIT)\n\nCopyright (c) David P. Shorthouse\n\nPermission is hereby granted, free of charge, to any person obtaining a copy\nof this software and associated documentation files (the \"Software\"), to deal\nin the Software without restriction, including without limitation the rights\nto use, copy, modify, merge, publish, distribute, sublicense, and/or sell\ncopies of the Software, and to permit persons to whom the Software is\nfurnished to do so, subject to the following conditions:\n\nThe above copyright notice and this permission notice shall be included in all\ncopies or substantial portions of the Software.\n\nTHE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\nIMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\nFITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE\nAUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\nLIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,\nOUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE\nSOFTWARE.\n","funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["biodiversity","gbif","ontologies"],"project_url":"https://ost.ecosyste.ms/api/v1/projects/178288","html_url":"https://ost.ecosyste.ms/projects/178288"}